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2024-03-29 08:01:41, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_039511512            6426 bp    mRNA    linear   VRT 13-FEB-2021
DEFINITION  PREDICTED: Mauremys reevesii argonaute RISC component 4 (AGO4),
            transcript variant X1, mRNA.
ACCESSION   XM_039511512
VERSION     XM_039511512.1
DBLINK      BioProject: PRJNA699301
KEYWORDS    RefSeq.
SOURCE      Mauremys reevesii (Reeves's turtle)
  ORGANISM  Mauremys reevesii
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira;
            Testudinoidea; Geoemydidae; Geoemydinae; Mauremys.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_052645.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Mauremys reevesii Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6426
                     /organism="Mauremys reevesii"
                     /mol_type="mRNA"
                     /isolate="NIE-2019"
                     /db_xref="taxon:260615"
                     /sex="female"
                     /tissue_type="muscle"
                     /country="China: Wuhu"
                     /linkage_group="23"
     gene            1..6426
                     /gene="AGO4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 33 Proteins, and 99% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:120389172"
     CDS             1..2610
                     /gene="AGO4"
                     /codon_start=1
                     /product="protein argonaute-4 isoform X1"
                     /protein_id="XP_039367446.1"
                     /db_xref="GeneID:120389172"
                     /translation="
MIIYYLKLFSLTFTGPPASLFQPPRRPGLGTVGKPIRLLANHFQVQIPKIDVYHYDVDIKPEKRPRRVNREVVDTMVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDMEVTLPGEGKDQTFKVSIQWVSVVSLQLLLEALAGHLNEVPEDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNEMTELTGRVLPAPMLQYGGRNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKLTYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQETSQELLYSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCADKTERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTQHTMYFA"
     misc_feature    100..489
                     /gene="AGO4"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    520..672
                     /gene="AGO4"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    673..1035
                     /gene="AGO4"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(829..831,874..876,916..918,928..930,982..984,
                     1003..1005,1009..1011)
                     /gene="AGO4"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1174..2481
                     /gene="AGO4"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1585..1587,1597..1599,1633..1644,1651..1653,
                     1675..1677,1684..1686,1696..1698,1708..1710)
                     /gene="AGO4"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1789..1791,1795..1797,2035..2037,2449..2451)
                     /gene="AGO4"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
