LOCUS       XM_039089706            3309 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus SREBF pathway regulator in golgi 1
            (Spring1), transcript variant X1, mRNA.
ACCESSION   XM_039089706
VERSION     XM_039089706.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3309
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /country="USA: Wisconsin, Milwaukee, Medical College of
                     Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3309
                     /gene="Spring1"
                     /gene_synonym="RGD1562310"
                     /note="SREBF pathway regulator in golgi 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 3 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:498188"
                     /db_xref="RGD:1562310"
     CDS             136..1959
                     /gene="Spring1"
                     /gene_synonym="RGD1562310"
                     /codon_start=1
                     /product="SREBP regulating gene protein isoform X1"
                     /protein_id="XP_038945634.1"
                     /db_xref="GeneID:498188"
                     /db_xref="RGD:1562310"
                     /translation="

MLNLAALLWRRLLRKRWVLALVFGLSLVYFLSSTFKQEERAIRDRNLLQVQDREQPIPWKVQFNLGNSSRPSNQCRNSVQGKHLITDELGDIGVHGVIMCLTQMVASAGDIGVHGVIMCLTQMVASAGDIGVHGVIMCLTQMVASAGDIGVHGVIMCLTQMVASAGDIGVHGVIMCLTQMVASAGDIGVHGVIMCLTQMVASAGDIGVHGVIMCLTQMVASAGDIGVHGVIMCLTQMVASAGDIGVHGVIMCLTQMVASAGDIGVHGVIMCLTQMVASAGDIGVHGVIMCLTQMVASAGDIGVHGVIMCLTQMVASAGDIGVHGVIMCLTQMVASAGDIGVHGVIMCLTQMVASAGDIGVHGVIMCLTQMVASAGDIGVHGVIMCLTQMVASAGDIGVHGVIMCLTQMVASAGDIGMHGVIMCLTQMVASAGDIGVHGVIMCLTQMVASAGDIGVHGVIMCLTQMVASAGDIGVHGVIMCLTQMVASAGDIGVHGVIMCLTQMVASAGDIGVHGVIMCLTQMVASAGDIGVHGVIMCLTQMVASAGDIGVHGVVMCLTQMVASAGDIGVHGVIMCLTQMVASAGDIGVHGVIMCLTQMESQCCYHPG"

     misc_feature    349..>405
                     /gene="Spring1"
                     /gene_synonym="RGD1562310"
                     /note="Uncharacterized conserved protein (DUF2054);
                     Region: DUF2054; pfam10218"
                     /db_xref="CDD:431145"
     misc_feature    <442..978
                     /gene="Spring1"
                     /gene_synonym="RGD1562310"
                     /note="N-terminal domain of Kruppel-like factor 18;
                     Region: KLF18_N; cd21575"
                     /db_xref="CDD:410566"
     misc_feature    727..1491
                     /gene="Spring1"
                     /gene_synonym="RGD1562310"
                     /note="N-terminal domain of Kruppel-like factor 18;
                     Region: KLF18_N; cd21575"
                     /db_xref="CDD:410566"
     misc_feature    1240..1890
                     /gene="Spring1"
                     /gene_synonym="RGD1562310"
                     /note="N-terminal domain of Kruppel-like factor 18;
                     Region: KLF18_N; cd21575"
                     /db_xref="CDD:410566"
ORIGIN      

