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2024-05-05 20:04:54, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_042353317            1827 bp    mRNA    linear   INV 16-JUL-2021
DEFINITION  PREDICTED: Homarus americanus probable serine/threonine-protein
            kinase DDB_G0282963 (LOC121857289), mRNA.
ACCESSION   XM_042353317
VERSION     XM_042353317.1
DBLINK      BioProject: PRJNA744898
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Homarus americanus (American lobster)
  ORGANISM  Homarus americanus
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea;
            Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda;
            Pleocyemata; Astacidea; Nephropoidea; Nephropidae; Homarus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_024711292.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Homarus americanus Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 100% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1827
                     /organism="Homarus americanus"
                     /mol_type="mRNA"
                     /isolate="GMGI-L3"
                     /isolation_source="marine"
                     /db_xref="taxon:6706"
                     /chromosome="Unknown"
                     /sex="male"
                     /tissue_type="heart & testis"
                     /country="USA: Gloucester, Massachusetts"
                     /collection_date="2015"
     gene            1..1827
                     /gene="LOC121857289"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein"
                     /db_xref="GeneID:121857289"
     CDS             1..1827
                     /gene="LOC121857289"
                     /codon_start=1
                     /product="probable serine/threonine-protein kinase
                     DDB_G0282963"
                     /protein_id="XP_042209251.1"
                     /db_xref="GeneID:121857289"
                     /translation="
MTTVIMLTKIMTTVITTTVIMATVIKATVIMITVIMARVIMTTVIILTKIMITVITTTEIMITVIMNHSVNGPVIMMIKIMTTVIMATVIMAKVILTTIIMTTVIVTSVIMTKTIMTIMIMTTVIVATVIMTTIIITTLIITIIIIATVIMTSVIMTTVIMTTVIMTIMIMTTVIMTKFIMSTLIMTTVIMTHSDLDHSDHDHNDHNLSDHDNLEHDNNDHDHNDHDHNDHAHSDHNLSDHDHNDHDHNNHDHRDHNRSDHDHSDNDHNDHDHSDYDHSDHDNNDHGHSDHENNDHDHNHDYSDHNHIDHENSNHDNSDHNHRDHNHSEHDYSDHDYSDIDLNDHENHDHNHSDHDQNDYDHSDHDHSDHDHSVHDHRDHNNSDHYHSDHENMIMNHSDHDYIHHNHSDHNHSGHDHSDHDHSDNDYSHHNHSGHNHSDHNPSDHDHSDHDHSDHDYSHHNYSVHDHNHDYSDHNDSDHDHSDHNHSDHENSNHDNSDHNHSDHNHSDHDYSDHDYSDNDLNDHENHDHNHSDDDHGDYDHKIMTTVIITTVIMIPVIMTTVFMTTVIMTPVIMTPVIMTTVIMTTTIMIIIIMTKGIINYSDHDHSG"
     misc_feature    <796..>888
                     /gene="LOC121857289"
                     /note="Helical backbone metal receptor (TroA-like domain).
                     These proteins have been shown to function in the ABC
                     transport of ferric siderophores and metal ions such as
                     Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is
                     formed in the interface between...; Region: TroA-like;
                     cl00262"
                     /db_xref="CDD:444796"
     misc_feature    <853..>969
                     /gene="LOC121857289"
                     /note="CDF family Co(II)/Ni(II) efflux transporter DmeF;
                     Region: CDF_efflux_DmeF; NF033827"
                     /db_xref="CDD:411398"
ORIGIN      
atgaccacagtgatcatgttaacaaagatcatgaccacagtgatcacgaccactgtgatcatggccacagtgataaaggccacagtgatcatgatcacagtgataatggccagagtgatcatgaccacagtgatcattttaacaaagatcatgatcactgtgatcacgaccacagagatcatgatcacagtgatcatgaaccacagtgttaatggcccagtgattatgatgataaagatcatgacgacagtgataatggccacagtgatcatggccaaagtgatattgacaacaataattatgaccacagtgatcgtgacctcagtgatcatgaccaaaacgataatgaccataatgatcatgaccacagtgatcgtggccacagtgatcatgacaacaatcattataactacattgatcatcaccataattatcatagccactgtgatcatgacctcagtgatcatgaccacagtgatcatgacgacagtgatcatgaccataatgatcatgaccacagtgatcatgaccaaattcatcatgtccactctgatcatgaccacagtgatcatgacccacagcgatcttgaccacagtgatcatgatcataatgaccataacctcagtgatcatgacaaccttgaacatgacaacaatgatcatgaccataatgatcatgaccacaatgatcatgcccacagtgatcataacctcagtgatcatgaccacaacgatcatgatcataataatcatgaccacagggatcataaccgcagtgatcatgaccacagtgataatgatcacaatgatcatgaccacagtgattatgaccacagtgatcatgacaataatgatcatggccacagtgatcatgaaaacaatgatcatgaccacaatcatgactacagcgatcataaccacattgatcatgaaaacagtaatcatgacaacagtgatcacaaccacagggatcataaccacagtgaacatgactacagtgatcatgactacagtgatattgacctcaatgatcatgaaaaccatgatcataaccacagtgatcatgaccaaaatgattatgaccacagtgatcatgaccacagtgatcatgaccacagcgttcatgaccacagagatcataacaacagtgatcattaccacagtgatcatgaaaacatgatcatgaaccatagtgatcatgactacattcatcataaccacagtgatcataaccacagtggtcatgaccacagtgatcatgaccacagtgataatgactacagtcatcataaccacagtggtcataaccacagtgatcataaccccagtgaccatgaccacagtgatcatgaccacagtgatcatgactacagtcatcataactacagtgttcatgaccacaatcatgactacagtgatcataacgacagtgatcatgaccacagtgatcataaccacagtgatcatgaaaacagtaatcatgacaacagtgatcacaaccacagtgatcataaccatagtgatcatgactacagtgatcatgactacagtgataatgacctcaatgatcatgaaaaccatgatcataaccacagtgatgatgaccacggtgattatgaccacaaaatcatgaccacagtgatcataaccacagtcatcatgatcccagtgatcatgaccacagtgttcatgaccacagtgatcatgaccccagtgatcatgaccccagtgatcatgaccactgtgatcatgaccacaacgatcatgatcataataatcatgaccaaagggatcataaactacagtgatcatgaccacagtggttaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]