atgatcatttattatctcaaacttttttctttgactttcacagggcccccagccagcctcttccagccgccccgccgccccggcctgggaactgttgggaaacccatccgtctcttagccaatcattttcaggtgcagatccctaaaattgatgtttatcactatgatgtagatatcaaaccagaaaagcggccccgaagagtgaacagggaggtggtagatactatggtgagacacttcaagatgcagatatttggtgatcggcagccaggatatgatggcaaaaggaacatgtacactgcacacccattgcctattgggagagatagggtggatatggaggtgacactcccaggtgaggggaaggaccagacgtttaaagtgtctattcagtgggtgtcagtggtcagccttcagctgcttctggaagctctggcagggcatttaaatgaagttcctgaagactctgtacaggcacttgatgtaatcacacggcaccttccctccatgagatacacccctgtgggccgttccttcttctctcctcctgaaggttactaccaccctctgggaggaggcagagaggtttggtttggattccatcagtcggttcggcctgccatgtggaacatgatgctcaatattgatgtatcggcgactgctttctatcgtgcccagcctatcattgagttcatgtgtgaggtcctggacattcagaacatcaatgaacagaccaagcctcttacagactcccagcgtgttaagtttaccaaagaaatccgaggtctaaaagtagaggttacccactgtggccagatgaagagaaaatacagagtttgcaatgttaccaggcgaccagcgagccatcagacgttccctctgcagctggaaaatggacaggctatggagtgtacagtagctcagtattttaagcaaaagtacagtctgcagctgaagtatcctcaccttccgtgtctccaagtgggacaggaacagaaacacacttatttaccacttgaggtgtgtaacattgtggcaggccaacgatgtatcaagaagctaacagacaatcagacttcaactatgataaaggcaactgcaaggtcggcaccagacaggcaggaagaaatcagcagacttgtgaagagcaacagtatggtaggtggaccggatccgtatctgaaggagtttggcattgtggtccataatgaaatgacagagttaacaggcagagtattgccagcgccgatgctgcagtatggaggccggaacaagactgtagctacaccaaaccagggtgtttgggacatgagagggaaacagttctacgctggcatcgagattaaagtttgggctgttgcctgctttgcacctcaaaaacagtgcagagaagacttgctcaagagtttcacagaccagctgcgcaagatctcaaaggatgcggggatgccaatccaaggccagccatgtttctgtaaatacgcacaaggcgcagacagcgtggagccgatgttcaaacacttgaagttgacctacgttggtctgcagctcatagtagtgatcctgcctggaaagactcctgtgtatgctgaggttaagcgagttggtgacactctcttaggaatggccacgcagtgtgttcaggtgaagaatgtggtaaaaacctcaccccaaactctgtccaatctttgtctgaagataaatgcaaagcttggagggatcaacaatgtgcttgtacctcatcaaaggccctctgtgttccagcaaccagtgatcttcctgggagcagatgtcactcaccctcccgctggggatggaaagaagccatccattgctgctgtggtaggcagtatggatggccaccctagtcgctactgtgctactgtgcgtgtgcagacctcccgtcaggagacttcccaggagttactgtatagtcaggaagtgatccaggacctgactaacatggtacgagagctgctgatccagttctacaaatctactcgcttcaagcccacacggatcatttactacagaggaggagtttcagagggacagatgaaacaggtagcttggccagaattgattgcaatccggaaggcctgtatcagtttggaagaagattatagaccaggaataacctacattgttgtgcagaaaaggcatcacactagactcttctgtgctgacaaaactgaaagggtgggtaaaagtggtaatgtaccagcaggcactaccgtggacagcaccatcacacatccctctgaatttgacttttacctctgtagccatgcaggaattcagggtaccagccgcccatctcactatcaggtcttgtgggatgacaactgtttcaccgcagatgaattgcagctgctaacctaccagctgtgtcacacgtatgtccgctgtacaagatccgtctccattccagctcctgcgtactatgccaggctggtagcatttagggcaagataccatcttgtagacaaggatcatgatagtgctgaaggcagccacgtttcaggacagagcaatggtcgggatccccaggctctggcaaaggcagtgcaaatccaccatgatacccagcatacaatgtattttgcctgagtccatctgggaagacgaggcagaaccggcaacccacgcagtcctgaaatgttttgaacgcctactgcttatagctagggctcagtttatttcagactgcgtactaccagcagctctgaacagtcgcactgaatctacacttcacagcaatgtctgatgcaccaacacaattgagccatttgttttgttgttttaagtaatagaaattcatgaactgtcttttctgatgcattggactgaatttttacctcaaagcgcaaaaggccgatcatcctgaaatttttaaaagacttggcatgaaagatttttattgaatattttgctagctatggtttttaagttatctcctcatcccactagtttatcaagatgagtaattccctttcttcatgcactgcttagtaagtatgcatattatggcaaaccattttactccaattcaatgtaaccattctattgtgtggggccatagattttttttttatggagattttagatttcactactgtaaatgccttttaacaaacattaactttcacaggtattgcagttttttgtcagttttactagttctctttttaatctctgcagacttgggctgcaaagcaattgcactatactgcggattcagctaggtggttcttgttctgtgaatgtgtaacataaccagatagtgatgcctggcagcaggttttaattatgatggttacaaataatactgccatgatatggtaacaagtactgaaccatttccccttctaaaaatgataaaatatttaaaaaaaaattagcttttagatatttttcaaacttttacaaaagtgcccactttatgctgctgtgtggtttgataaatctaggtgattttaaaacttttctcatagaaggtttaactttggcaataaattttttttaagcccccctgacagtgtaaaattctagctgaggattgtgcacgagtttaaccaaccttcttgtgtcgttttctgaacacacagtttggcagtttctgaaactaatcagaaaagatgcacttccatgggtttttttaataattatttttaactgttttatattcactggtgtcctgtctaccactttttttataagcttggaaattgggtgttatatataggaaaggcttgccatctgtacagttctaagtgtgttgtgtgacagtagcgacctgaagactggtaccagcattttaatcttcttttttttccccctggaaatctaggttgctcacacaattgcattcaacagcatgtttaaaaagtgtaaatcaaatatattctgtcccagactagaaattagttgtttttatttgcttggcttttttcagctaaaatgtataaaaaggaagaagggctctgcttcacttaatacttttggaactcacaaacatagtacattgagaatagatttcttttagtgttaacgtgagttaacacagactaaaatcttattccgagattcaacatagctaacattacaccactgcagaagctaagagaagtttgaaaagtcaccagctattgcactgtggtctctgccattggtgtggggtttgctgctaagtattgtgttgttcccgagcttggaaaccagccctctcgaaagctcagcaatatgaaatgctgttttttccttcagtcttctaaataagcttgtacataaaataaagtttacatttttaaatgctgtctttcagttgtacctaagtaagctgaagtttgtcttcaagacagttttataacctactttcagagtagtatgccccattaaaattagtttaaactttttctgttggaaaatgggactgaagcaagctctgctcctggtgtgtagtgtggacaggtttagataagattctttttaatttgttaagctttttttaaagaatacctcacttggataataatcaggacatgtgggtgggagactgactgctgcttcagctagatggctgcttttcttaatacttgttcagggagaatacaaaaaacccttttagaatgaactttgacccaatctatggtgaattttggcaccttgaagagaaattgagcaccctttagcttataggatcaaagatcactgtgggttcatgcactaggcaaaaatgtgactgattagtcaagggtggataagactgagatttaatttttaccaccagatagatagatgtccagtgccaagcactcctagttcagattgaatgaaatgagagcctctcatctgcttgcctgcaattagcctgaatatttaatctcaaactgtacagattattagacctcagctagctctgggaagcatggcaagaactttctaactcaatcttgtgttagaacatcataggactaaaatactggtaagggtgcagtgttgtcactttgagaggtagagagaaccgaagagcattttagatttagaattattgtcattgaagggtgtgtctttcgggaggttataactgcaagatcaaagttgcagcaatattgtatacagttctgaaagctgagtgatgaggtgcagcttgatgatctgaattaccccttgggactgactgaatcgttatgcatgtgtcaatcaatgggaagatgtgcattctgtagctgtagttcttagggtgtttggttttttaataaataaagcctgttggccactgtttagctatgtggtgtggaagattttaaatgtagcaaagtttaatgaattgggggaagggatagttgacagtaaagaagagcagaaaccccacttttgaaccagttctgctttctttgtaaacagttggattctgaacaagctctggaacgaaccagttggcctgtctcagacattcagacaggcccaacttatttattcttactgtaagcactacagtttagtgtagtgcctgtggctgcatccaaagggcataaaaggttgtgacagacaggcaaacatgcttcttaggcctggtctacactagaaaatttggtcagcttcactgcatcactcagggatgtgaaaaatctacacccctgtgggatgtagttaagctgacctgtcaacagcgctaggtggacgccagcatagggagtgtccatacttaagtgctgtagcgtttcaagtgtacaccagcccgcacagtacgtatcttgttccagactaattttagagcttatttacctatatcaaaagtcttgcccttcatatgggcaatggcatcctcttgttcacagagcgtttaacatttccctcccccccccccccaactacctttgtggatgtgctgtaggagttttcttgctcaatagcaaggcagtagctctactttcattttaagaaagcagagtttggagggcattgtatcaatactgtttcaactgcaaggttttttccttgtgaaatttgaggaaagatcttgtaatatcacagattttcttataccttgctattgacattttcatgatatttctatgtctagaggctgaaacttcaatgtaaaatgtttgcatttgttcattttgacttatgatgtaatttttgtttctatattgttagacttgtaatgtttaaaattgtattttattaaattggactggatgtatgtctatagcaatacgaggtactctttctaaactgttatggatgggttagcagccccatgttgcgataagatgctggtcgtgtacaatttgcaatgtattttttttagcctgcagggatattttgtgttcatgtgtccaaaaaaataaaaaattggcattcttgtgccaaatgttttgtttttttccttgttggtgtctaataaaaatgcaatgtaca
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]