2024-05-19 13:25:09, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_040934160 880 bp mRNA linear PLN 20-APR-2021 DEFINITION Cucurbitaria berberidis CBS 394.84 superoxide dismutase copper chaperone-like protein (K460DRAFT_370416), mRNA. ACCESSION XM_040934160 VERSION XM_040934160.1 DBLINK BioProject: PRJNA722002 BioSample: SAMN02691713 KEYWORDS RefSeq. SOURCE Cucurbitaria berberidis CBS 394.84 ORGANISM Cucurbitaria berberidis CBS 394.84 Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae; Cucurbitariaceae; Cucurbitaria. REFERENCE 1 (bases 1 to 880) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2021) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 2 (bases 1 to 880) AUTHORS Haridas,S., Albert,R., Binder,M., Bloem,J., Labutti,K., Salamov,A., Andreopoulos,B., Baker,S.E., Barry,K., Bills,G., Bluhm,B.H., Cannon,C., Castanera,R., Culley,D.E., Daum,C., Ezra,D., Gonzalez,J.B., Henrissat,B., Kuo,A., Liang,C., Lipzen,A., Lutzoni,F., Magnuson,J., Mondo,S., Nolan,M., Ohm,R., Pangilinan,J., Park,H.-J., Ramirez,L., Alfaro,M., Sun,H., Tritt,A., Yoshinaga,Y., Zwiers,L.-H., Turgeon,B.G., Goodwin,S.B., Spatafora,J.W., Crous,P.W. and Grigoriev,I.V. CONSRTM DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (26-JAN-2020) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_024468939). ##Metadata-START## Organism Display Name :: Cucurbitaria berberidis CBS 394.84 GOLD Stamp ID :: Gp0019330 ##Metadata-END## FEATURES Location/Qualifiers source 1..880 /organism="Cucurbitaria berberidis CBS 394.84" /mol_type="mRNA" /strain="CBS 394.84" /culture_collection="CBS:394.84" /db_xref="taxon:1168544" /chromosome="Unknown" gene 1..880 /locus_tag="K460DRAFT_370416" /db_xref="GeneID:63851411" CDS 59..793 /locus_tag="K460DRAFT_370416" /codon_start=1 /product="superoxide dismutase copper chaperone-like protein" /protein_id="XP_040785013.1" /db_xref="GeneID:63851411" /db_xref="InterPro:IPR001424" /db_xref="InterPro:IPR006121" /db_xref="JGIDB:Cucbe1_370416" /translation="
MTVPAFETTFAVPMTCQSCVKDIEGSLHQLSGINKITANLEHQLVSVEGTVAPSAIVEAIQATGRDAILRGSGKSESAAVCILESHASHVENKVRGLARMVEVAPGITVVDLSIRGLSPGTYHATVRESGDISEGPESTGGIWEALTAKKESKPSRGIFGTVEVGKGGDGAVFLDKPIQIWEMIGRSIVVAREQDGKFDKNDPDTLVGVIARSAGVWDNDKTVCSCSGKTVWQEREEQRDRGML"
misc_feature 59..757 /locus_tag="K460DRAFT_370416" /note="copper, zinc superoxide dismutase; Region: PLN02957" /db_xref="CDD:215516" ORIGIN
ctacgaaaacacctccccaccatattgaaaatctcagcgcgaatacacaacttgaacgatgacagtcccagcatttgaaactaccttcgcggtgcccatgacctgccaatcatgtgttaaggacattgaaggctcgctacatcaattgagtggcatcaacaaaatcactgccaacttggaacatcaactagtctcggttgaaggcacagttgcaccttcggctattgtagaagctatacaagctacgggccgtgatgctattctacgtggaagtggaaagtccgaaagtgcagcagtatgtatcctagaatcgcacgcttctcatgtagagaacaaggtacgcggattggcgcgcatggtcgaagttgctcccggtatcacggtcgtcgatctgagtataagaggactatctcctggaacctaccatgccacagttcgagaatctggagacatatctgagggtcctgaatctactggtggcatctgggaagctttgaccgcaaaaaaagagagcaaaccttctcgaggcatctttggcacagtcgaagtagggaaggggggcgatggtgctgtcttccttgacaaacctattcagatctgggagatgatcggccgcagcatagtggttgcaagagaacaggatggaaagttcgataagaatgatccggatacgctagtgggcgtcattgcacgcagcgctggcgtctgggacaatgacaaaaccgtgtgctcgtgctctggaaagacagtgtggcaggagagagaggaacagcgggaccgtggtatgctatgagcactatgatatgccaagatagatgaagctctccaagaagaatgaaatgccatccaactgctgtattcggtggccaggtgataacgc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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