gtggtgtcactggacagggtggggcgtgcgacggatcacgtggccggcgcgcttgctgcgggaaggtaaaagcagtgctgggagcgtactaggggtcatgccgcggggtcgtctctgcgcctgcgccctgccgggatgctgaaccttgcggcgctgctgtggcgccggctcctgcgcaagcgctgggtgctcgccctggttttcgggctctcgctggtttacttccttagcagtaccttcaagcaggaagagagggccataagagaccggaacctcctccaggttcaagaccgggaacagcccatcccttggaaggtgcagtttaacctaggcaacagcagccgacctagtaaccagtgccggaactccgttcaagggaaacacctcatcaccgacgagctgggtgacattggggtgcacggtgttatcatgtgcttgacccagatggtggcgtccgcaggtgacattggggtgcacggtgttatcatgtgcttgacccagatggtggcgtccgcaggtgacattggggtgcacggtgttatcatgtgcttgacccagatggtggcatctgcaggtgacattggggtgcacggtgttatcatgtgcttgacccagatggtggcatctgcaggtgacattggggtgcacggtgttatcatgtgtttgacccagatggtggcgtccgcaggtgacattggggtgcacggtgttatcatgtgcttgacccagatggtggcgtccgcaggtgacattggggtgcacggtgttatcatgtgcttgacccagatggtggcgtccgcaggtgacattggggtgcacggtgttatcatgtgcttgacccagatggtggcatctgcaggtgacattggggtgcacggtgttatcatgtgcttgacccagatggtggcgtccgcaggtgacattggggtgcacggtgttatcatgtgcttgacccagatggtggcgtccgcaggtgacattggggtgcacggtgttatcatgtgcttgacccagatggtggcatctgcaggtgacattggggtgcacggtgttatcatgtgcttgacccagatggtggcatctgcaggtgacattggggtgcacggtgttatcatgtgcttgacccagatggtggcatctgcaggtgacattggggtgcacggtgttatcatgtgcttgacccagatggtggcgtccgcaggtgacattggggtgcacggtgttatcatgtgcttgacccagatggtggcgtccgcaggtgacattggggtgcacggtgttatcatgtgcttgacccagatggtggcatctgcaggtgacattggggtgcacggtgttatcatgtgcttgacccagatggtggcatctgcaggtgacattgggatgcacggtgttatcatgtgcttgacccagatggtggcgtccgcaggtgacattggggtgcacggtgttatcatgtgcttgacccagatggtggcatctgcaggtgacattggggtgcacggtgttatcatgtgcttgacccagatggtggcatctgcaggtgacattggggtgcacggtgttatcatgtgcttgacccagatggtggcgtctgcaggtgacattggggtgcacggtgttatcatgtgcttgacccagatggtggcatctgcaggtgacattggggtgcacggtgttatcatgtgcttgacccagatggtggcatctgcaggtgacattggggtgcacggtgttatcatgtgcttgacccagatggtggcgtccgcaggtgacattggggtgcacggtgttgtcatgtgcttgacccagatggtggcgtccgcaggtgacattggggtgcacggtgttatcatgtgcttgacccagatggtggcgtccgcaggtgacattggggtgcacggtgttatcatgtgcttgacccagatggagtcgcagtgctgctatcacccagggtagagtcctgaggaactcactgactctctgggaattccattagaaacttgcatgagggaagtgtttaccaggacgcgagaatgcgcatctcctcacccctgagatgcagtagcagaaacaacagaagccacggctccctctgaggggactggatctcctggtctcccaagtattgagggccctctagtgtccctaattgtcagcattctgccagctcccacacagaccttgttttccagagcagttctaaaaacaagttctcctccaccagcctcgttctctgaggacagagctgggcgctcagactggctggcggggaacagctgctgcacacctgagggcccctgcacacacctgaggggcccccatacacaccagaaggcccctgcccacaccttagggtccatatacacacaccagagggcccctgcacacacctgagggtctacacacacatacaccagagggctcctgcacacacctgagggctcctgcacacacctgagggtacatacacacacctgaggacccttgcacacacctgagggtccacacatacctcccaccccctgtaccccgcaacacctgaggctcttcacatgcacacatacccaagggcctaaatggccactggggacgtgtttgaggttaggtggtggccctcatagacttagagatgtttcttttctactccccaaatggtgtggggagctctgcctagaagctctgagcataaagtagccccaatgaggaggcctgacgggcgctggatgcacacgtctgtgtgatgcggtttctcagtggtagagcgaagtacgttttcctcttttctgaggattcaagaacatccctaattctaggggatggttgtgtctccccgtttgtgtgcagacactggaagcagagtaggaaggtcgactgtggcctcctattttaacagtcccttcaaattcccacaacagcaataaaccgtcaaaagtggtgtgcttgctttctaaatccgcaaagcactcgtctctgtgaatgggcgcctcgtttcctaccttggactttttttaaagaggcccaggtgaaagattccacaacccagccgcatgggcatgacttagcctggcaatgagctcacacttcagcggtagactagaaagcgattgagccatggtaacaacgcagatctagtgatgactgaggagtccaacttcccatcatcctctgctcaggtgaagccagccctagacatgtgacttccacatctggtcctggtgcatgggatggctcctgtctgccttcttcctgtgcaattcttcatcctcagagggagcacaggtggctagtttccctctgagctttgtc

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