2024-04-18 18:21:28, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_041388176 3451 bp mRNA linear PLN 15-SEP-2021 DEFINITION Suillus subalutaceus NRDE-2, necessary for RNA interference-domain-containing protein (DFJ58DRAFT_757109), mRNA. ACCESSION XM_041388176 VERSION XM_041388176.1 DBLINK BioProject: PRJNA727283 BioSample: SAMN09070715 KEYWORDS RefSeq. SOURCE Suillus subalutaceus ORGANISM Suillus subalutaceus Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Boletales; Suillineae; Suillaceae; Suillus. REFERENCE 1 (bases 1 to 3451) AUTHORS Lofgren,L.A., Nguyen,N.H., Vilgalys,R., Ruytinx,J., Liao,H.L., Branco,S., Kuo,A., LaButti,K., Lipzen,A., Andreopoulos,W., Pangilinan,J., Riley,R., Hundley,H., Na,H., Barry,K., Grigoriev,I.V., Stajich,J.E. and Kennedy,P.G. TITLE Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi JOURNAL New Phytol (2020) In press PUBMED 33355923 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 3451) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-SEP-2021) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3451) AUTHORS Kuo,A., Lofgren,L.A., Vilgalys,R., Nguyen,N.H., Ruytinx,J., Liao,H.-L., Branco,S., LaButti,K., Lipzen,A., Andreopoulos,W., Pangilinan,J., Riley,R., Hundley,H., Na,H., Grigoriev,I., Barry,K., Stajich,J.E. and Kennedy,P.G. CONSRTM DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (23-APR-2020) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_024540252). ##Metadata-START## Organism Display Name :: Suillus subalutaceus FC151 v1.0 GOLD Stamp ID :: Gp0217369 ##Metadata-END## FEATURES Location/Qualifiers source 1..3451 /organism="Suillus subalutaceus" /mol_type="mRNA" /strain="FC151" /db_xref="taxon:48586" /chromosome="Unknown" /country="USA: Minnesota" /lat_lon="46.6959 N 92.3308 W" gene 1..3451 /locus_tag="DFJ58DRAFT_757109" /db_xref="GeneID:64682625" CDS 127..3375 /locus_tag="DFJ58DRAFT_757109" /codon_start=1 /product="NRDE-2, necessary for RNA interference-domain-containing protein" /protein_id="XP_041250683.1" /db_xref="GeneID:64682625" /db_xref="InterPro:IPR013633" /db_xref="JGIDB:Suisu1_757109" /translation="
MSSPSFSSFPPSFASFPDLDPGPSKNTLDRTRNENPTGARENDRIVKKDKNRRGSKKLRNEARKDKKHKTAEHDLEPVLPRQHGHTWKEVSIPDDEKIKAEEDRRLAQSDIQESRWDSRPAFISDRKGDQLNVTYGGIHAGNVPKYHIVNRGRSILGLDGDWAIYRRGKGIEINIGRRHKQPALTDSSVTTLLAAPPSRRIIGSGDSYKHEEVDGFLRLPSDRGHKAAEDYRSVTRQQEHPDSDSQSSASDDSSGDESGTPILTSYQLSLKTLEQQLAADPSSVEMWLSLVRHSLSNIPVTSKNATKARAEITLAILTRARAAHPHNRSSRILFLKYLRAGEEVWHESKTKAEWEEALKLDGIEIWMEWLEWRIRTTAGGVDTSVTDATRVLSALGSSESREIDKLRVVWRVAVAFQQAGYYERTTALFQAQAELTFEVPQSLYGLPLESQVESLEEFWESETPRAGESGAKGWGDWISRGRPDISGPPLKAVPQMDVDIQSKDPYVQWHYDESRADRTSRVPARSVDTMSESDPYATVLLSDIKALLLPLRTEGAKNAFRLIWLSVLGLHIPGLAETLSQGSWDDRWSFTYLCSFSRLDSIFPATVGQRQLMADSRAGTLIGREREFSSAFGPIKEWSRDALGPLEWVGQEKWRMWAAVDLQGIDQDFVRAVFKQLRCGSEDYEWDIHALAFEAALNIKSALKLSRTFLSTARDSLPHWATHARLERLREHVDDARKIYQTVLVASQRPPSQPFVGQLWWDWAEMEWLNGDQNAALRVIQHSVNIEGAGGMVVLRVKRALDDTISCAHEQWKDREGWIKLRALIELLTSSSQDGALTIFDSQPSVNESSDPRESMMVASLMLLYNHSVMLRSPTPPAVLRDRLQIAVGTYPDNSLVLGMFLEAEKGHGIWGRVRAQLRQSTADGGPREKSISRRIAEVWVAGWEKGRWQSEIERTRSGLTAAAESERTTGSAILWRVILEFEVRVGELQRAKKLLYRAVNECPLAKDLYMMAFGPLRSVFSARELDGFADIMAERGIRMRKGVDEYRMTGGDESGSGSEDLDGSEDEIEHEARQRRLLMPY"
misc_feature 487..>603 /locus_tag="DFJ58DRAFT_757109" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature 943..1833 /locus_tag="DFJ58DRAFT_757109" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
