2024-03-29 08:01:41, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_039511512 6426 bp mRNA linear VRT 13-FEB-2021 DEFINITION PREDICTED: Mauremys reevesii argonaute RISC component 4 (AGO4), transcript variant X1, mRNA. ACCESSION XM_039511512 VERSION XM_039511512.1 DBLINK BioProject: PRJNA699301 KEYWORDS RefSeq. SOURCE Mauremys reevesii (Reeves's turtle) ORGANISM Mauremys reevesii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052645.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mauremys reevesii Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6426 /organism="Mauremys reevesii" /mol_type="mRNA" /isolate="NIE-2019" /db_xref="taxon:260615" /sex="female" /tissue_type="muscle" /country="China: Wuhu" /linkage_group="23" gene 1..6426 /gene="AGO4" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 33 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns" /db_xref="GeneID:120389172" CDS 1..2610 /gene="AGO4" /codon_start=1 /product="protein argonaute-4 isoform X1" /protein_id="XP_039367446.1" /db_xref="GeneID:120389172" /translation="
MIIYYLKLFSLTFTGPPASLFQPPRRPGLGTVGKPIRLLANHFQVQIPKIDVYHYDVDIKPEKRPRRVNREVVDTMVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDMEVTLPGEGKDQTFKVSIQWVSVVSLQLLLEALAGHLNEVPEDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNEMTELTGRVLPAPMLQYGGRNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKLTYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQETSQELLYSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCADKTERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTQHTMYFA"
misc_feature 100..489 /gene="AGO4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 520..672 /gene="AGO4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 673..1035 /gene="AGO4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(829..831,874..876,916..918,928..930,982..984, 1003..1005,1009..1011) /gene="AGO4" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1174..2481 /gene="AGO4" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1585..1587,1597..1599,1633..1644,1651..1653, 1675..1677,1684..1686,1696..1698,1708..1710) /gene="AGO4" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1789..1791,1795..1797,2035..2037,2449..2451) /gene="AGO4" /note="active site" /db_xref="CDD:240015" ORIGIN
atgatcatttattatctcaaacttttttctttgactttcacagggcccccagccagcctcttccagccgccccgccgccccggcctgggaactgttgggaaacccatccgtctcttagccaatcattttcaggtgcagatccctaaaattgatgtttatcactatgatgtagatatcaaaccagaaaagcggccccgaagagtgaacagggaggtggtagatactatggtgagacacttcaagatgcagatatttggtgatcggcagccaggatatgatggcaaaaggaacatgtacactgcacacccattgcctattgggagagatagggtggatatggaggtgacactcccaggtgaggggaaggaccagacgtttaaagtgtctattcagtgggtgtcagtggtcagccttcagctgcttctggaagctctggcagggcatttaaatgaagttcctgaagactctgtacaggcacttgatgtaatcacacggcaccttccctccatgagatacacccctgtgggccgttccttcttctctcctcctgaaggttactaccaccctctgggaggaggcagagaggtttggtttggattccatcagtcggttcggcctgccatgtggaacatgatgctcaatattgatgtatcggcgactgctttctatcgtgcccagcctatcattgagttcatgtgtgaggtcctggacattcagaacatcaatgaacagaccaagcctcttacagactcccagcgtgttaagtttaccaaagaaatccgaggtctaaaagtagaggttacccactgtggccagatgaagagaaaatacagagtttgcaatgttaccaggcgaccagcgagccatcagacgttccctctgcagctggaaaatggacaggctatggagtgtacagtagctcagtattttaagcaaaagtacagtctgcagctgaagtatcctcaccttccgtgtctccaagtgggacaggaacagaaacacacttatttaccacttgaggtgtgtaacattgtggcaggccaacgatgtatcaagaagctaacagacaatcagacttcaactatgataaaggcaactgcaaggtcggcaccagacaggcaggaagaaatcagcagacttgtgaagagcaacagtatggtaggtggaccggatccgtatctgaaggagtttggcattgtggtccataatgaaatgacagagttaacaggcagagtattgccagcgccgatgctgcagtatggaggccggaacaagactgtagctacaccaaaccagggtgtttgggacatgagagggaaacagttctacgctggcatcgagattaaagtttgggctgttgcctgctttgcacctcaaaaacagtgcagagaagacttgctcaagagtttcacagaccagctgcgcaagatctcaaaggatgcggggatgccaatccaaggccagccatgtttctgtaaatacgcacaaggcgcagacagcgtggagccgatgttcaaacacttgaagttgacctacgttggtctgcagctcatagtagtgatcctgcctggaaagactcctgtgtatgctgaggttaagcgagttggtgacactctcttaggaatggccacgcagtgtgttcaggtgaagaatgtggtaaaaacctcaccccaaactctgtccaatctttgtctgaagataaatgcaaagcttggagggatcaacaatgtgcttgtacctcatcaaaggccctctgtgttccagcaaccagtgatcttcctgggagcagatgtcactcaccctcccgctggggatggaaagaagccatccattgctgctgtggtaggcagtatggatggccaccctagtcgctactgtgctactgtgcgtgtgcagacctcccgtcaggagacttcccaggagttactgtatagtcaggaagtgatccaggacctgactaacatggtacgagagctgctgatccagttctacaaatctactcgcttcaagcccacacggatcatttactacagaggaggagtttcagagggacagatgaaacaggtagcttggccagaattgattgcaatccggaaggcctgtatcagtttggaagaagattatagaccaggaataacctacattgttgtgcagaaaaggcatcacactagactcttctgtgctgacaaaactgaaagggtgggtaaaagtggtaatgtaccagcaggcactaccgtggacagcaccatcacacatccctctgaatttgacttttacctctgtagccatgcaggaattcagggtaccagccgcccatctcactatcaggtcttgtgggatgacaactgtttcaccgcagatgaattgcagctgctaacctaccagctgtgtcacacgtatgtccgctgtacaagatccgtctccattccagctcctgcgtactatgccaggctggtagcatttagggcaagataccatcttgtagacaaggatcatgatagtgctgaaggcagccacgtttcaggacagagcaatggtcgggatccccaggctctggcaaaggcagtgcaaatccaccatgatacccagcatacaatgtattttgcctgagtccatctgggaagacgaggcagaaccggcaacccacgcagtcctgaaatgttttgaacgcctactgcttatagctagggctcagtttatttcagactgcgtactaccagcagctctgaacagtcgcactgaatctacacttcacagcaatgtctgatgcaccaacacaattgagccatttgttttgttgttttaagtaatagaaattcatgaactgtcttttctgatgcattggactgaatttttacctcaaagcgcaaaaggccgatcatcctgaaatttttaaaagacttggcatgaaagatttttattgaatattttgctagctatggtttttaagttatctcctcatcccactagtttatcaagatgagtaattccctttcttcatgcactgcttagtaagtatgcatattatggcaaaccattttactccaattcaatgtaaccattctattgtgtggggccatagattttttttttatggagattttagatttcactactgtaaatgccttttaacaaacattaactttcacaggtattgcagttttttgtcagttttactagttctctttttaatctctgcagacttgggctgcaaagcaattgcactatactgcggattcagctaggtggttcttgttctgtgaatgtgtaacataaccagatagtgatgcctggcagcaggttttaattatgatggttacaaataatactgccatgatatggtaacaagtactgaaccatttccccttctaaaaatgataaaatatttaaaaaaaaattagcttttagatatttttcaaacttttacaaaagtgcccactttatgctgctgtgtggtttgataaatctaggtgattttaaaacttttctcatagaaggtttaactttggcaataaattttttttaagcccccctgacagtgtaaaattctagctgaggattgtgcacgagtttaaccaaccttcttgtgtcgttttctgaacacacagtttggcagtttctgaaactaatcagaaaagatgcacttccatgggtttttttaataattatttttaactgttttatattcactggtgtcctgtctaccactttttttataagcttggaaattgggtgttatatataggaaaggcttgccatctgtacagttctaagtgtgttgtgtgacagtagcgacctgaagactggtaccagcattttaatcttcttttttttccccctggaaatctaggttgctcacacaattgcattcaacagcatgtttaaaaagtgtaaatcaaatatattctgtcccagactagaaattagttgtttttatttgcttggcttttttcagctaaaatgtataaaaaggaagaagggctctgcttcacttaatacttttggaactcacaaacatagtacattgagaatagatttcttttagtgttaacgtgagttaacacagactaaaatcttattccgagattcaacatagctaacattacaccactgcagaagctaagagaagtttgaaaagtcaccagctattgcactgtggtctctgccattggtgtggggtttgctgctaagtattgtgttgttcccgagcttggaaaccagccctctcgaaagctcagcaatatgaaatgctgttttttccttcagtcttctaaataagcttgtacataaaataaagtttacatttttaaatgctgtctttcagttgtacctaagtaagctgaagtttgtcttcaagacagttttataacctactttcagagtagtatgccccattaaaattagtttaaactttttctgttggaaaatgggactgaagcaagctctgctcctggtgtgtagtgtggacaggtttagataagattctttttaatttgttaagctttttttaaagaatacctcacttggataataatcaggacatgtgggtgggagactgactgctgcttcagctagatggctgcttttcttaatacttgttcagggagaatacaaaaaacccttttagaatgaactttgacccaatctatggtgaattttggcaccttgaagagaaattgagcaccctttagcttataggatcaaagatcactgtgggttcatgcactaggcaaaaatgtgactgattagtcaagggtggataagactgagatttaatttttaccaccagatagatagatgtccagtgccaagcactcctagttcagattgaatgaaatgagagcctctcatctgcttgcctgcaattagcctgaatatttaatctcaaactgtacagattattagacctcagctagctctgggaagcatggcaagaactttctaactcaatcttgtgttagaacatcataggactaaaatactggtaagggtgcagtgttgtcactttgagaggtagagagaaccgaagagcattttagatttagaattattgtcattgaagggtgtgtctttcgggaggttataactgcaagatcaaagttgcagcaatattgtatacagttctgaaagctgagtgatgaggtgcagcttgatgatctgaattaccccttgggactgactgaatcgttatgcatgtgtcaatcaatgggaagatgtgcattctgtagctgtagttcttagggtgtttggttttttaataaataaagcctgttggccactgtttagctatgtggtgtggaagattttaaatgtagcaaagtttaatgaattgggggaagggatagttgacagtaaagaagagcagaaaccccacttttgaaccagttctgctttctttgtaaacagttggattctgaacaagctctggaacgaaccagttggcctgtctcagacattcagacaggcccaacttatttattcttactgtaagcactacagtttagtgtagtgcctgtggctgcatccaaagggcataaaaggttgtgacagacaggcaaacatgcttcttaggcctggtctacactagaaaatttggtcagcttcactgcatcactcagggatgtgaaaaatctacacccctgtgggatgtagttaagctgacctgtcaacagcgctaggtggacgccagcatagggagtgtccatacttaagtgctgtagcgtttcaagtgtacaccagcccgcacagtacgtatcttgttccagactaattttagagcttatttacctatatcaaaagtcttgcccttcatatgggcaatggcatcctcttgttcacagagcgtttaacatttccctcccccccccccccaactacctttgtggatgtgctgtaggagttttcttgctcaatagcaaggcagtagctctactttcattttaagaaagcagagtttggagggcattgtatcaatactgtttcaactgcaaggttttttccttgtgaaatttgaggaaagatcttgtaatatcacagattttcttataccttgctattgacattttcatgatatttctatgtctagaggctgaaacttcaatgtaaaatgtttgcatttgttcattttgacttatgatgtaatttttgtttctatattgttagacttgtaatgtttaaaattgtattttattaaattggactggatgtatgtctatagcaatacgaggtactctttctaaactgttatggatgggttagcagccccatgttgcgataagatgctggtcgtgtacaatttgcaatgtattttttttagcctgcagggatattttgtgttcatgtgtccaaaaaaataaaaaattggcattcttgtgccaaatgttttgtttttttccttgttggtgtctaataaaaatgcaatgtaca
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@meso_cacase at
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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