2024-03-29 20:11:50, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_040619252 7187 bp mRNA linear MAM 09-APR-2021 DEFINITION PREDICTED: Ursus maritimus argonaute RISC component 1 (AGO1), mRNA. ACCESSION XM_040619252 VERSION XM_040619252.1 DBLINK BioProject: PRJNA717889 KEYWORDS RefSeq. SOURCE Ursus maritimus (polar bear) ORGANISM Ursus maritimus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024425786.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ursus maritimus Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7187 /organism="Ursus maritimus" /mol_type="mRNA" /isolate="PB19" /db_xref="taxon:29073" /chromosome="Unknown" /tissue_type="whole blood" /dev_stage="adult" gene 1..7187 /gene="AGO1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:103666390" CDS 165..2513 /gene="AGO1" /codon_start=1 /product="protein argonaute-1" /protein_id="XP_040475186.1" /db_xref="GeneID:103666390" /translation="
MVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWLAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 207..431 /gene="AGO1" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 459..611 /gene="AGO1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 612..974 /gene="AGO1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(768..770,813..815,855..857,867..869,921..923, 942..944,948..950) /gene="AGO1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1107..2384 /gene="AGO1" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1518..1520,1530..1532,1566..1577,1584..1586, 1608..1610,1617..1619,1629..1631,1641..1643) /gene="AGO1" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1722..1724,1728..1730,1938..1940,2352..2354) /gene="AGO1" /note="active site" /db_xref="CDD:240015" ORIGIN
tccaggcacctcgccggcctggcattggcactgtggggaaaccaatcaagctcctggccaattactttgaggtggacatccctaagattgacgtctaccactacgaggtggatatcaagccggataagtgtcctcgcagagtcaaccgggaagtggtggagtacatggtccagcatttcaagcctcagatttttggtgatcgcaagcctgtgtatgatggaaagaagaacatttacactgtcacagcactgcccattggcaatgaacgggttgactttgaggtgacaatccctggggaagggaaggatcgaatcttcaaggtctccatcaagtggctagctattgttagctggcgcatgctgcatgaggccctggtcagtggccagatccctgttcccttggagtctgtgcaagccctggatgtggccatgaggcacctggcatccatgaggtacacccccgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcagccactgccttctacaaggcacagccagtgattgagttcatgtgtgaggtgctggacatcaggaacatagatgagcagcccaagcccctcacagactctcagcgtgtgcgtttcaccaaggagatcaaaggcctaaaggtggaagtgacccactgtggacagatgaagaggaaataccgtgtgtgtaatgttacccgccgccctgccagccatcagacgtttcctttgcagctggagagtggacagacggtggagtgcacagtggcacagtatttcaagcagaaatataaccttcagctcaagtatccccacctgccctgcctgcaagttggccaggaacaaaagcatacctacctgcccttagaggtctgtaacattgtggctgggcagcgctgcattaagaagttgaccgacaaccagacttcgaccatgataaaggctacagctaggtcggccccagacagacaggaggagattagccgcctgatgaagaatgccagctacaacctagatccctacatccaggaatttgggatcaaagtgaaggatgacatgacggaggtgacggggcgagtgctgccggcgcccatcttgcagtacggcggccggaaccgggccattgccacacctaatcagggtgtctgggacatgcgggggaaacagttctacaatgggattgagatcaaagtctgggccatcgcctgcttcgcaccccaaaaacagtgtcgagaagaggtgctcaagaacttcacagaccaactgcggaagatttccaaggatgcagggatgcccatccagggccagccttgcttctgcaaatacgcgcagggggcagacagcgtggagcccatgttccggcatctcaagaacacctactcagggctgcagctcattatcgtcatcctgccagggaagacgccagtgtatgctgaagtgaaacgtgttggagatacactcttgggaatggctacacagtgtgtgcaagtgaagaatgtggtcaagacctcgcctcagactctgtccaacctctgcctgaagatcaatgtcaaacttggtggcattaacaacatcctagtcccacaccagcgctctgccgtctttcaacagccagtgatattcctgggagcagatgttacacaccccccagcaggggatgggaaaaaaccttctatcacagcagtggtaggcagtatggatgcccaccccagccgttactgtgctactgtgcgggtgcagcgaccccggcaggagatcattgaagacttatcctacatggtgcgtgagctgctcatccagttctacaagtctacccgcttcaagcctacccgcatcatcttctaccgagatggggttcctgaaggccagctcccccagatcctccactatgagctactggccattcgtgatgcctgcatcaaactggaaaaggactaccagcctgggatcacttacattgtggtgcagaaacgccatcatacccgccttttttgtgctgacaagaatgagcgaattgggaagagtggtaacatcccagctgggacaactgtggacacaaacatcacccacccatttgagtttgacttctatctgtgcagccatgcaggcatccagggcaccagccgaccatcccattactatgtcctttgggatgacaaccgtttcacagcggatgagctccagatcttgacataccagctgtgccacacttatgtacgatgcacacgctccgtctctatcccagcacctgcctactatgcccgcctggtggctttccgggcacgataccacctagtggacaaggagcatgacagtggagaggggagccacatatcggggcagagcaatgggcgggacccccaggccctggccaaagccgtgcaggttcaccaggatactctgcgcaccatgtacttcgcttgaaggcagaacgctgttacctcactggatagaagaaagctttccaagccccaagagctgtgccgcccaaatccagaggaagcaaggaggagggagggtagggaggagttcagaaggccttgtttccttctacaaagggggcaaaagggtggggaacagggccagtaagccagaccaccagccagaaatctctgatgtccacctcatgacccccactcctcaccccatcttgtcacatctggccctgaccccactggaccaagaggggcagcactggtgcccaccatactcacaggtgtctcatgtgactcacagtgctaaagactcatgcctgacagcttggtaaggtcggctctgcagccccgcggacaaaagctggtaggtttgggtttgctactttagatgggagagtgaggggcttgagaaagtgggtgggaggagggaaggattttttaggagccttaatcagaaaaggtctagatttgtttaagaggaaaaacgaaaccagacccagatcaatattttagaatactagatgttttaatgggttgaaaatccagtttgtaggaagatttttaatgctaatgattttggttgctcctcccccagctgccaccccccacctttcccttattcctttctctccaccttttctaccccacctcacacctcctccctgacaggcatccagcccctagtaagacttaaggcactatggcacttagctctgaagtgacacgaccctgtcttccttccgcctactggtgggtaaccagtgccttccctgtaacggtaatgctgcagaactgcaaccttttgtacctttctttggggggatggggtgggggtgggagaggaggtaggtggggaagaaatactcctaacccaacaagcctccagccagagcgccagctattttgcattcagaggaattgacttccatattcattgagcttttaagaagatcacaacctcaagatggttaaagtccattgacatttgcactttcagacatgacaagtcttggagctgctgagatgactggcccctggcctttccacttaacacctccttttctcgctgtccccccagcctccccatctgcctgggtctggagttactttcatagcatttctcattcgtggcttcttttttcccctgatggtcaagtcgcttatgtttcaatatttcttaactggggtgtcttataacaagaggtctaaacaaaggtctaaaataagaaaaaagagcaaaaactaaatgttatttttataccataacttgagtctattgccaaaatctggaaatccctcccatgcccaataagtttacatcccagaaacattgagccatcagcaggaactatgtacctgacttgttctttggcctggataggtagagggtggttatctccccatggcggagctcaggctccatccttcccctgtgcagataatatcttttcttactataggctccctcctctgcactgccctgcactctttcctgcaagtgcatcttccctttctctggactgtcctctgagactttggctcatccctggttccagtgtgtcttctggacaggctggagaattttgctgctccctattgcttctgtttacacaaatgaatttttcccagtttcccactagggcatgtgagtgggtggcatgggcctttgttttgttttgttttttgtctccctggataaagatggggtttggctgtcttgcagaactggaaaagtagggggtttctagcttggtgcctgctggccttgaggcaaggccccctctttccttaactgttcatttttttcctatcccactgcttgggatgaggagttgcaacttcagtgtggaaggtcctctttttgaggagcttgggcttgggtttgccccactctggtgatgaagccatgacactttacacctagctcaggcttggaggccggtctgaatcctggcctgtgtgcttagagctaccatttcccctccccagcagcccttgtacagacccagatttgctatgcaaaacagtctatcccaggttctgttctggttggctactttgttcagtgacttcacaaaacgtagcacaaacattgattatggagaaggcatcaggactgttgagtaactcctcctctacttctttcctcctggctacagcatggggtgccccatgggcacagcccagctgaagaatggaatggagggctctgggaggaggcagctcactggagagcctacattccttacacaagtgcctaaagagagtgatgccaacactccatctgccctgtccatcgccttcatatactgtctacttcgtgttccgtcaccctttggggaggggagctctcttgggacaatgggctctgcatgttctcttcttgggtgcatttaggggctgggatcagggcactgttcctggagggtccagtcattcaccagcatttgcaaatatccatagggagctggtggtagccacctactctcagcaacaagtttatgttctctcctttttctctctttgcctcactctctccatttaggttttgagctggggcctgaaatggattttttagccctttggcactgcacatgccattcaagaaataaaaagcaagagaagcggtttgggcaatggcaagaaaatgacttcttgctctgatttttttttttttttttaatctttgagacttgaaaaatacccttgaccttaagggttattcttgtttgaaagatggtgcatgcagattgagaagtggttttagcagcaagctttggctttcttggatttggtttaagtggtgcttcttacttgtgctctgaggaattgttggggggaccccagcctcatcctcttggacaggtctcttgctccctttgttctactctcttacctctcttttctacttctctctttccctggcatccttttccttttttcaattcactaagcttgtttgctggcctgcctgcctatgtgatgatgaattctctgcatggctatgataatcccactgttagctagcaaggtcaggcttagctccttggctgcagaagaccaagaatctgttccccaagcctggtaatgttctctctgggctggactgccatcaacgttacacaagggcagagcagcaggcctgcctacctggcgtgaaatcaggagggcttctgacaacttccatacctgtccactctttggagttgttttttctcattgcttttttctagatctggttccatttctctacctggggcctcccttttttgaggctgtcctagggttaagctacttggtttccagggttggagggtttggggttggacatgggggaagaagagagtgatgggaagagaatgaagagaatttggataaaagatgggaaagagcactgttcattggtcatttttccagtccagtctgacccatttgggggttgaggtgctactattgaactcgggataagcctggggctattgttgatgggaacttaggtttagaataatgttgacaaggaagatacctaaaagcatgaaacctccttaaaaagctcctggttcccacctactagatagctccactgtggccgcctctttggctaagcaacaatgttcttggatggttgttgttttgttttgttttgttttgttttgtttgggggggtggtccagaattcagtaaatgaggctagcactcaggatgggcagccaaggggacattttgaattcttagctggcccatggggtatctatctgcaaggctggtggggcagtgttttagacctggcatcatgtgtaacaaagaatggaagttccttccccttcagggtggaaagtcatctcaaactagccaaaatgcagttttggaaactatattgggggaagttattttttatatttactgggcctaggccaatccaggatggtagctgggatgccttccttcttaaagtctgatcatggcagggatatgcagggcactctttcctatttagccttctaagcagattggggaggagggattctctggttttctctttccccccttttattaggacttgccttctccctaggcagggagagaggctaggttggtgctctccccttactctattcctactgacttagaacctctggctgctgttttggagcctaagaatgggagtggagggagtgggctcaaaacaaaacagaataaggtggggaaggcagatttccttctttaaaaaggaaaataggaaaccctccaaggattgtgcaagtaaagacaatgtgtcaaatgcactgagtcccctggtgtagtagcaataaggaaaaatgaaatgactttcctgtgcacacagtccaacctgattggtgtgtgatgttgcacttagcagccatctggtgggcatgtgtgactactctgggtttcactttagtttctaaactttttatccctctcaagtccagcatggatggggaaatgtccctggagccccacagctgtgtacttgtttgcatttgtttccctttgagacttgtgtttgtgtcctgctttgagctgtaccttgtccagtccattgtaaaattatcccagcagctgtaatgtacagttccttctaaagcaagcaacagcagcagcacaattctgtgttttataaagacaacagtggcttcta
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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