2024-04-19 12:26:39, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_041145686 696 bp mRNA linear PLN 03-MAY-2021 DEFINITION PREDICTED: Juglans microcarpa x Juglans regia uncharacterized LOC121247318 (LOC121247318), mRNA. ACCESSION XM_041145686 VERSION XM_041145686.1 DBLINK BioProject: PRJNA726248 KEYWORDS RefSeq; includes ab initio. SOURCE Juglans microcarpa x Juglans regia ORGANISM Juglans microcarpa x Juglans regia Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_054595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Juglans microcarpa x Juglans regia Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..696 /organism="Juglans microcarpa x Juglans regia" /mol_type="mRNA" /isolate="MS1-56" /db_xref="taxon:2249226" /chromosome="1S" /tissue_type="young leaves" /dev_stage="seedling" /country="USA: UC Davis" /note="This is the F1 progeny of a cross between Juglans microcarpa isolate 31.01 and Juglans regia cultivar Serr" gene 1..696 /gene="LOC121247318" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:121247318" CDS 1..696 /gene="LOC121247318" /codon_start=1 /product="uncharacterized protein LOC121247318" /protein_id="XP_041001620.1" /db_xref="GeneID:121247318" /translation="
MTIDRQVVAPTPEDVIETDEAKKNQSGKQVSQPEMTIDRQVVAPTPEDVIETDEAKKNQSGKQVSQPEMTIDRQVVAPTPEDVIETDEAKKNQRKLNVKKKAFLTEQVSALVLSETPQKLGDPGSPNISIIIGESGIERALLDLGSSVNLLPFSVNEELGLGELKKTSIMLQLVDRSVKVPRGIVEDVLVQATSTIYQALVILGSPFLAMSNALINCRSGVLTLTSGKHGT"
misc_feature 415..627 /gene="LOC121247318" /note="Cellular and retroviral pepsin-like aspartate proteases; Region: pepsin_retropepsin_like; cl11403" /db_xref="CDD:448244" misc_feature order(427..429,433..435,439..441,511..519,604..606) /gene="LOC121247318" /note="inhibitor binding site [active]" /db_xref="CDD:133137" misc_feature 427..435 /gene="LOC121247318" /note="catalytic motif [active]" /db_xref="CDD:133137" misc_feature 427..429 /gene="LOC121247318" /note="Catalytic residue [active]" /db_xref="CDD:133137" misc_feature order(511..522,532..543) /gene="LOC121247318" /note="Active site flap [active]" /db_xref="CDD:133137" ORIGIN
atgaccattgacagacaagtagttgctcctacacctgaagatgtaatagagactgatgaagccaaaaagaaccagagtggaaagcaagtttcccaaccagagatgaccattgacagacaagtagttgctcctacacctgaagatgtaatagagactgatgaagccaaaaagaaccagagtggaaagcaagtttcccaaccagagatgaccattgacagacaagtagttgctcctacacctgaagatgtaatagagactgatgaagccaaaaagaaccagaggaagctaaatgtaaagaagaaagctttcctaacagagcaagtcagtgcattggtattgagcgagactcctcagaagttaggagatcccggctctccgaacatttccattattatcggtgagtcaggcattgagagagctttacttgatttggggagtagtgtgaacttgctaccgttctcagtgaatgaggagttgggattaggtgagctaaaaaagacctctatcatgctacagttggttgacagatcagttaaagtgccaaggggtattgttgaggatgtgttggtccaggctacctccactatttaccaagctcttgtcattcttggaagcccatttctagctatgtcaaatgctttgattaattgcagaagtggagttttgacacttacttctgggaaacatggcacttga
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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