GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-05-17 12:58:42, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_039173303            4474 bp    mRNA    linear   PLN 27-JAN-2021
DEFINITION  PREDICTED: Hibiscus syriacus disease resistance protein TAO1-like
            (LOC120163333), mRNA.
ACCESSION   XM_039173303
VERSION     XM_039173303.1
DBLINK      BioProject: PRJNA691360
KEYWORDS    RefSeq.
SOURCE      Hibiscus syriacus
  ORGANISM  Hibiscus syriacus
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae;
            Hibiscus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_024063094.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Hibiscus syriacus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4474
                     /organism="Hibiscus syriacus"
                     /mol_type="mRNA"
                     /cultivar="Baekdansim"
                     /isolate="YM2019G1"
                     /db_xref="taxon:106335"
                     /chromosome="Unknown"
                     /tissue_type="leaf"
                     /country="South Korea"
     gene            1..4474
                     /gene="LOC120163333"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:120163333"
     CDS             106..4263
                     /gene="LOC120163333"
                     /codon_start=1
                     /product="disease resistance protein TAO1-like"
                     /protein_id="XP_039029234.1"
                     /db_xref="GeneID:120163333"
                     /translation="
MASSSSSSSSSSCHLMYQVFLSFRGEDKRLNFTSHLLKTLKDTGMNVFFDEDKLEKGEQLSQALSQAIASSNLSIVVLSVDYASSKSCLAELCDIMGRKGTQQHTVLPIFYHVDPSHVRNIGGSFKASFEEHESNRPLDEVNRWRDAFVEIGKLKGWHIQGGKLDRSEAEYIEDVVEYAIKELNSKSKSVTTELVGIDDQKKKILQLIEEEDSRIIGLWGMSGIGKTTLAEGVYNEISPKFQCRCFLQDVREKIKKQGKESLRNELLSELLNSKTCVDTPSIRSVLTQQRLNNIKVIVVLDDVGDSEQIDLMGVKHFGDGSKIIITSRNRQVLTNGGANKIHKVIKLNEDDSLQLFSTFAFKSLNPAPDFRDLSNNFLRYAQGSPLALKVLGSKLHKKSRKEWESEVDKLKEYAKTKISQILMSSFDELDEQEKNIFLDIACLLKGESKKEVEEILSCLYEGAMCGISDLLDKCLIEVDSNGVICMHDMLEEMGKYIVRRESKDPGERSRLWSLKDMIQVLKYNKVNKSIEGIKLFVSRLEDQLLLYSSFEKMHNLRYIILYTCSFSVTSVSFSDELRYLHWDFCPLKCLSSNFNPKNLVVLKLRESFIEQLWKEDHQDLVNLKSIDLSGCKSLRKIPNLSGAINLQSLCCNGCANLVELLSLDQLVSLESLDLAGCKSLGKIPNLSGATKLQSLCCNGCANLVELLSLDQLVSLECLDLSGYKSLVKIPNLSRAINLQSLCCNGCANLVELLSLDQFVSIECLDLSGCKSLVKIPNLSGAIKLQSLCCNGCESLVELPSLNQFVSLEILDLSGCKSLGKIPNLSGAIKLQSLCCNGCANLVELLSLNQLVALESIDLAGCKSLGKIPNLSGAINLQSLCCNGCANLVELLSLDQLVSLERLDLSGCKSLRKIPNLSGAIKLQSLCCNECANLIELLSLNQLVSLESLDLSGCKSLGKIPNLSGAIKLQSLCCNGCESLVELPSLDQLVSLESLDLSGCKSLGKIPNLSGAIKLQSLCCNGCANLVELLSFNQLVSLKSVDLAGCKSLGKIPNLSGATKLQSLCCNGCANLVELPSLNQLVSLECLDFSGCKSLRKIPNLSGAIKLQSLYCNGCESLVELPSLDQLVSLESLDLSGCKSLGKIPNLSGAIKLQSLCCNGCANLVELLSLDQLVSLESLDLSGCKSLVKIPNLSGVIKLQSLCCNGCESLVELPSLNQLVSLESLDLSGCKSLGKISNLSGAIKLQSLCCNGCANLVELLSLNQLESLESLDLSGCKSLMKIPNLSGAIKLQSIWCNGCESLVELSFLNQLVSLESLDLSGCKSLGKILNLSGAIKLQSLCCNGCENLVELFSLNQLVYLESLDLSGCKSLVKIPNLSGAIKLQWV"
     misc_feature    142..>2841
                     /gene="LOC120163333"
                     /note="Resistant to P. syringae 6; Provisional; Region:
                     PLN03210"
                     /db_xref="CDD:215633"
     misc_feature    2455..2520
                     /gene="LOC120163333"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275381"
     misc_feature    2524..2592
                     /gene="LOC120163333"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2593..2763
                     /gene="LOC120163333"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2662..2718
                     /gene="LOC120163333"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275381"
     misc_feature    2800..2868
                     /gene="LOC120163333"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    2938..3006
                     /gene="LOC120163333"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    3007..3075
                     /gene="LOC120163333"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    3076..3177
                     /gene="LOC120163333"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    3178..3246
                     /gene="LOC120163333"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    <3205..>3945
                     /gene="LOC120163333"
                     /note="Resistant to P. syringae 6; Provisional; Region:
                     PLN03210"
                     /db_xref="CDD:215633"
     misc_feature    3247..3384
                     /gene="LOC120163333"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    3385..3489
                     /gene="LOC120163333"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    3490..3627
                     /gene="LOC120163333"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    3628..3696
                     /gene="LOC120163333"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    3766..3867
                     /gene="LOC120163333"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    3868..3936
                     /gene="LOC120163333"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    3937..4041
                     /gene="LOC120163333"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    <4033..>4254
                     /gene="LOC120163333"
                     /note="Resistant to P. syringae 6; Provisional; Region:
                     PLN03210"
                     /db_xref="CDD:215633"
     misc_feature    4111..4179
                     /gene="LOC120163333"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275381"
ORIGIN      
tgtgaaaaggaatttaaagtccttttattcgcatcatcatttcttcctctcttgctatctcttgtctctgtctattaatcgcagtatccattctctttcctattcatggcttcttcttcttcttcttcttcttcttcttcttgtcatttgatgtatcaagttttcttgagcttcagaggtgaagacaagcgccttaacttcaccagccatctcctcaaaactctgaaagacactggcatgaacgtcttcttcgatgaagataagctggagaaaggggagcagctttcacaggcactgtcccaagcaatagcatcctcaaatctctcaatagtcgtcttgtctgtcgactatgcttcttccaaatcatgcttagccgaactctgtgacatcatgggtcgcaagggaactcaacaacatactgttcttcccatcttttaccatgttgatccttctcatgtccgaaacattggtggaagttttaaggcatcctttgaagagcatgaatcgaataggccacttgatgaagtgaatcgatggagagatgccttcgttgaaatcggcaaattaaaagggtggcatatacaaggcggcaaactcgatagatctgaggctgaatacatcgaagatgtcgttgagtatgccataaaagaattgaatagtaagtctaaaagtgttactacagaattagttggaatagatgatcagaaaaaaaagatcttgcagctaatcgaggaagaagatagtcgaataataggactttggggaatgagtggtattggcaagactacccttgctgaaggtgtctataatgaaatctctccaaagtttcaatgtcgttgcttccttcaagatgttagagagaaaataaaaaaacaggggaaggaatctttacgaaatgaacttctttccgaactattgaactcgaaaacatgtgtagacaccccctccataagatccgtcttaacccaacagaggctcaataatataaaagtaatcgtcgtccttgatgatgttggtgactcagagcagatagatcttatgggtgtaaaacattttggtgatggaagtaaaattatcataacatccagaaataggcaagtacttacgaatggaggagctaacaaaatacataaggtgattaagttaaacgaggatgactctcttcaactcttttctacatttgcatttaagtcgttgaatcctgctcctgattttcgagatctatcgaataattttttgcggtacgcccaaggcagtccacttgctcttaaagttttgggttctaaacttcataaaaagtctagaaaagagtgggaaagtgaggtggacaagctcaaggaatatgcaaaaacaaagatttcacagattttgatgagtagttttgacgagttggatgaacaagagaagaatatatttcttgatatagcatgcctcttgaaaggggaatccaagaaagaagtagaagaaattctaagttgcttatatgagggtgcaatgtgtggaataagcgatttgcttgataagtgtctaattgaagtggattccaatggggtgatttgtatgcatgatatgcttgaagagatgggaaaatacattgttcgccgagaatctaaagatcctggagagcgcagtaggttatggagtcttaaagacatgatccaagtgctcaaatataataaagtgaataaatcaattgaaggaataaagcttttcgtgagtcgacttgaagaccagctgttactatattctagttttgagaagatgcataatcttagatatatcatcctttatacatgttcgttctctgttaccagtgtatctttttctgatgagctaaggtatcttcattgggacttttgtcccttgaaatgcttatcatcaaattttaacccaaagaatcttgttgtgttgaaactaagagagagcttcatagaacaactttggaaggaagatcatcaggatcttgttaatttaaagtcaattgacctttctggttgcaagagtctgaggaagatccctaatctatcaggagccatcaaccttcaaagcctttgctgcaatgggtgcgcaaatttggttgaactactttcccttgaccagttggtatctcttgaaagccttgaccttgctggttgcaagagtctggggaagatccctaatctatcaggagccaccaagcttcaaagcctttgctgcaatgggtgtgcaaatttggttgaactactttccctcgaccagttggtatctctcgaatgccttgacctttctggttacaagagtctggtgaagatccctaatctatcaagagccatcaaccttcaaagcctttgctgcaatgggtgtgcaaatttggttgaactactttccctcgaccaatttgtatctattgaatgccttgacctttctggttgcaagagtctggtgaagatccctaatttatcaggagccatcaagcttcaaagcctttgctgcaatgggtgtgaaagtttggttgaactaccttccctcaaccagtttgtatctcttgaaatccttgacctttcgggttgcaagagtttggggaagatccctaatctatcaggagccatcaagcttcaaagcctttgctgcaatgggtgtgcaaatttggttgaactactttccctcaaccagttggtagctcttgaaagcattgaccttgctggttgcaagagtctggggaagatccctaatctatcaggagccatcaaccttcaaagcctttgctgcaatgggtgcgcaaatttggttgaactactttccctcgaccagttggtatctcttgaaagacttgacctttctggttgcaagagtctgaggaagatccctaatctatcaggagccattaagcttcaaagcctttgctgcaatgagtgtgcaaatttgattgaactactttccctcaaccagttggtatctctcgaaagccttgacctttctggttgcaagagtctggggaagatccctaatctatcaggagccatcaagcttcaaagcctttgctgcaatgggtgtgaaagtttggttgaattaccttccctcgaccagttggtatctcttgaaagccttgacctttctggttgcaagagtctggggaagattcctaatctatcaggagctatcaagctacaaagcctttgctgcaatgggtgtgcaaatttggttgaactactttccttcaaccagttggtatctcttaaaagcgttgaccttgctggttgtaagagtctggggaagatccctaatctatcaggagccaccaagcttcaaagcctttgctgcaatgggtgtgcaaatttggttgaactaccttccctcaaccagttggtatctctcgagtgccttgacttttctggttgcaagagtctgaggaagatccctaatctatcaggagccatcaagcttcaaagcctttactgcaatgggtgtgaaagtttggttgaactaccttccctcgatcagttggtatctcttgaaagccttgacctttcgggttgcaagagtttggggaagatccctaatctatcaggagccatcaagcttcaaagcctttgttgcaatgggtgtgcaaatttggttgaactactttccctcgaccagttggtatctcttgaaagccttgacctttctggttgcaagagtctggtgaagatccctaatctatcgggagtcatcaagcttcaaagcctttgctgcaatgggtgtgaaagtttggttgaactaccctccctcaaccaattggtatctcttgaaagccttgacctttctggttgcaagagtttggggaagatttctaatctatcaggagccatcaagcttcaaagcctttgctgcaatgggtgtgcaaatttggttgaactactttccctcaaccagttggaatctcttgaaagccttgacctttctggttgcaagagtctgatgaagatccctaatctatcaggagccatcaagcttcaaagcatttggtgcaatgggtgtgaaagtttggttgaactatctttcctcaaccagttggtatctcttgaaagccttgacctttctggttgcaagagtctggggaagatccttaatctatcaggagccatcaaacttcaaagcctttgctgcaatggttgtgaaaatttggttgaactattttccctcaaccagttggtatatcttgaaagccttgacctttctggttgcaagagtttggtgaagatccctaatctatcaggagccatcaagctgcaatgggtgtgaaattttggttgaactaccttccctcaaccagttggtatctcttgaaagccttgacctttctggttgcaagagtctggggaaaatccctaatctatcaggagccattaacctttaatcacttaagtgatattactgtataagtttggttgaactaccttggctcaaccatttggcatatcttaaagagcttaggctagaggaatgtcataat
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]