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2021-12-06 06:05:53, GGRNA.v2 : RefSeq release 208 (Sep, 2021)

LOCUS       XM_041388176            3451 bp    mRNA    linear   PLN 06-MAY-2021
DEFINITION  Suillus subalutaceus NRDE-2, necessary for RNA
            interference-domain-containing protein (DFJ58DRAFT_757109), mRNA.
ACCESSION   XM_041388176
VERSION     XM_041388176.1
DBLINK      BioProject: PRJNA727283
            BioSample: SAMN09070715
KEYWORDS    RefSeq.
SOURCE      Suillus subalutaceus
  ORGANISM  Suillus subalutaceus
            Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina;
            Agaricomycetes; Agaricomycetidae; Boletales; Suillineae;
            Suillaceae; Suillus.
REFERENCE   1  (bases 1 to 3451)
  AUTHORS   Lofgren,L.A., Nguyen,N.H., Vilgalys,R., Ruytinx,J., Liao,H.L.,
            Branco,S., Kuo,A., LaButti,K., Lipzen,A., Andreopoulos,W.,
            Pangilinan,J., Riley,R., Hundley,H., Na,H., Barry,K.,
            Grigoriev,I.V., Stajich,J.E. and Kennedy,P.G.
  TITLE     Comparative genomics reveals dynamic genome evolution in host
            specialist ectomycorrhizal fungi
  JOURNAL   New Phytol (2020) In press
   PUBMED   33355923
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3451)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-MAY-2021) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 3451)
  AUTHORS   Kuo,A., Lofgren,L.A., Vilgalys,R., Nguyen,N.H., Ruytinx,J.,
            Liao,H.-L., Branco,S., LaButti,K., Lipzen,A., Andreopoulos,W.,
            Pangilinan,J., Riley,R., Hundley,H., Na,H., Grigoriev,I., Barry,K.,
            Stajich,J.E. and Kennedy,P.G.
  CONSRTM   DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (23-APR-2020) DOE Joint Genome Institute, 2800 Mitchell
            Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_024540252).
            
            ##Metadata-START##
            Organism Display Name :: Suillus subalutaceus FC151 v1.0
            GOLD Stamp ID         :: Gp0217369
            ##Metadata-END##
FEATURES             Location/Qualifiers
     source          1..3451
                     /organism="Suillus subalutaceus"
                     /mol_type="mRNA"
                     /strain="FC151"
                     /db_xref="taxon:48586"
                     /chromosome="Unknown"
                     /country="USA: Minnesota"
                     /lat_lon="46.6959 N 92.3308 W"
     gene            1..3451
                     /locus_tag="DFJ58DRAFT_757109"
                     /db_xref="GeneID:64682625"
     CDS             127..3375
                     /locus_tag="DFJ58DRAFT_757109"
                     /codon_start=1
