2024-05-05 20:04:54, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_042353317 1827 bp mRNA linear INV 16-JUL-2021 DEFINITION PREDICTED: Homarus americanus probable serine/threonine-protein kinase DDB_G0282963 (LOC121857289), mRNA. ACCESSION XM_042353317 VERSION XM_042353317.1 DBLINK BioProject: PRJNA744898 KEYWORDS RefSeq; includes ab initio. SOURCE Homarus americanus (American lobster) ORGANISM Homarus americanus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Nephropoidea; Nephropidae; Homarus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024711292.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Homarus americanus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..1827 /organism="Homarus americanus" /mol_type="mRNA" /isolate="GMGI-L3" /isolation_source="marine" /db_xref="taxon:6706" /chromosome="Unknown" /sex="male" /tissue_type="heart & testis" /country="USA: Gloucester, Massachusetts" /collection_date="2015" gene 1..1827 /gene="LOC121857289" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:121857289" CDS 1..1827 /gene="LOC121857289" /codon_start=1 /product="probable serine/threonine-protein kinase DDB_G0282963" /protein_id="XP_042209251.1" /db_xref="GeneID:121857289" /translation="
MTTVIMLTKIMTTVITTTVIMATVIKATVIMITVIMARVIMTTVIILTKIMITVITTTEIMITVIMNHSVNGPVIMMIKIMTTVIMATVIMAKVILTTIIMTTVIVTSVIMTKTIMTIMIMTTVIVATVIMTTIIITTLIITIIIIATVIMTSVIMTTVIMTTVIMTIMIMTTVIMTKFIMSTLIMTTVIMTHSDLDHSDHDHNDHNLSDHDNLEHDNNDHDHNDHDHNDHAHSDHNLSDHDHNDHDHNNHDHRDHNRSDHDHSDNDHNDHDHSDYDHSDHDNNDHGHSDHENNDHDHNHDYSDHNHIDHENSNHDNSDHNHRDHNHSEHDYSDHDYSDIDLNDHENHDHNHSDHDQNDYDHSDHDHSDHDHSVHDHRDHNNSDHYHSDHENMIMNHSDHDYIHHNHSDHNHSGHDHSDHDHSDNDYSHHNHSGHNHSDHNPSDHDHSDHDHSDHDYSHHNYSVHDHNHDYSDHNDSDHDHSDHNHSDHENSNHDNSDHNHSDHNHSDHDYSDHDYSDNDLNDHENHDHNHSDDDHGDYDHKIMTTVIITTVIMIPVIMTTVFMTTVIMTPVIMTPVIMTTVIMTTTIMIIIIMTKGIINYSDHDHSG"
misc_feature <796..>888 /gene="LOC121857289" /note="Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between...; Region: TroA-like; cl00262" /db_xref="CDD:444796" misc_feature <853..>969 /gene="LOC121857289" /note="CDF family Co(II)/Ni(II) efflux transporter DmeF; Region: CDF_efflux_DmeF; NF033827" /db_xref="CDD:411398" ORIGIN
atgaccacagtgatcatgttaacaaagatcatgaccacagtgatcacgaccactgtgatcatggccacagtgataaaggccacagtgatcatgatcacagtgataatggccagagtgatcatgaccacagtgatcattttaacaaagatcatgatcactgtgatcacgaccacagagatcatgatcacagtgatcatgaaccacagtgttaatggcccagtgattatgatgataaagatcatgacgacagtgataatggccacagtgatcatggccaaagtgatattgacaacaataattatgaccacagtgatcgtgacctcagtgatcatgaccaaaacgataatgaccataatgatcatgaccacagtgatcgtggccacagtgatcatgacaacaatcattataactacattgatcatcaccataattatcatagccactgtgatcatgacctcagtgatcatgaccacagtgatcatgacgacagtgatcatgaccataatgatcatgaccacagtgatcatgaccaaattcatcatgtccactctgatcatgaccacagtgatcatgacccacagcgatcttgaccacagtgatcatgatcataatgaccataacctcagtgatcatgacaaccttgaacatgacaacaatgatcatgaccataatgatcatgaccacaatgatcatgcccacagtgatcataacctcagtgatcatgaccacaacgatcatgatcataataatcatgaccacagggatcataaccgcagtgatcatgaccacagtgataatgatcacaatgatcatgaccacagtgattatgaccacagtgatcatgacaataatgatcatggccacagtgatcatgaaaacaatgatcatgaccacaatcatgactacagcgatcataaccacattgatcatgaaaacagtaatcatgacaacagtgatcacaaccacagggatcataaccacagtgaacatgactacagtgatcatgactacagtgatattgacctcaatgatcatgaaaaccatgatcataaccacagtgatcatgaccaaaatgattatgaccacagtgatcatgaccacagtgatcatgaccacagcgttcatgaccacagagatcataacaacagtgatcattaccacagtgatcatgaaaacatgatcatgaaccatagtgatcatgactacattcatcataaccacagtgatcataaccacagtggtcatgaccacagtgatcatgaccacagtgataatgactacagtcatcataaccacagtggtcataaccacagtgatcataaccccagtgaccatgaccacagtgatcatgaccacagtgatcatgactacagtcatcataactacagtgttcatgaccacaatcatgactacagtgatcataacgacagtgatcatgaccacagtgatcataaccacagtgatcatgaaaacagtaatcatgacaacagtgatcacaaccacagtgatcataaccatagtgatcatgactacagtgatcatgactacagtgataatgacctcaatgatcatgaaaaccatgatcataaccacagtgatgatgaccacggtgattatgaccacaaaatcatgaccacagtgatcataaccacagtcatcatgatcccagtgatcatgaccacagtgttcatgaccacagtgatcatgaccccagtgatcatgaccccagtgatcatgaccactgtgatcatgaccacaacgatcatgatcataataatcatgaccaaagggatcataaactacagtgatcatgaccacagtggttaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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