2024-04-27 04:21:53, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_040974197 7332 bp mRNA linear MAM 18-APR-2021 DEFINITION PREDICTED: Ochotona curzoniae argonaute RISC component 1 (AGO1), transcript variant X1, mRNA. ACCESSION XM_040974197 VERSION XM_040974197.1 DBLINK BioProject: PRJNA722036 KEYWORDS RefSeq. SOURCE Ochotona curzoniae (black-lipped pika) ORGANISM Ochotona curzoniae Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Ochotonidae; Ochotona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024465451.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ochotona curzoniae Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7332 /organism="Ochotona curzoniae" /mol_type="mRNA" /isolate="NIBS_2020" /db_xref="taxon:130825" /chromosome="Unknown" /tissue_type="cultured fibroblast cells from ears" /country="China: Qinghai-Tibet Plateau" gene 1..7332 /gene="AGO1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:121152236" CDS 178..2760 /gene="AGO1" /codon_start=1 /product="protein argonaute-1 isoform X1" /protein_id="XP_040830131.1" /db_xref="GeneID:121152236" /translation="
MEAGPSGAAAGAYLPPLQQVFQAPRRPGIGTVGKPIKLLANYFEVDIPKIDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWLAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRVSRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 277..669 /gene="AGO1" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 697..849 /gene="AGO1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 850..1212 /gene="AGO1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1006..1008,1051..1053,1093..1095,1105..1107, 1159..1161,1180..1182,1186..1188) /gene="AGO1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1345..2631 /gene="AGO1" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1765..1767,1777..1779,1813..1824,1831..1833, 1855..1857,1864..1866,1876..1878,1888..1890) /gene="AGO1" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1969..1971,1975..1977,2185..2187,2599..2601) /gene="AGO1" /note="active site" /db_xref="CDD:240015" ORIGIN
aggctccgcggcggcggcggcaacggaggctgcgggggcggcggtgctagcggccgggcttggggggggatccgagcccggcccgggagcccgagcagcgagagtgcggggtacctaggcctttcacgctggactccacagtctccgggccgcctgacctccgcacgggtatatgggatggaagcgggaccctcgggagcagctgcaggtgcctacctgccccccctgcagcaggtgttccaggcacctcgccggcctggcattggcactgtggggaaaccaatcaagcttctggccaattactttgaagtggacatccctaagatcgacgtctaccactacgaggtggacatcaagccggacaagtgtcctcgcagagttaacagggaagtggtggaatacatggtccagcatttcaagcctcagatctttggtgatcgcaagcccgtgtatgatggaaagaagaacatttatactgtcacagcactgcccattggcaacgaacgggttgactttgaggtgacaatccctggggaaggaaaagatcgaatcttcaaggtctccatcaagtggctagccattgtgagctggcgcatgcttcatgaggccttggtcagtggccagatccctgttcccctggagtctgtgcaagccctggatgtggccatgagacatctggcatctatgaggtacacccctgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgcccagccatgtggaagatgatgctcaacattgatgtctcagccacagctttctacaaggcacagcccgtgattgagttcatgtgtgaggtgctggacatcaggaacatagatgaacagcccaagcccctcacggactctcagcgtgttcgcttcaccaaggagatcaagggcctgaaggtggaagtgacccactgtggacagatgaagaggaagtaccgcgtgtgtaatgttacccgccgccctgctagccatcagacgtttcccttgcagctggagagtggacagactgtggagtgcacagtggcacagtatttcaagcagaaatacaacctgcagctcaagtatccccatctaccctgcctgcaagttggccaggaacaaaagcacacctacttgcccttagaggtgtgtaacattgtggctgggcagcgctgcattaagaagctgactgacaaccagacctccaccatgataaaggctacggcacgttcggccccagaccgacaggaggagatcagccgactgatgaagaatgccagctacaacctggatccctacatccaggaatttgggatcaaagtaaaggatgacatgacggaggtgacagggcgagtgctgccggcgcccatcttgcagtacggcggccgggtgagcaggaaccgggccattgccacacccaatcagggtgtctgggacatgcggggaaaacagttctacaatgggattgagatcaaagtctgggccattgcctgcttcgcaccccaaaaacagtgtcgagaagaggtgctcaagaacttcacagaccagctgcggaagatttccaaggatgcagggatgcctatccagggccagccctgcttctgcaagtacgcacagggtgcagacagtgtggagcccatgttccggcatctcaagaacacctactcagggctgcagctcatcatcgtcatcctgccaggaaagacaccagtgtatgctgaggtgaaacgtgttggagatacgcttttggggatggctacacagtgtgtgcaggtgaagaacgtggtcaagacctcgcctcagactctctccaacctttgcctcaagatcaatgtcaaacttggtggcattaacaacatcctagttccacaccagcgctctgctgtctttcaacagccagtgatattcctgggagcagatgttacacaccccccagcaggggatgggaaaaaaccttctattacagcagtagtaggcagtatggatgcccaccccagccgatactgtgctactgtgcgggtgcagagacctcggcaggagatcattgaagacttgtcctacatggtgcgtgagctgctcatccagttttacaaatctacccgcttcaagcctactcgcatcatcttctaccgagacggggtccctgaaggccagctcccacagatcctccactatgagctgctggccattcgtgatgcctgcatcaaactggaaaaggactaccagcctggcattacttacattgtggtgcagaagcgccatcacacccgccttttttgtgctgataagaacgagcgaattgggaagagtggtaacatcccagcagggacgactgtggacaccaacatcacccacccctttgagtttgacttctatctctgcagccacgcaggcatccagggcaccagccgaccttcccattactatgtcctttgggatgacaaccgcttcacagcagatgagctccagatcttgacataccagctgtgccacacttacgtacgatgcacacgttctgtctctatcccagcacctgcctactatgctcgtttggtggctttccgggcacgatatcatctggtggacaaggagcatgacagtggagagggaagtcacatatcggggcagagcaatgggcgggacccccaggctctggccaaagccgtgcaggttcaccaggacactctgcgcaccatgtacttcgcttgaaggaacgctgttacctcactggatagaagaaagctttccaagccccaggagttgtgccatccaaattcagaggaagcaaggaggagggaagtggggtagggaagagtgcagaaggccttatttctttctgaagagtgggtataagggttggaagcagggccagcaagacagaccaccagcgagaaatctctgaaatcaacctcatgccccccacccttcaccccatcttgttacatctggccctgaccccactggaccaagaggggcagcacagatgtccgccatccacacagatgtcttatgtgactcacagtgcttaaagactcatctggacagcttggttaaggttggctccgcagccctgtggacaaaagctggtaggtttgggtttaatcctgtagatgggaaaatgaggggcttgagaaaatgggtgggagagggaaggattttttaggagccttaatcagaaaagctctagatttgtttaagaagaaaaatgaaatcagacccagatcaatattttaggatactagatgttttaatgggttcggaatccagtttgtagcaagatttttaatgctaatggttttggttgctcctcccccagctgccaccacccttgcccgtattcctgtctccacatttttctaccccacctgacacctccctgacagacatctagcccctagtaacacttaaggcactatggcacttagctctgaagtgacacgaccctgtcttccttccgcctgctggtgggtaaccagtgccttccctgtaacggtatgctgcagaactgcaaccttttgtacctttctttgggggataggggtgggggtgggagaggaggtaggtggggaagaaatatccagaaaccaacaggcctcaagccagctattttgcatttgaaggaattgacttctgtgttcaataagctttttaaaagatcacaacctcaagatggttcggatccattgacatttgcactttcagacacgaccagtctaggagctgctgagatgactggccccaggcctttccactgaagcctccttttctgcccccatcacccctacctcctaccccacaggggcccagagttaactttcataacatttcgcactgttggtttctttttctcttctgatggtcaaatctcttaatttcaatatttcttaactggggtatcttgcaacgaatgatcctggtctaaaatgaggaaaaaaaaacactgaatattatttttatatcacaacttgagtctgttgccaaaatctggaagtccttcccatacctgatgagtttacatcccgcaaacattgagccgtcagaaggaactctggacctgatttgttctctggcctggctaggtaggggctagggaattccccaagatggggctcaggccctcacattcctctgtgcagataaaaccttttcttgttacagactccctcctctgcactggcctgcactctaccctgcaagtgcatctttcctttcctctgggctgccctttgatcctttggctcatcccaaattccagcgtgtcctgtggacaggttgggcatttttgctgctcccaattgcttctgtttacacaaatgaacttttcctattttcccactagggcatgtgagtgggtggcatgggctttttttttttccccccttttttttcttgttttgagatgagggatttgactattgtgggactggagacgaaaggtgttcctacttcgtcccttttgtctttgactgttttctttttctttttttttttttcctgcctcactggttggatggggacttacacactcagtgtggagattcctttttttgagagcctgggcttgggtttgtcccactctggtcatgaagtcatggtacgtcgggcctagcccaggcttggagaccagtctgaggaaggtgggtctgaattctggcctgtggagttggagctgccctgtcttctccccagcaacccttgtacagacccagatttgctatgcaaaacaatctttcccaggttctgttctggttggctacattgttcagcaacttcacaaaatgtagcacaaacattcattatggagaaagcatcaggactattgagtaaactcctcttactccttcctttttttcttgctggctatagcatggggtgccccatgggcacaagtccagctgaagagcagaatggagggctctgggaggagacagctcactggagagtccacattccttacacaagtgcctaaagagagtgatgccaacactccatctgccctgtccatcgccttcataaacagtctactgcgtattccgtcaccctttggggagggagctctctttggacagtaggctctgcatgttctcacttggatacattttgggactgcagttaagggcactattcctggagggtccagtcattcaccagcatttgcaaatgtccctaaagagcaggtggcagctactactcccagcaacaaatttgtgttctctccttgtccctctctgcctcactctctccagttgggttttgagctgggacttttgatgcattttagccctctggtattgcacatgccatgcttggtcattgacaagaaaattacttcttgctttgagtttcacttgcttctttgaaaagtacccctgatcttgtgaattattcttgcttgaaaagtggtacacgtagactaaaacgtggcgttggcagcacacttcaacttgcatagacttagtttaaacggtgcttcttactgaagctgtgaggagacaccagggagcacccagcctcaacttcttaaacaggtttctcaattccttgatcccactgttttgccttccttttcctcttactttccatggctccccttttccttcctttccccccaccccccaatcactctgcttgctttctggcctgcctatctgcatgtgtgataatgaattctctgcatggcttcgatgatcccattgttagctggcaagatcaggcgtggctccttggctacaaaagatcaaaagtctgtgctccttatccaggggtgttaactcttaactctgagttggactattaataaacttacagtggagcagagtagcaggcttgcccagctgacatgaaattgggagggcttctggcagtttccattcctatccactcctttgaactggtttctctctcattgctttttctagacctgcttccttttctttcttccttgggttgagctacttgggtctccagggttggaagtgaagggatggacataggatagcagagagtgaaaatgtgagaatggagagagcttagctgaaagatgggaaaggacagcactgctctttgtttatccagtccagcttgacccatggaggataaggtgctactgctagcttctgggataggataggcctgaggctactattgctgggaatttaggcttagaataaagctgaagcaggcacctgaaggtgtaaaactcccctccaatgctcctggttcccacctgctaaatagctgctctgtggcctctctggctaagcagcaatgtttttagattgtttattttgttctgtttttgtccagagtcttgtaaatgaggattcatttgtaatgggcagccaaggggacactgacttcttagctggctcacagttatgtctgcaaggttcggcaggacagtcctttagagatggcatgatgtgttaacaaaggatggaaatttcttcccctttggagtagaaaagttatctcaaactagccaaaaggcaggttttgggaattatgtctgggaaagtcggttttatttattcactgggcctaggccgatgcaggatggtagctgggatgccttccttcttagtctgatcatggcagggatgtgcagggcactctttcctatttgaccttctaagcggactggggaagagggcttctctggttttctttttctcctcccttgctaggacttgccctctccctgggcagggggagaggctgggttggtgctctcccttttctctactcctactgacctagaacctctggctgctgtttggaagctcaagaaagggagtggaaaaaatgaactcaaaacagaatgaattgggaaggacaaatttccttcttttaaaaggaaaataggaaaccctccaagaattgtgcaagtaaaggcaatgtgtcaaatgcactgagtcccctgatgtagtagcaataaggaaaaatgaaattacttccctgggcacacagtccaacctacttggtgtatgacgttgcacttagcagccatgtgatgggcatgtgtgactactctgggtttcactttagtttttacactttttatccctctcaagtccagcatggatggggaaatgtccctggagccccagagctgtgtacttgtttgcatttgtttccctttgagacttgtgtttgtgtcctgctttgagctgtaccttgtccagtccattgtgaaattatcccagcagctgtaatgtacagttccctctgaagcaagcaacagcagcacaattctgtgttttataaagacaacagtggctt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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