                     /product="NRDE-2, necessary for RNA
                     interference-domain-containing protein"
                     /protein_id="XP_041250683.1"
                     /db_xref="GeneID:64682625"
                     /db_xref="InterPro:IPR013633"
                     /db_xref="JGIDB:Suisu1_757109"
                     /translation="
MSSPSFSSFPPSFASFPDLDPGPSKNTLDRTRNENPTGARENDRIVKKDKNRRGSKKLRNEARKDKKHKTAEHDLEPVLPRQHGHTWKEVSIPDDEKIKAEEDRRLAQSDIQESRWDSRPAFISDRKGDQLNVTYGGIHAGNVPKYHIVNRGRSILGLDGDWAIYRRGKGIEINIGRRHKQPALTDSSVTTLLAAPPSRRIIGSGDSYKHEEVDGFLRLPSDRGHKAAEDYRSVTRQQEHPDSDSQSSASDDSSGDESGTPILTSYQLSLKTLEQQLAADPSSVEMWLSLVRHSLSNIPVTSKNATKARAEITLAILTRARAAHPHNRSSRILFLKYLRAGEEVWHESKTKAEWEEALKLDGIEIWMEWLEWRIRTTAGGVDTSVTDATRVLSALGSSESREIDKLRVVWRVAVAFQQAGYYERTTALFQAQAELTFEVPQSLYGLPLESQVESLEEFWESETPRAGESGAKGWGDWISRGRPDISGPPLKAVPQMDVDIQSKDPYVQWHYDESRADRTSRVPARSVDTMSESDPYATVLLSDIKALLLPLRTEGAKNAFRLIWLSVLGLHIPGLAETLSQGSWDDRWSFTYLCSFSRLDSIFPATVGQRQLMADSRAGTLIGREREFSSAFGPIKEWSRDALGPLEWVGQEKWRMWAAVDLQGIDQDFVRAVFKQLRCGSEDYEWDIHALAFEAALNIKSALKLSRTFLSTARDSLPHWATHARLERLREHVDDARKIYQTVLVASQRPPSQPFVGQLWWDWAEMEWLNGDQNAALRVIQHSVNIEGAGGMVVLRVKRALDDTISCAHEQWKDREGWIKLRALIELLTSSSQDGALTIFDSQPSVNESSDPRESMMVASLMLLYNHSVMLRSPTPPAVLRDRLQIAVGTYPDNSLVLGMFLEAEKGHGIWGRVRAQLRQSTADGGPREKSISRRIAEVWVAGWEKGRWQSEIERTRSGLTAAAESERTTGSAILWRVILEFEVRVGELQRAKKLLYRAVNECPLAKDLYMMAFGPLRSVFSARELDGFADIMAERGIRMRKGVDEYRMTGGDESGSGSEDLDGSEDEIEHEARQRRLLMPY"
     misc_feature    487..>603
                     /locus_tag="DFJ58DRAFT_757109"
                     /note="MTR4-interacting domain (MID) found in nuclear
                     exosome regulator NRDE2 and similar proteins; Region:
                     NRDE2_MID; cd22200"
                     /db_xref="CDD:412062"
     misc_feature    943..1833
                     /locus_tag="DFJ58DRAFT_757109"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:400637"
ORIGIN      
gaaacgttgatgatccatcgagtctggacagatttgagaatacagctccttgcacagcacaagccacccagctgacttctacaacgaccgaattgtttgatgctccttccttgagctccattcgaaatgtcctcaccctcattttcgtcttttccaccctcgtttgcctcgttcccagaccttgaccctggaccgagtaagaataccctggaccggacgcgaaatgaaaaccccacaggcgctcgggagaacgatagaattgttaaaaaggataagaaccgacgtggcagcaagaaattgcgaaacgaggctcgaaaagacaagaagcataagacagcagagcacgaccttgagccggtacttcccaggcaacacggacatacatggaaggaagtaagcataccggatgatgagaaaatcaaggccgaggaggacagacgtcttgctcagagtgatattcaagaaagccgatgggattctcgcccagcgttcatctctgatcggaaaggtgaccaactaaatgttacctatggcggtattcacgctggtaatgttcccaagtaccatatcgtaaaccgtggtagaagtattcttggtcttgatggggactgggctatctatcgcagaggtaagggcatagagataaacataggaaggaggcataagcaaccagccctgactgactcgagcgtgacgacattattggcagcacccccgtctcgacgcattattggatccggggatagttacaagcatgaagaggtggacggtttcttgcgactaccctccgaccgtggtcacaaagctgccgaagactatcgttctgtaaccaggcagcaagaacaccctgattcagactctcagtcgtctgcttcagatgacagctcaggcgatgagtcaggaacacccattctcacatcatatcagttatctttgaagacactcgagcagcaattggctgctgatccatcttcagtcgagatgtggttgtcactcgtgagacactcattgtcgaacatccccgtcacctcgaaaaacgcgaccaaagctcgcgcagagataacacttgctattcttacccgtgctcgtgctgcccatccacacaaccggtcatctcgcattctattcctgaagtacctaagggcaggagaggaagtctggcatgagagtaaaaccaaggccgagtgggaggaagccctgaaacttgacggaattgaaatttggatggaatggcttgaatggcggattcgtaccactgccggtggagttgacacgtcagtcacggatgcgacgcgcgtcttaagcgcgctcggtagctctgaaagccgtgaaattgataaactacgagtcgtgtggcgagttgcagtcgcatttcaacaagcaggctactatgaacgtaccacagccttattccaggcacaagcggaactaacatttgaggtaccccagtcattgtatggacttccccttgaatcgcaagtggaatccctcgaagaattttgggagtccgaaacaccgcgcgccggcgagtctggagcgaaaggttggggtgactggatctcacgcggtagacctgatatctccggtcccccgctgaaggcagttccccagatggacgttgacatccaatcgaaagatccatatgtccaatggcattacgatgagtcgcgcgccgatcgcacatcacgtgtgcccgcccgctccgtggacacaatgagcgagtctgacccatacgcaacagttctgctttcggatatcaaggcactactgttgcctctccgcacggaaggtgccaagaatgcgttccgcctaatttggttatccgttctaggcttgcatattcctggtctcgcagaaacactgtcgcagggatcatgggatgaccgatggtcattcacttacctctgttctttctcgcggttggactcgatttttcctgctactgtgggacagcggcagttgatggctgactctcgtgctggcacgctcatagggagagaacgagaattttctagtgcattcggtccgatcaaagagtggagtcgcgatgccctcggaccgttggagtgggtaggccaagagaagtggcgcatgtgggctgctgttgatctgcaagggatcgaccaggatttcgtacgagccgtgttcaagcagctcaggtgcggtagcgaggactatgagtgggatattcacgcattagcatttgaggcagctcttaatatcaaaagtgccctgaagctctcgcggacgtttttgtcgacagcacgagattctctaccgcactgggcaacccacgcacgtcttgagcgcttgcgcgagcacgtggatgatgcccgtaagatctatcaaacggtacttgtagcctctcagcgcccgcccagccagcctttcgttggtcagttatggtgggattgggctgaaatggaatggctcaatggtgaccaaaatgcggcactacgtgttatccagcactcagtcaacatcgaaggtgcgggtggtatggtggttcttcgtgtaaagcgcgccctcgatgatacgattagctgcgctcacgagcagtggaaggaccgagagggttggataaaactgcgagccttgatcgaactgcttacttcctcatctcaagatggggcactcacgatctttgactctcagccgagcgttaatgagagctccgatccgagagagagcatgatggtggcatctcttatgctattgtacaatcattcagttatgctacgaagtcctactccgccagctgtcctgagggatcgactgcagattgctgtcggaacttaccccgacaatagcctggtgttgggaatgtttctagaagctgagaaggggcatggtatctggggtcgcgtacgcgcccaactccgacaaagcacggctgatgggggcccgagggaaaagagcatttcacggcgtatcgcagaagtgtgggtggctgggtgggagaaagggcgatggcagagtgagatcgaaaggacgaggagcgggcttactgcggctgcggagagtgagaggacgacgggaagcgctattttgtggcgcgtcatattggaatttgaggttcgggtcggggagctgcaaagggcaaagaaactgctctacagagcagtgaatgaatgtccgcttgccaaagatttatatatgatggcttttgggccgcttcgttctgtgtttagtgctcgcgagcttgatggattcgcggacattatggcagaaaggggtatccggatgaggaaaggtgtagatgaatacaggatgactggcggagatgaaagcggttctggtagcgaagatctggatggttccgaggatgagatcgaacacgaggcgaggcagaggcgactactaatgccatactagttcggtatactgcgaaggctgtacgcttccttctcctggtgtacaaataaatacaacttgatattgttttggttta
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]