2024-03-29 13:39:19, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_039731484 10289 bp mRNA linear VRT 24-FEB-2021 DEFINITION PREDICTED: Passer montanus argonaute RISC catalytic component 2 (AGO2), transcript variant X1, mRNA. ACCESSION XM_039731484 VERSION XM_039731484.1 DBLINK BioProject: PRJNA703052 KEYWORDS RefSeq. SOURCE Passer montanus (Eurasian tree sparrow) ORGANISM Passer montanus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Passeridae; Passer. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024373034.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Passer montanus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..10289 /organism="Passer montanus" /mol_type="mRNA" /isolate="IOZ18808" /db_xref="taxon:9160" /chromosome="Unknown" /sex="pooled male and female" /tissue_type="blood" gene 1..10289 /gene="AGO2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns" /db_xref="GeneID:120512785" CDS 122..2716 /gene="AGO2" /codon_start=1 /product="protein argonaute-2 isoform X1" /protein_id="XP_039587418.1" /db_xref="GeneID:120512785" /translation="
MYPGAPSAGPVLTPPPPLPPPIQGYAFKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKQVELEVTLPGEGKDRIFKVAIKWMSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQENGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYTGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPSEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA"
misc_feature 407..634 /gene="AGO2" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 662..814 /gene="AGO2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 815..1177 /gene="AGO2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(971..973,1016..1018,1058..1060,1070..1072, 1124..1126,1145..1147,1151..1153) /gene="AGO2" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1310..2587 /gene="AGO2" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1721..1723,1733..1735,1769..1780,1787..1789, 1811..1813,1820..1822,1832..1834,1844..1846) /gene="AGO2" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1925..1927,1931..1933,2141..2143,2555..2557) /gene="AGO2" /note="active site" /db_xref="CDD:240015" ORIGIN
cccctttccttcctcctcctcctccccttcccccgacagcgtagccggggctcgggctcgctccctcccccgtgccctcccctggagccgccgccgcctccgccgccgcacacacggagacatgtacccgggagccccctccgccggacccgtgctcacacctcctcccccattgccaccaccaatccagggatatgcctttaaacctcctcctcgaccagattttggcacttctgggagaacaatcaaactgcaggccaacttctttgaaatggacattcctaaaatagatatctaccattatgaattggatataaagccagaaaaatgtcctagaagagttaacagagaaatagtggagcatatggttcagcactttaaaacccagatttttggggatcgcaaaccagtgtttgatggaagaaaaaacctttatacagccatgccacttcccattgggagagataaacaggtggagctggaggtcacgctgccaggagaaggaaaggacagaatatttaaggtggccatcaagtggatgtcctgtgtgagcttgcaggctttgcatgatgctctctctggccgcctgccgagcgtcccgtttgagaccatccaggccctggatgtggtcatgaggcacttgccttccatgaggtatactcctgttgggagatctttctttacagcatcagaagggtgctcaaatcctttgggtggtggcagagaagtttggtttggcttccatcagtcagtcagaccttcattatggaaaatgatgctaaatattgatgtgtctgcaactgcattttacaaagcacagccagttattgagtttgtctgtgaagttctggacttcaaaagtattgaagaacaacaaaaacctctgacagattcccaaagggtaaagtttaccaaagaaataaaaggtctgaaggtggagataacacactgtggacaaatgaaaaggaagtacagagtgtgcaatgtcaccagacgaccagcaagtcaccaaacattcccacttcagcaggagaatggacaaacagttgaatgcactgtagctcagtattttaaggacaggcataaattagttttacgctaccctcaccttccatgtttacaagttggacaggagcagaaacacacataccttcctctggaggtgtgcaacatagtggcaggacaaagatgcataaagaaactcactgacaatcagacttccactatgattcgagccactgccagatcagccccggaccggcaggaagagatcagcaaattgatgcggagcgccagtttcaacacagacccttacgtccgagagtttgggatcatggtcaaggatgagatgacagacgtgactggtagagtccttcagcctccctcaatcctctatggaggcaggaataaagcaattgctacaccagtgcaaggtgtctgggacatgaggaataaacaatttcacactggaattgaaataaaggtttgggcaattgcctgctttgctccccagcgccagtgcactgaagttcatcttaagtccttcacagaacagctgaggaagatttccagggatgctggaatgccaatccaggggcagccctgcttctgtaaatacgcccagggagccgacagcgtggagcccatgttcagacacctcaagaacacttacactgggctgcagcttgtcgtggtcattctgccaggaaaaacaccagtctatgcggaggtgaagcgtgttggtgacacggtgctgggaatggccactcagtgtgtgcagatgaaaaacgtccaaagaacaacaccacaaactctgtccaacctttgcttaaaaataaatgtcaaattaggaggtgtaaataacattctattgccacagggaagacccccagtattccaacagcctgtcatattccttggtgcagatgtaactcacccaccagctggggatgggaaaaagccttccattgctgcagttgtgggcagcatggatgctcatcccaaccgttactgtgccactgtgcgggtgcagcagcaccgccaggaaatcatccaggacttggctgccatggtcagggagctgctgatccagttctacaaatccaccaggttcaaaccaactcgaatcatcttctacagggatggtgtttctgaggggcagttccagcaggtcctccaccatgagctgctggctatcagggaggcttgcattaaactggagaaggattatcagcctggcatcacatttatagtggtgcagaaaaggcaccacaccagactcttctgcacggataaaaacgaacgggttggaaaaagtggaaacattccagctggtaccacagtggacacaaaaatcacccacccctcagagtttgacttctacctgtgtagtcatgctgggattcagggaacaagcagaccctctcactaccacgtgctgtgggatgacaatcgcttctcgtcggacgagctgcagatcctcacctaccagctgtgccacacctacgtgcgctgcacgcgctccgtctccatccctgccccggcctactacgctcacctggtggccttcagagccaggtaccatctggtggataaagaacacgatagtgctgaaggaagccacacttctggccagagcaatggcagagaccaccaagcacttgctaaggcagtccaggtgcaccaggacacgctgcgcacgatgtactttgcttgacacgttctcatgttcagcggctccggacaaggcagagttggattcacaccagaccagctgcacttagaccaacagatgccccaccccagggacagccagcaatgagtgatgcatctttattcctttctttcctatttgcaaggaagccttccgtccagaatttcagacttgatcacaaactgcattcttgtaccaaaccccactgttgtcggaaatgtggtttgccaaaaatctctgagctgcttggtgtaaaacagacccagtttttataattaaatcaagagctgcaatctcagggcttagggaagaaaaacaaaaaaccaaaccaacaacccaacccacaaaactcctcattcaagtttgctgttcattgagttgcttttgataatttggaaagatctagttaatactaaggtttgatgagctaaaatgctgtgaatcagcttttagtacaaaaaagcaaaacgtcttttgagtatttatgaagccttgattattctagatacatttacaaaatttttattttcaaaataagagcgtgacaaaattctggtttctaattgtcttataaagattattctcagattattctctgtgtgtctaaggacaaatgtattttctgaagcttgtcttgaatgttttttattgtgctgcattttaaaatgtttttcgtagactaaagatgaatctaaaaaaaaaaaaagaaaaagagtaaacctgtatctaagctttcaatagctacagttagattggcagaagaaaatgtgccatttaaaaaaatttgtaaagattttttttaaatcatactgacagctaactttaggatttgtcatacaggactgtgacacttactttccaaagtctctaaagaatacgggtctgtggtgatgaatacagtacaatcctttttcactgttgtttgagttaatgtaaatgttatatatgtttcacagtattaatgtgatagactagatgctattatttatttttatttactaaggagtgctcattatacttctgttaacatatcaagaatgctttgaacttagaaagtaaaatccttttcgtggggacattactcttcaaatgcaaaaacaaaaaaaatatgcagtcgatgtggtgagaggagagagatgcagccagtgtctgttgtagcttgggatttgcagaaaggctttttcaatgtgcacacaacacagcaggttttacctctgcagttcagacgcacacaagaccaacatcctacattcattcaagcacaaaacaattgtattttatttatatgttgagtagtggtgaagcaggagctctgctagaggagagtggctcgctggaagttaggcagaagtcagagaatctatgcagtaaagataaaaattaggaaactgaagtttacttagggagggaggtgaagctctcttcattatgcataagatccgtaggaaatgtgagagttttgccattctcttaggagaagcattaactaaaactgataattatgagacagatgcttctgttagtttgcacactggattcacaaaaaccataacacacatgtaaaccattgcactaatgacaatgccacgagcaggtttaggagaaaatggaaaaagcccaggaaagttgtttatgctgacttgatcttgtttgtttttccatgggataactgaaataagatgctgagaggcaggttggaaaaccttcattctcctccactgatggatttttgttttgtcttttcccttttctccgagcagctgctcagtctctttggacacttttacctctggccactgggatgggcaagtagctttaacccatgcagagctctgggccacagagcaggtcagctgcaaccaggtggtgttgggtaaggtagaaaatgcccaacctttgctgcataaagacttttaggtacataattccagtccagatcttcaccttgtagcagtgtgtcagttgtcagtgttctgtaggtgaaatgtaaaacctgttaatgaaataatcatatttgtactattctgattgggtgattaggctgctggctcagagtatcctcttggtcatagttctataaattcagatttctgtaaatttgaagcagatcctaggtagcattgtctgtcttgctgtgtgccagcgaggttgtacctacctcccctcaagctcccctaagctgcagatcctccccgtggtgggtgtgttgcacttctctgtgtttccttcagagctttcctatttcagtgaagatattcatttggcagagttttatataagaattatttttatatgaattcttcttatcaaataggataaagatcatccattttaagacatcatttaacttatttgctgtctgttatgcagagacctcttggatgtgaaattcatccccctctttccatgcagatctgggacagtggaattgtacaggtggtcagatggggtgaggagggcaggatctgtcttgacctcaaatctcatttctgaagcagcctgtgactgcactgcatcctatttaaaatgtttcctttgtgagaaaaggagttttaggcaggccctgaatctgagagtagctgttgtttgtgcatcctcttggaatgagcagaaataatgtagctttccttccctaagtatgaagaacttgggatgtttatgtgcatttcaggacatttttaccttttacagatctttctaagcttctaatactgctaattctttatgccttgtgatttacagaaagactccacaactggtaaagttgtaaagcaggtctgtatttatttggtgattggcaaattaatttctaaccctcatgtttcacgtgtgtctccctccttttctctcccaccagtggtgaattagtgaataatttaaagcatttaagaaaaaaatactaattaggtatatactttgtaaagtatagcatgctagcagtccagcacctctcttcctgggaatatttttaacataaattacatattcaagaatgtctcctgtccaaaaaaaaaacctgccacaaacacataaaatcctagaattattttttattctgcacctcccacatgtctggtgcagaacagcaacatctcaggtcagcacaaagctcaagaagtctcagtctcccccaggctgctggtggagaagtgtcagctgaggtcacagctctgagtctgggccactgtgcaggtcaggtcagcaataaccaaatttgtgccaccctcaggcacttggggcattttccagcctgtgcaaaggactctcattgcacagccccccccaaaaacagcatcagcaagtgtgaaatgctgctcttgggaggtgcaagtactatcaaaatacacaaaatatttaaaagtttgtctttttttccctgatgtgcaaaatctaatgcaatgatgaggtttgcttggtggtggagatttctgctgcagtggctgaacagagtaaccagtccactccatctgttccagcccccaggaaaaaactgagctgatcctcaggagcaaatgtcctgttgagaaatgctggaaggaggtggatttgtctctgcctttatgtggcatttcagacagccctatgcaatttaacacgtgtgtgtgtatgcactgatgtacagagtgaggtcacttgttttgttagagctcctcattttggcttggcttgctttagaatatttgactttgtgaattacaatcaatgatcttccacgttccagaggctttggcacaggaattcccttgtttcttgatctgtcaggtaacaaatacctttgatctccatccaggcccccaggcagcattccctgatagtaaaagaaaaaaggttgtgaaggtttggctttaattctgcctctctcaataactcctgcagcctttgttgtaacagagtcttgttcttgttggatcatttttataacataagacaagaggtttttccacaaggattttcaaattgaaacttctggagaggaggtgtgaggagtttagggttttttttcctgaaaagattgaagtttctaagatgcttctaagtttttctttctgactaaagttgttcatgcaggtgcccaaaggcttttgattaaatagcatactcagtcaaataagcacctctggtggcataaataacccataagggactttttttttttaatatatatttttctcattaactaaacgaatgtaagaagagttctcagtatttttcacacttgagaccagtgtaattaaactcacttgttttccttctaccatagtatctctctttgtgtggctttccccattcctaatgcagggcagtcttttgttttttacttctatattccatttggtcacatgcttcttgatgcacacatgccatctttcttaaggaaaacttcaagtagaaggtaattgcactgattgttgggttttttaaactccctttttactgtaagattttttttttttgcatctgctgtagctgttggaaaatactgtaaatactgctctgtacagcaagtactgaaatgctggggataccattccttgttctattttccagaatactgccatattttccagtgttgaggtaggagctttgctgttaaatgctgttacactttgtgtgcattatggtatcaatccaagaagggcacagttgctgtattacagtggaaatacttcgggtttgtctgaatttataaaacatttcttccttctctctgtgcacatttctcccagagcacagagatgcagtttttcagctctgtgctcattgtctgtgcaaggttcaaatgccagttttggtatcagtttgatgactgatggcattaatgtaatatttggattatcagatgtagctctcccaggtcttccttgcttgtctgattcttgtgttgtagaagcagaatccgtggatgtggcagaatttagtggaatgacagggatttgggatccacttatgatgtcttgctgtctgtccctgcatggtgtgggattgggcagtgcagaggatgttccagtgctctgagctgcccatagatctcccatccatccatcagcaattgcctttttcctcccagaaccctcggggatgggacagagcccaactccagcccccttggctgatgttaggatgcaaaccagcaagttctgtcttctgtttctgagggttaaagactggaaagatgcatttctgagagggtttaatccagattgtatgggaagggggtgctgcgtgtgcttggtgtggcacagaacctgtttagtcccatttagtgtttcagttgctttgtcagagtctttctttgaagtgttaatttgaatgtaattgcttggccaaatcactacaaaagtgggtttctgggaatctttagttacaaagcaggtgcagttcaaggctacctcctgtattccttcatggaagaattaattgaagtgaacctcccactaagcagccaaaatgctcccagagggactggatttgtgctggtctgttccttactgggaagtggcagtgccatactgtgatcctgggtggctgctcagccttccctctgtcttccagaggcatccctgtgtattgagagggtaccagacctgccaagtggcacatctggcacatctgcttctggtcaggatcactccatagcagcagctccctctgtgacctgtcccttcacttgactttctatactgttgttttccaaatgaaaaatgtttctgtactttacctgttggccagaaaatgtcaggttttctctgcaaatgacatgaaggtgcttgaaatatattttgagtctgaggcaaaaaatatgtattggattatttttttaatgtgttttctaggtaaggtgacatgtgactgtaagaatgaaaatactttattccctgctcagaaaatgataaacttaaaatgtggggaaaaaaaccaaaccaaaacaaaaaacaacccaaacatgagtatgttcatcttgggactgtttagtgtcagttctgtgcaaagccttggccaaaactcaaccttgacatcagtgcacgtggactgagggtactttaagtgacctgaaatgaaactgtagaaaactgtgttaatacatcagattttgtttacacttattccagacaagcttcctcatctcagaacaaaccactctgctgacagaaatacctgttggagcacagtgtgctgatgtggtttcatagcagtgttaaagttgatttttatttacaagcaactgggctttctgctgtggattttggcctgtcagagtgactttcctgagattctgtgctccctgtaatttccttcccttaatctctgggtctagactctgatgaagctcatccatggcaggaggattgcttatgtcctgactttctggagcccagattttgcaagagactgaataaaccattataaaccagctcattaataactgaatgtggtaaaatcctgtcaggttggttcagttctcagtcatgatttaacaaagcccccccaaaagtgtgaagtgcagggtaaatggctcctctgtcattggtgggagcagagttttgtgttttccagacaaggcagacccaggatcatcaggaagtttggggagtgaaggagctccatgctgggtgctgctcatgccccagagaagagaaaccctgggtaccccgagccttggggaaatgagagagaaagcaaggggagacatttccttcaaaattgccagtttaagcacttgttaaggtgacagtttaattcttagttttccttctggcctctctcaagtgccccacagaaatcctccaccctgcacccatctgctggccccatcccagaaggggaaggctggcagggagctccccaagtcgatttgtggtgttgggagctctgacttggttggggctggatcaggggcgctgctggatctggagggaggagaggttggcaggagttcattgtgggagttctgcaagtggcagcactacaaacccacagcaccagatgcaggctgtggctgctccttcttcccacctaaatatcccccaaaaaagcaattccttgggatttgtgtatgcactgcctcagcagatccattgtaaacctgcctgaggctgctcttccaccagccaacctccctgaggagccctgggatgcatggcagttctgtatcaaagggaatacagggaatgcagttctgtatcaaagggaataatcctttccacagggttctcaggagtgcacaggctttagttatatttttcccccacattttggatgtgctgaaccatggactttgttatttgttttcctcccttctttaagcacaactaaaccacttgctggaacagctgctctctgctcatcagcagggattgcagatgctgtctgacctgggagcaagcctaggagttgtccccaaaatataaattttaacttttctagtcattttattggggtttttttgagtgtgcttggcaggcatgaatggtgaacaggtcagcaggcaagcttgggagtctctaatcctctggatgctgctgtttgtgtttgctgtgttaggttagattcctgtcaggacaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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