2024-05-17 12:58:42, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_039173303 4474 bp mRNA linear PLN 27-JAN-2021 DEFINITION PREDICTED: Hibiscus syriacus disease resistance protein TAO1-like (LOC120163333), mRNA. ACCESSION XM_039173303 VERSION XM_039173303.1 DBLINK BioProject: PRJNA691360 KEYWORDS RefSeq. SOURCE Hibiscus syriacus ORGANISM Hibiscus syriacus Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Hibiscus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024063094.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Hibiscus syriacus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4474 /organism="Hibiscus syriacus" /mol_type="mRNA" /cultivar="Baekdansim" /isolate="YM2019G1" /db_xref="taxon:106335" /chromosome="Unknown" /tissue_type="leaf" /country="South Korea" gene 1..4474 /gene="LOC120163333" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:120163333" CDS 106..4263 /gene="LOC120163333" /codon_start=1 /product="disease resistance protein TAO1-like" /protein_id="XP_039029234.1" /db_xref="GeneID:120163333" /translation="
MASSSSSSSSSSCHLMYQVFLSFRGEDKRLNFTSHLLKTLKDTGMNVFFDEDKLEKGEQLSQALSQAIASSNLSIVVLSVDYASSKSCLAELCDIMGRKGTQQHTVLPIFYHVDPSHVRNIGGSFKASFEEHESNRPLDEVNRWRDAFVEIGKLKGWHIQGGKLDRSEAEYIEDVVEYAIKELNSKSKSVTTELVGIDDQKKKILQLIEEEDSRIIGLWGMSGIGKTTLAEGVYNEISPKFQCRCFLQDVREKIKKQGKESLRNELLSELLNSKTCVDTPSIRSVLTQQRLNNIKVIVVLDDVGDSEQIDLMGVKHFGDGSKIIITSRNRQVLTNGGANKIHKVIKLNEDDSLQLFSTFAFKSLNPAPDFRDLSNNFLRYAQGSPLALKVLGSKLHKKSRKEWESEVDKLKEYAKTKISQILMSSFDELDEQEKNIFLDIACLLKGESKKEVEEILSCLYEGAMCGISDLLDKCLIEVDSNGVICMHDMLEEMGKYIVRRESKDPGERSRLWSLKDMIQVLKYNKVNKSIEGIKLFVSRLEDQLLLYSSFEKMHNLRYIILYTCSFSVTSVSFSDELRYLHWDFCPLKCLSSNFNPKNLVVLKLRESFIEQLWKEDHQDLVNLKSIDLSGCKSLRKIPNLSGAINLQSLCCNGCANLVELLSLDQLVSLESLDLAGCKSLGKIPNLSGATKLQSLCCNGCANLVELLSLDQLVSLECLDLSGYKSLVKIPNLSRAINLQSLCCNGCANLVELLSLDQFVSIECLDLSGCKSLVKIPNLSGAIKLQSLCCNGCESLVELPSLNQFVSLEILDLSGCKSLGKIPNLSGAIKLQSLCCNGCANLVELLSLNQLVALESIDLAGCKSLGKIPNLSGAINLQSLCCNGCANLVELLSLDQLVSLERLDLSGCKSLRKIPNLSGAIKLQSLCCNECANLIELLSLNQLVSLESLDLSGCKSLGKIPNLSGAIKLQSLCCNGCESLVELPSLDQLVSLESLDLSGCKSLGKIPNLSGAIKLQSLCCNGCANLVELLSFNQLVSLKSVDLAGCKSLGKIPNLSGATKLQSLCCNGCANLVELPSLNQLVSLECLDFSGCKSLRKIPNLSGAIKLQSLYCNGCESLVELPSLDQLVSLESLDLSGCKSLGKIPNLSGAIKLQSLCCNGCANLVELLSLDQLVSLESLDLSGCKSLVKIPNLSGVIKLQSLCCNGCESLVELPSLNQLVSLESLDLSGCKSLGKISNLSGAIKLQSLCCNGCANLVELLSLNQLESLESLDLSGCKSLMKIPNLSGAIKLQSIWCNGCESLVELSFLNQLVSLESLDLSGCKSLGKILNLSGAIKLQSLCCNGCENLVELFSLNQLVYLESLDLSGCKSLVKIPNLSGAIKLQWV"
misc_feature 142..>2841 /gene="LOC120163333" /note="Resistant to P. syringae 6; Provisional; Region: PLN03210" /db_xref="CDD:215633" misc_feature 2455..2520 /gene="LOC120163333" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275381" misc_feature 2524..2592 /gene="LOC120163333" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 2593..2763 /gene="LOC120163333" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 2662..2718 /gene="LOC120163333" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275381" misc_feature 2800..2868 /gene="LOC120163333" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 2938..3006 /gene="LOC120163333" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 3007..3075 /gene="LOC120163333" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 3076..3177 /gene="LOC120163333" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 3178..3246 /gene="LOC120163333" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature <3205..