2024-04-25 20:57:10, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_041809624 6587 bp mRNA linear VRT 26-MAY-2021 DEFINITION PREDICTED: Cheilinus undulatus argonaute RISC component 4 (ago4), transcript variant X1, mRNA. ACCESSION XM_041809624 VERSION XM_041809624.1 DBLINK BioProject: PRJNA731939 KEYWORDS RefSeq. SOURCE Cheilinus undulatus (humphead wrasse) ORGANISM Cheilinus undulatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Labriformes; Labridae; Cheilinus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_054880.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cheilinus undulatus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6587 /organism="Cheilinus undulatus" /mol_type="mRNA" /db_xref="taxon:241271" /sex="female" /tissue_type="muscle" /linkage_group="16" gene 1..6587 /gene="ago4" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns" /db_xref="GeneID:121524302" CDS 168..2807 /gene="ago4" /codon_start=1 /product="protein argonaute-4 isoform X1" /protein_id="XP_041665558.1" /db_xref="GeneID:121524302" /translation="
MEALGPGPPAPTSLFQPPRRPGLGTVGKPIRLLANHFQVQIPKIDVYHYDIDIKPEKRPRRVNREVVDTMVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDLEVTLPGEGKDQTFKVSLQWVSVVSLQMLLEALSGHLNEVPEDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPVIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNDMTEVTGRVLPAPMLQYGGRVSTDTGRDCGRGLSPQNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKMSYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQDMSQEQLFSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCSDKAERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHYDTQHTMYFA"
misc_feature 249..638 /gene="ago4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 669..821 /gene="ago4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 822..1184 /gene="ago4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(978..980,1023..1025,1065..1067,1077..1079, 1131..1133,1152..1154,1158..1160) /gene="ago4" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1323..2678 /gene="ago4" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1782..1784,1794..1796,1830..1841,1848..1850, 1872..1874,1881..1883,1893..1895,1905..1907) /gene="ago4" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1986..1988,1992..1994,2232..2234,2646..2648) /gene="ago4" /note="active site" /db_xref="CDD:240015" ORIGIN
cagcggcggtagttcaggtcagtcagtccagtcagcagtcatcctcgcgtctatctatattcccttttcttaaattagccactttaagcttcgcgataccgcccccaatttcagcgtcggtacggagccgccaggccgggacagagacggagagagaggcctcggccatggaagcgctcggacccggcccgcccgcaccaacctctctgtttcagcctccacggcgtcccggccttggcacggtggggaaacccatccggctccttgccaaccacttccaggttcagattcccaagattgatgtctatcattatgatatcgacatcaagcctgagaaacggcctcggagggtcaacagggaggtggtggacacgatggtgcggcacttcaagatgcagatctttggagaccgacagcctggctacgatgggaagaggaacatgtacacagcacatccactgccaattgggagggacagggtggacctggaggtgactctacctggtgagggaaaagatcaaacgtttaaggtgtccttgcagtgggtgtctgtggtcagtcttcagatgctgctggaggctctgtcaggtcacctgaacgaggtccccgaggactcggttcaggctttggatgtcatcacgcggcacctgccctccatgaggtatactcctgtggggcgttcctttttctcacctccagagggctactaccatcctctgggtggaggcagagaggtgtggtttggtttccatcagtctgtccgtcctgccatgtggaacatgatgctcaatattgatgtgtcagccacagctttctaccgtgctcagcctgtgattgagttcatgtgtgaggtgctggatatacagaacatcaacgaacagaccaaacccctcactgactcacagcgtgtcaaattcaccaaggaaataagaggcttgaaagttgaggtcacacactgtggtcaaatgaagaggaagtaccgtgtgtgcaatgtaacgcgccgacctgcaagccaccaaacgttccccttacagctcgagaacggccaagccatggagtgcacagtagctcagtatttcaagcagaagtacaatctgcagctcaagtatccacatttaccttgcctgcaagtagggcaagaacagaagcacacctaccttcccctggaggtctgtaacatcgtagcgggccagcgctgtatcaagaaactgacggacaaccagacatccaccatgatcaaagctacagctcgctctgcccccgacagacaggaagagatcagcagactggtcaaaagcaacagcatggtcgggggcccggacccttacctgaaagaatttggcattgtggttcacaatgacatgactgaagtgaccggccgtgttctcccagcacccatgctgcagtatgggggccgggtgagtacagacacagggcgggactgtggcaggggactctctccgcagaataagaccgtggccacgcccaaccagggcgtgtgggacatgagagggaagcagttctacgccggcatcgagatcaaggtgtgggccgtggcctgcttcgctccacagaaacagtgccgggaggacctgctcaagagtttcactgaccagctacgaaagatctccaaggatgctgggatgcccattcaaggccagccatgtttctgtaaatatgcccaaggagctgacagcgtggagcccatgttcaaacacctcaagatgtcttacgtaggactgcagcttatcgtggtcatcctgcctggcaaaacacccgtctatgctgaggtaaaacgtgtgggtgacactctgctcggcatggcaactcagtgtgtgcaggtaaagaacgtagtgaagacgtcccctcagaccctctccaacctgtgcctcaagatcaacgccaagctgggaggaatcaacaacgtcctggtgcctcaccagaggccctccgtgttccagcagccggtcatcttcctgggtgcagatgtcacccatcctccagcaggtgatgggaagaaaccgtccattgcagcagtagtgggcagcatggatggccacccgagccgttattgcgccacggtgcgagtacagacgtccagacaagacatgtcacaggagcagctctttagccaagaggtgatccaagacctgaccaacatggtgcgggagcttctcatccagttctacaaatcaacgcgcttcaagcccacacggatcatctattatcgcgggggtgtgtcagagggacaaatgaaacaggtagcgtggccagagctgatagctatcaggaaggcctgtatcagtctggaggaggattacaggccaggcattacttacatcgtggtccagaaacgtcatcatactcgtctcttctgctctgacaaagctgagcgggtcgggaagagtggaaacgtcccagcaggcaccacggtggacagcaccatcacacacccgtccgaatttgacttctacctgtgcagccatgcagggattcagggaaccagtcgtccctcccactaccacgtcctgtgggatgacaactgtttcactgccgatgaactgcagctcctcacctaccagctgtgccacacttacgtccgctgcacgcgctcagtctccatcccagcaccagcttactacgctcggctggtggctttcagagcccgctatcacctggtggacaaagaccatgacagtgctgaaggcagccacgtgtcgggccaaagtaacggccgggaccctcaagcgttggctaaagcagtccagatccactatgatacccagcacaccatgtacttcgcctgagctagcaagcacgtcagccagtccacccgcggattccctttctctctgttatttacctctctctctttctctctttcttcttctgccacctctctctctctccttgtagtccgtctttctctcttcacactcattctacattttctgaatctgcaccaaagcggctcttggacgggggaatctgccgcgtctttacacccggcaggtttttttgtttcaaggaacaatttccaaccagcgttcccaacccgagccgccttttcaaaccagcaatccagcactgcgagccccgcagaggggtttccactgcacaaaagaagaaacaaaaccgtacatactacaagttgagccattattttgagtttgttttttttctatttgaatgtctgcactcttgtgtttgtaagatacactgagcaagggagtggattggcacagtttgtgtcagcgcagctctttagctctcccagctaagcaggactcttatctacttttacctcaaagcccctttgggcaaaaatctgtcacaaggtcttgggtttattgggtggaggggaggggactatacaggaaaagagctggagggaggggagtcgaccttttgagaatgatatatatatatttttcctttttatgagcgtgtgttttaactttttctcctttaccgtcttttacaagcgaggtgacctgggtgtcatgcccattactactttcctcccatcttagcaaagaagtctttatgtgtgagtgcgtgtatgtgtgcatctctgtatatacatgttctgctgtatatgagtgtttgtgagcgcacgtgtgtttcatggcaggccactgaattgtaaagggaaatcaaggagataactgctgtaaatgcctcagatttgttgtttttatattcacacatacagtacatataagcatatatttacatctatagagcaactttgagacatatgacttaaaacaggcctcacagaggctggtgtgggtatttgtagcagccctgaatcacttcttaatcgaaatgcgttcagttatgagttagcttgatgccaatgctagaaacaaggtgccttcgtgtgcctaaaaaatgaagtaattgagtgtttttgaatattaagtgagttcaggtctgacgtgtagcagtagtaaccgcggtctggcctgtgactggctcagcattgggacctgttgaacggctgaaggcataaacgcagaatacggtcttatcagcctttctgtgtgaaagcaggatcttaattttttttggacctgaaagatattatgacgacactgctgggcgttgctttactttgtttttttctttttgtattagtttcaagggccggaaaccaatgtagttttttgtttattttgaggtctcctttgctaactggccaactcattgcactgacccgggacgctaggcaagcaacagagggcactctcaatctctcttacctttatgcatttatacatacgaatcaacaaagcagatttgtaaaagtttaatataagatgttttgtggttatcttaaaaaaagaactgttgtttagacttagtagtttaccattgatgttgttgttgttatcgttgttgtcaatgttgttactattgtgatgaaattttaaggttggcggacaaagccagttctatagttactagtacgattcaggaatagatttcagttttcgagctgcaggtgaaagggggtagagctttgggttttattttgtagcattcgggttcataatgagaagaagtaaggccccaggacggatgctacctcggtaggacgagcgtcaaatctagcggcaggttcaaggtaacgtgtagcactccagatctgccgctgtgtttatcattcagctggcttctgtgggattaagatcagatagatggagacaatcagggattgtaatcagagtgaacctagattaagggattctgttgaagcgataggcaatgagttgaatttttagactttttaaaaatggtttctattatctgtgtgtatttgaagtatacccatcttaaagtctcttaaagctatttgactgtgtttgttccagatttttatgcatttttaacactggattaaatgaatcgacaataagcataagcactgccctcggaccccgtgtacaaacacttatggtgccccctggtgtcgcaattggggaaaaaacgcaggatagggactgaagggagggaggtcgacgtgcacgcctcatcagggggggaacggctcagtgaaaacgcttttgtaataaaccacccgtaaagcagcaggtttactatgaatgagtttgagcacccgcctgttggaggcgtgggcgttggcgcgggcaggaaccgaggagagctggtaaggggaaggcaagggtcgataatagggaagggggttgtccaggcattgcatgcaataagtttttgttaaaaaagggcagatcagattttaaaacatgcactagctctaagcaaacccggctgtggttaaacattcatctggcatctctaaagggggtttttatacaagattagatcctgaaactccagtctgaagaacagtcactccctgtttgtaacattgcaaagcaatattaaacccagttctagtttcaaacacggataaacaaagctataattctactcattgtggttgttggtctactctcgcagttgtgtctctgtactttttatttttttaacttttagttcatttgatttgcttgtatcaatcagtgggaatgtgcatttggtggaatagttatgtaggctttagacaatgtttcttttttcaagtaacaaaatgtagactttgctcgcctgcatgccagagtatcgtcctttttgaaaaaagacaaaaaaacttttttggaatcatatttattatgagaaagaaaacatataaatgcttttttgggtaaatgtttatggatttagtgggactgttttaggctagcaatatttgtccagtctctccaagacacattttaaagattcctacacaaatgtcagtaattttaggaggtacactctttctggaggggagggggtcggatctttgcatcgtgttcaaatccaaacgaggtactttcttcaaacgtgaaccatgtgaaagaacgaagccctctcctcctttgccaggttactgcaggggagcgtccacttaagtctcctcgctcctggtttgtacctgtggccacacctcctggttggggctctcctgtctccatggcaactacgctgacccctcacgaatgcacttcctctttgtgtcggggtcctggagcaggattccctctttttaacctttttagaaaaagatccataaatctttctgtgccccgatattcagagagcatgaattatttttaaattcctctcactttgatatattgttatatcttaacagatttgtaatttgacattgtgtatcgtgtattttatttgcccttctttcagttcctgtttttcggggggatttgttatagctttgctctgtttcttttcctttctgctagtggtctctgaagctgtgtctgattgtctcatagcaatagaatcacagagttggaacattccgattctgtgaatgaacggaatccttccagttgtgaggaggcggggttatgttgtagctccacctcctagcagagggccattcaaacgctggtattgctattatgtgacatgttcaaattcatttttttttttagcctgcagggaattcttgtgttaatgtgcaaagtaataaattggtattttatgcccat
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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