gaaacgttgatgatccatcgagtctggacagatttgagaatacagctccttgcacagcacaagccacccagctgacttctacaacgaccgaattgtttgatgctccttccttgagctccattcgaaatgtcctcaccctcattttcgtcttttccaccctcgtttgcctcgttcccagaccttgaccctggaccgagtaagaataccctggaccggacgcgaaatgaaaaccccacaggcgctcgggagaacgatagaattgttaaaaaggataagaaccgacgtggcagcaagaaattgcgaaacgaggctcgaaaagacaagaagcataagacagcagagcacgaccttgagccggtacttcccaggcaacacggacatacatggaaggaagtaagcataccggatgatgagaaaatcaaggccgaggaggacagacgtcttgctcagagtgatattcaagaaagccgatgggattctcgcccagcgttcatctctgatcggaaaggtgaccaactaaatgttacctatggcggtattcacgctggtaatgttcccaagtaccatatcgtaaaccgtggtagaagtattcttggtcttgatggggactgggctatctatcgcagaggtaagggcatagagataaacataggaaggaggcataagcaaccagccctgactgactcgagcgtgacgacattattggcagcacccccgtctcgacgcattattggatccggggatagttacaagcatgaagaggtggacggtttcttgcgactaccctccgaccgtggtcacaaagctgccgaagactatcgttctgtaaccaggcagcaagaacaccctgattcagactctcagtcgtctgcttcagatgacagctcaggcgatgagtcaggaacacccattctcacatcatatcagttatctttgaagacactcgagcagcaattggctgctgatccatcttcagtcgagatgtggttgtcactcgtgagacactcattgtcgaacatccccgtcacctcgaaaaacgcgaccaaagctcgcgcagagataacacttgctattcttacccgtgctcgtgctgcccatccacacaaccggtcatctcgcattctattcctgaagtacctaagggcaggagaggaagtctggcatgagagtaaaaccaaggccgagtgggaggaagccctgaaacttgacggaattgaaatttggatggaatggcttgaatggcggattcgtaccactgccggtggagttgacacgtcagtcacggatgcgacgcgcgtcttaagcgcgctcggtagctctgaaagccgtgaaattgataaactacgagtcgtgtggcgagttgcagtcgcatttcaacaagcaggctactatgaacgtaccacagccttattccaggcacaagcggaactaacatttgaggtaccccagtcattgtatggacttccccttgaatcgcaagtggaatccctcgaagaattttgggagtccgaaacaccgcgcgccggcgagtctggagcgaaaggttggggtgactggatctcacgcggtagacctgatatctccggtcccccgctgaaggcagttccccagatggacgttgacatccaatcgaaagatccatatgtccaatggcattacgatgagtcgcgcgccgatcgcacatcacgtgtgcccgcccgctccgtggacacaatgagcgagtctgacccatacgcaacagttctgctttcggatatcaaggcactactgttgcctctccgcacggaaggtgccaagaatgcgttccgcctaatttggttatccgttctaggcttgcatattcctggtctcgcagaaacactgtcgcagggatcatgggatgaccgatggtcattcacttacctctgttctttctcgcggttggactcgatttttcctgctactgtgggacagcggcagttgatggctgactctcgtgctggcacgctcatagggagagaacgagaattttctagtgcattcggtccgatcaaagagtggagtcgcgatgccctcggaccgttggagtgggtaggccaagagaagtggcgcatgtgggctgctgttgatctgcaagggatcgaccaggatttcgtacgagccgtgttcaagcagctcaggtgcggtagcgaggactatgagtgggatattcacgcattagcatttgaggcagctcttaatatcaaaagtgccctgaagctctcgcggacgtttttgtcgacagcacgagattctctaccgcactgggcaacccacgcacgtcttgagcgcttgcgcgagcacgtggatgatgcccgtaagatctatcaaacggtacttgtagcctctcagcgcccgcccagccagcctttcgttggtcagttatggtgggattgggctgaaatggaatggctcaatggtgaccaaaatgcggcactacgtgttatccagcactcagtcaacatcgaaggtgcgggtggtatggtggttcttcgtgtaaagcgcgccctcgatgatacgattagctgcgctcacgagcagtggaaggaccgagagggttggataaaactgcgagccttgatcgaactgcttacttcctcatctcaagatggggcactcacgatctttgactctcagccgagcgttaatgagagctccgatccgagagagagcatgatggtggcatctcttatgctattgtacaatcattcagttatgctacgaagtcctactccgccagctgtcctgagggatcgactgcagattgctgtcggaacttaccccgacaatagcctggtgttgggaatgtttctagaagctgagaaggggcatggtatctggggtcgcgtacgcgcccaactccgacaaagcacggctgatgggggcccgagggaaaagagcatttcacggcgtatcgcagaagtgtgggtggctgggtgggagaaagggcgatggcagagtgagatcgaaaggacgaggagcgggcttactgcggctgcggagagtgagaggacgacgggaagcgctattttgtggcgcgtcatattggaatttgaggttcgggtcggggagctgcaaagggcaaagaaactgctctacagagcagtgaatgaatgtccgcttgccaaagatttatatatgatggcttttgggccgcttcgttctgtgtttagtgctcgcgagcttgatggattcgcggacattatggcagaaaggggtatccggatgaggaaaggtgtagatgaatacaggatgactggcggagatgaaagcggttctggtagcgaagatctggatggttccgaggatgagatcgaacacgaggcgaggcagaggcgactactaatgccatactagttcggtatactgcgaaggctgtacgcttccttctcctggtgtacaaataaatacaacttgatattgttttggttta
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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