>3945 /gene="LOC120163333" /note="Resistant to P. syringae 6; Provisional; Region: PLN03210" /db_xref="CDD:215633" misc_feature 3247..3384 /gene="LOC120163333" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 3385..3489 /gene="LOC120163333" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 3490..3627 /gene="LOC120163333" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 3628..3696 /gene="LOC120163333" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 3766..3867 /gene="LOC120163333" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 3868..3936 /gene="LOC120163333" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 3937..4041 /gene="LOC120163333" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature <4033..>4254 /gene="LOC120163333" /note="Resistant to P. syringae 6; Provisional; Region: PLN03210" /db_xref="CDD:215633" misc_feature 4111..4179 /gene="LOC120163333" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275381" ORIGIN
tgtgaaaaggaatttaaagtccttttattcgcatcatcatttcttcctctcttgctatctcttgtctctgtctattaatcgcagtatccattctctttcctattcatggcttcttcttcttcttcttcttcttcttcttcttgtcatttgatgtatcaagttttcttgagcttcagaggtgaagacaagcgccttaacttcaccagccatctcctcaaaactctgaaagacactggcatgaacgtcttcttcgatgaagataagctggagaaaggggagcagctttcacaggcactgtcccaagcaatagcatcctcaaatctctcaatagtcgtcttgtctgtcgactatgcttcttccaaatcatgcttagccgaactctgtgacatcatgggtcgcaagggaactcaacaacatactgttcttcccatcttttaccatgttgatccttctcatgtccgaaacattggtggaagttttaaggcatcctttgaagagcatgaatcgaataggccacttgatgaagtgaatcgatggagagatgccttcgttgaaatcggcaaattaaaagggtggcatatacaaggcggcaaactcgatagatctgaggctgaatacatcgaagatgtcgttgagtatgccataaaagaattgaatagtaagtctaaaagtgttactacagaattagttggaatagatgatcagaaaaaaaagatcttgcagctaatcgaggaagaagatagtcgaataataggactttggggaatgagtggtattggcaagactacccttgctgaaggtgtctataatgaaatctctccaaagtttcaatgtcgttgcttccttcaagatgttagagagaaaataaaaaaacaggggaaggaatctttacgaaatgaacttctttccgaactattgaactcgaaaacatgtgtagacaccccctccataagatccgtcttaacccaacagaggctcaataatataaaagtaatcgtcgtccttgatgatgttggtgactcagagcagatagatcttatgggtgtaaaacattttggtgatggaagtaaaattatcataacatccagaaataggcaagtacttacgaatggaggagctaacaaaatacataaggtgattaagttaaacgaggatgactctcttcaactcttttctacatttgcatttaagtcgttgaatcctgctcctgattttcgagatctatcgaataattttttgcggtacgcccaaggcagtccacttgctcttaaagttttgggttctaaacttcataaaaagtctagaaaagagtgggaaagtgaggtggacaagctcaaggaatatgcaaaaacaaagatttcacagattttgatgagtagttttgacgagttggatgaacaagagaagaatatatttcttgatatagcatgcctcttgaaaggggaatccaagaaagaagtagaagaaattctaagttgcttatatgagggtgcaatgtgtggaataagcgatttgcttgataagtgtctaattgaagtggattccaatggggtgatttgtatgcatgatatgcttgaagagatgggaaaatacattgttcgccgagaatctaaagatcctggagagcgcagtaggttatggagtcttaaagacatgatccaagtgctcaaatataataaagtgaataaatcaattgaaggaataaagcttttcgtgagtcgacttgaagaccagctgttactatattctagttttgagaagatgcataatcttagatatatcatcctttatacatgttcgttctctgttaccagtgtatctttttctgatgagctaaggtatcttcattgggacttttgtcccttgaaatgcttatcatcaaattttaacccaaagaatcttgttgtgttgaaactaagagagagcttcatagaacaactttggaaggaagatcatcaggatcttgttaatttaaagtcaattgacctttctggttgcaagagtctgaggaagatccctaatctatcaggagccatcaaccttcaaagcctttgctgcaatgggtgcgcaaatttggttgaactactttcccttgaccagttggtatctcttgaaagccttgaccttgctggttgcaagagtctggggaagatccctaatctatcaggagccaccaagcttcaaagcctttgctgcaatgggtgtgcaaatttggttgaactactttccctcgaccagttggtatctctcgaatgccttgacctttctggttacaagagtctggtgaagatccctaatctatcaagagccatcaaccttcaaagcctttgctgcaatgggtgtgcaaatttggttgaactactttccctcgaccaatttgtatctattgaatgccttgacctttctggttgcaagagtctggtgaagatccctaatttatcaggagccatcaagcttcaaagcctttgctgcaatgggtgtgaaagtttggttgaactaccttccctcaaccagtttgtatctcttgaaatccttgacctttcgggttgcaagagtttggggaagatccctaatctatcaggagccatcaagcttcaaagcctttgctgcaatgggtgtgcaaatttggttgaactactttccctcaaccagttggtagctcttgaaagcattgaccttgctggttgcaagagtctggggaagatccctaatctatcaggagccatcaaccttcaaagcctttgctgcaatgggtgcgcaaatttggttgaactactttccctcgaccagttggtatctcttgaaagacttgacctttctggttgcaagagtctgaggaagatccctaatctatcaggagccattaagcttcaaagcctttgctgcaatgagtgtgcaaatttgattgaactactttccctcaaccagttggtatctctcgaaagccttgacctttctggttgcaagagtctggggaagatccctaatctatcaggagccatcaagcttcaaagcctttgctgcaatgggtgtgaaagtttggttgaattaccttccctcgaccagttggtatctcttgaaagccttgacctttctggttgcaagagtctggggaagattcctaatctatcaggagctatcaagctacaaagcctttgctgcaatgggtgtgcaaatttggttgaactactttccttcaaccagttggtatctcttaaaagcgttgaccttgctggttgtaagagtctggggaagatccctaatctatcaggagccaccaagcttcaaagcctttgctgcaatgggtgtgcaaatttggttgaactaccttccctcaaccagttggtatctctcgagtgccttgacttttctggttgcaagagtctgaggaagatccctaatctatcaggagccatcaagcttcaaagcctttactgcaatgggtgtgaaagtttggttgaactaccttccctcgatcagttggtatctcttgaaagccttgacctttcgggttgcaagagtttggggaagatccctaatctatcaggagccatcaagcttcaaagcctttgttgcaatgggtgtgcaaatttggttgaactactttccctcgaccagttggtatctcttgaaagccttgacctttctggttgcaagagtctggtgaagatccctaatctatcgggagtcatcaagcttcaaagcctttgctgcaatgggtgtgaaagtttggttgaactaccctccctcaaccaattggtatctcttgaaagccttgacctttctggttgcaagagtttggggaagatttctaatctatcaggagccatcaagcttcaaagcctttgctgcaatgggtgtgcaaatttggttgaactactttccctcaaccagttggaatctcttgaaagccttgacctttctggttgcaagagtctgatgaagatccctaatctatcaggagccatcaagcttcaaagcatttggtgcaatgggtgtgaaagtttggttgaactatctttcctcaaccagttggtatctcttgaaagccttgacctttctggttgcaagagtctggggaagatccttaatctatcaggagccatcaaacttcaaagcctttgctgcaatggttgtgaaaatttggttgaactattttccctcaaccagttggtatatcttgaaagccttgacctttctggttgcaagagtttggtgaagatccctaatctatcaggagccatcaagctgcaatgggtgtgaaattttggttgaactaccttccctcaaccagttggtatctcttgaaagccttgacctttctggttgcaagagtctggggaaaatccctaatctatcaggagccattaacctttaatcacttaagtgatattactgtataagtttggttgaactaccttggctcaaccatttggcatatcttaaagagcttaggctagaggaatgtcataat
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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