2024-04-24 06:07:32, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_040974198 7350 bp mRNA linear MAM 18-APR-2021 DEFINITION PREDICTED: Ochotona curzoniae argonaute RISC component 1 (AGO1), transcript variant X2, mRNA. ACCESSION XM_040974198 VERSION XM_040974198.1 DBLINK BioProject: PRJNA722036 KEYWORDS RefSeq. SOURCE Ochotona curzoniae (black-lipped pika) ORGANISM Ochotona curzoniae Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Ochotonidae; Ochotona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024465451.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ochotona curzoniae Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7350 /organism="Ochotona curzoniae" /mol_type="mRNA" /isolate="NIBS_2020" /db_xref="taxon:130825" /chromosome="Unknown" /tissue_type="cultured fibroblast cells from ears" /country="China: Qinghai-Tibet Plateau" gene 1..7350 /gene="AGO1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 mRNAs, 29 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:121152236" CDS 205..2778 /gene="AGO1" /codon_start=1 /product="protein argonaute-1 isoform X2" /protein_id="XP_040830132.1" /db_xref="GeneID:121152236" /translation="
MEAGPSGAAAGAYLPPLQQVFQAPRRPGIGTVGKPIKLLANYFEVDIPKIDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWLAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 304..696 /gene="AGO1" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:406799" misc_feature 724..876 /gene="AGO1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:400854" misc_feature 877..1239 /gene="AGO1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1033..1035,1078..1080,1120..1122,1132..1134, 1186..1188,1207..1209,1213..1215) /gene="AGO1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1372..2649 /gene="AGO1" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1783..1785,1795..1797,1831..1842,1849..1851, 1873..1875,1882..1884,1894..1896,1906..1908) /gene="AGO1" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1987..1989,1993..1995,2203..2205,2617..2619) /gene="AGO1" /note="active site" /db_xref="CDD:240015" ORIGIN
ccgggtgctcgcagggggagctgctgcaggctccgcggcggcggcggcaacggaggctgcgggggcggcggtgctagcggccgggcttggggggggatccgagcccggcccgggagcccgagcagcgagagtgcggggtacctaggcctttcacgctggactccacagtctccgggccgcctgacctccgcacgggtatatgggatggaagcgggaccctcgggagcagctgcaggtgcctacctgccccccctgcagcaggtgttccaggcacctcgccggcctggcattggcactgtggggaaaccaatcaagcttctggccaattactttgaagtggacatccctaagatcgacgtctaccactacgaggtggacatcaagccggacaagtgtcctcgcagagttaacagggaagtggtggaatacatggtccagcatttcaagcctcagatctttggtgatcgcaagcccgtgtatgatggaaagaagaacatttatactgtcacagcactgcccattggcaacgaacgggttgactttgaggtgacaatccctggggaaggaaaagatcgaatcttcaaggtctccatcaagtggctagccattgtgagctggcgcatgcttcatgaggccttggtcagtggccagatccctgttcccctggagtctgtgcaagccctggatgtggccatgagacatctggcatctatgaggtacacccctgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgcccagccatgtggaagatgatgctcaacattgatgtctcagccacagctttctacaaggcacagcccgtgattgagttcatgtgtgaggtgctggacatcaggaacatagatgaacagcccaagcccctcacggactctcagcgtgttcgcttcaccaaggagatcaagggcctgaaggtggaagtgacccactgtggacagatgaagaggaagtaccgcgtgtgtaatgttacccgccgccctgctagccatcagacgtttcccttgcagctggagagtggacagactgtggagtgcacagtggcacagtatttcaagcagaaatacaacctgcagctcaagtatccccatctaccctgcctgcaagttggccaggaacaaaagcacacctacttgcccttagaggtgtgtaacattgtggctgggcagcgctgcattaagaagctgactgacaaccagacctccaccatgataaaggctacggcacgttcggccccagaccgacaggaggagatcagccgactgatgaagaatgccagctacaacctggatccctacatccaggaatttgggatcaaagtaaaggatgacatgacggaggtgacagggcgagtgctgccggcgcccatcttgcagtacggcggccggaaccgggccattgccacacccaatcagggtgtctgggacatgcggggaaaacagttctacaatgggattgagatcaaagtctgggccattgcctgcttcgcaccccaaaaacagtgtcgagaagaggtgctcaagaacttcacagaccagctgcggaagatttccaaggatgcagggatgcctatccagggccagccctgcttctgcaagtacgcacagggtgcagacagtgtggagcccatgttccggcatctcaagaacacctactcagggctgcagctcatcatcgtcatcctgccaggaaagacaccagtgtatgctgaggtgaaacgtgttggagatacgcttttggggatggctacacagtgtgtgcaggtgaagaacgtggtcaagacctcgcctcagactctctccaacctttgcctcaagatcaatgtcaaacttggtggcattaacaacatcctagttccacaccagcgctctgctgtctttcaacagccagtgatattcctgggagcagatgttacacaccccccagcaggggatgggaaaaaaccttctattacagcagtagtaggcagtatggatgcccaccccagccgatactgtgctactgtgcgggtgcagagacctcggcaggagatcattgaagacttgtcctacatggtgcgtgagctgctcatccagttttacaaatctacccgcttcaagcctactcgcatcatcttctaccgagacggggtccctgaaggccagctcccacagatcctccactatgagctgctggccattcgtgatgcctgcatcaaactggaaaaggactaccagcctggcattacttacattgtggtgcagaagcgccatcacacccgccttttttgtgctgataagaacgagcgaattgggaagagtggtaacatcccagcagggacgactgtggacaccaacatcacccacccctttgagtttgacttctatctctgcagccacgcaggcatccagggcaccagccgaccttcccattactatgtcctttgggatgacaaccgcttcacagcagatgagctccagatcttgacataccagctgtgccacacttacgtacgatgcacacgttctgtctctatcccagcacctgcctactatgctcgtttggtggctttccgggcacgatatcatctggtggacaaggagcatgacagtggagagggaagtcacatatcggggcagagcaatgggcgggacccccaggctctggccaaagccgtgcaggttcaccaggacactctgcgcaccatgtacttcgcttgaaggaacgctgttacctcactggatagaagaaagctttccaagccccaggagttgtgccatccaaattcagaggaagcaaggaggagggaagtggggtagggaagagtgcagaaggccttatttctttctgaagagtgggtataagggttggaagcagggccagcaagacagaccaccagcgagaaatctctgaaatcaacctcatgccccccacccttcaccccatcttgttacatctggccctgaccccactggaccaagaggggcagcacagatgtccgccatccacacagatgtcttatgtgactcacagtgcttaaagactcatctggacagcttggttaaggttggctccgcagccctgtggacaaaagctggtaggtttgggtttaatcctgtagatgggaaaatgaggggcttgagaaaatgggtgggagagggaaggattttttaggagccttaatcagaaaagctctagatttgtttaagaagaaaaatgaaatcagacccagatcaatattttaggatactagatgttttaatgggttcggaatccagtttgtagcaagatttttaatgctaatggttttggttgctcctcccccagctgccaccacccttgcccgtattcctgtctccacatttttctaccccacctgacacctccctgacagacatctagcccctagtaacacttaaggcactatggcacttagctctgaagtgacacgaccctgtcttccttccgcctgctggtgggtaaccagtgccttccctgtaacggtatgctgcagaactgcaaccttttgtacctttctttgggggataggggtgggggtgggagaggaggtaggtggggaagaaatatccagaaaccaacaggcctcaagccagctattttgcatttgaaggaattgacttctgtgttcaataagctttttaaaagatcacaacctcaagatggttcggatccattgacatttgcactttcagacacgaccagtctaggagctgctgagatgactggccccaggcctttccactgaagcctccttttctgcccccatcacccctacctcctaccccacaggggcccagagttaactttcataacatttcgcactgttggtttctttttctcttctgatggtcaaatctcttaatttcaatatttcttaactggggtatcttgcaacgaatgatcctggtctaaaatgaggaaaaaaaaacactgaatattatttttatatcacaacttgagtctgttgccaaaatctggaagtccttcccatacctgatgagtttacatcccgcaaacattgagccgtcagaaggaactctggacctgatttgttctctggcctggctaggtaggggctagggaattccccaagatggggctcaggccctcacattcctctgtgcagataaaaccttttcttgttacagactccctcctctgcactggcctgcactctaccctgcaagtgcatctttcctttcctctgggctgccctttgatcctttggctcatcccaaattccagcgtgtcctgtggacaggttgggcatttttgctgctcccaattgcttctgtttacacaaatgaacttttcctattttcccactagggcatgtgagtgggtggcatgggctttttttttttccccccttttttttcttgttttgagatgagggatttgactattgtgggactggagacgaaaggtgttcctacttcgtcccttttgtctttgactgttttctttttctttttttttttttcctgcctcactggttggatggggacttacacactcagtgtggagattcctttttttgagagcctgggcttgggtttgtcccactctggtcatgaagtcatggtacgtcgggcctagcccaggcttggagaccagtctgaggaaggtgggtctgaattctggcctgtggagttggagctgccctgtcttctccccagcaacccttgtacagacccagatttgctatgcaaaacaatctttcccaggttctgttctggttggctacattgttcagcaacttcacaaaatgtagcacaaacattcattatggagaaagcatcaggactattgagtaaactcctcttactccttcctttttttcttgctggctatagcatggggtgccccatgggcacaagtccagctgaagagcagaatggagggctctgggaggagacagctcactggagagtccacattccttacacaagtgcctaaagagagtgatgccaacactccatctgccctgtccatcgccttcataaacagtctactgcgtattccgtcaccctttggggagggagctctctttggacagtaggctctgcatgttctcacttggatacattttgggactgcagttaagggcactattcctggagggtccagtcattcaccagcatttgcaaatgtccctaaagagcaggtggcagctactactcccagcaacaaatttgtgttctctccttgtccctctctgcctcactctctccagttgggttttgagctgggacttttgatgcattttagccctctggtattgcacatgccatgcttggtcattgacaagaaaattacttcttgctttgagtttcacttgcttctttgaaaagtacccctgatcttgtgaattattcttgcttgaaaagtggtacacgtagactaaaacgtggcgttggcagcacacttcaacttgcatagacttagtttaaacggtgcttcttactgaagctgtgaggagacaccagggagcacccagcctcaacttcttaaacaggtttctcaattccttgatcccactgttttgccttccttttcctcttactttccatggctccccttttccttcctttccccccaccccccaatcactctgcttgctttctggcctgcctatctgcatgtgtgataatgaattctctgcatggcttcgatgatcccattgttagctggcaagatcaggcgtggctccttggctacaaaagatcaaaagtctgtgctccttatccaggggtgttaactcttaactctgagttggactattaataaacttacagtggagcagagtagcaggcttgcccagctgacatgaaattgggagggcttctggcagtttccattcctatccactcctttgaactggtttctctctcattgctttttctagacctgcttccttttctttcttccttgggttgagctacttgggtctccagggttggaagtgaagggatggacataggatagcagagagtgaaaatgtgagaatggagagagcttagctgaaagatgggaaaggacagcactgctctttgtttatccagtccagcttgacccatggaggataaggtgctactgctagcttctgggataggataggcctgaggctactattgctgggaatttaggcttagaataaagctgaagcaggcacctgaaggtgtaaaactcccctccaatgctcctggttcccacctgctaaatagctgctctgtggcctctctggctaagcagcaatgtttttagattgtttattttgttctgtttttgtccagagtcttgtaaatgaggattcatttgtaatgggcagccaaggggacactgacttcttagctggctcacagttatgtctgcaaggttcggcaggacagtcctttagagatggcatgatgtgttaacaaaggatggaaatttcttcccctttggagtagaaaagttatctcaaactagccaaaaggcaggttttgggaattatgtctgggaaagtcggttttatttattcactgggcctaggccgatgcaggatggtagctgggatgccttccttcttagtctgatcatggcagggatgtgcagggcactctttcctatttgaccttctaagcggactggggaagagggcttctctggttttctttttctcctcccttgctaggacttgccctctccctgggcagggggagaggctgggttggtgctctcccttttctctactcctactgacctagaacctctggctgctgtttggaagctcaagaaagggagtggaaaaaatgaactcaaaacagaatgaattgggaaggacaaatttccttcttttaaaaggaaaataggaaaccctccaagaattgtgcaagtaaaggcaatgtgtcaaatgcactgagtcccctgatgtagtagcaataaggaaaaatgaaattacttccctgggcacacagtccaacctacttggtgtatgacgttgcacttagcagccatgtgatgggcatgtgtgactactctgggtttcactttagtttttacactttttatccctctcaagtccagcatggatggggaaatgtccctggagccccagagctgtgtacttgtttgcatttgtttccctttgagacttgtgtttgtgtcctgctttgagctgtaccttgtccagtccattgtgaaattatcccagcagctgtaatgtacagttccctctgaagcaagcaacagcagcacaattctgtgttttataaagacaacagtggctt
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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