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2021-12-06 11:40:42, GGRNA.v2 : RefSeq release 208 (Sep, 2021)

LOCUS       XM_039087770            5122 bp    mRNA    linear   ROD 21-JAN-2021
DEFINITION  PREDICTED: Rattus norvegicus lysine-rich nucleolar protein 1
            (Knop1), transcript variant X1, mRNA.
ACCESSION   XM_039087770
VERSION     XM_039087770.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Rattus norvegicus Annotation Release
                                           108
            Annotation Version          :: 108
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5122
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /country="USA: Wisconsin, Milwaukee, Medical College of
                     Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5122
                     /gene="Knop1"
                     /gene_synonym="RGD1565096"
                     /note="lysine-rich nucleolar protein 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 40 ESTs, 27 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 230 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:499255"
                     /db_xref="RGD:1565096"
     CDS             34..1581
                     /gene="Knop1"
                     /gene_synonym="RGD1565096"
                     /codon_start=1
                     /product="lysine-rich nucleolar protein 1 isoform X1"
                     /protein_id="XP_038943698.1"
                     /db_xref="GeneID:499255"
                     /db_xref="RGD:1565096"
                     /translation="
MDAVSTATQGAAKLRPGRRTISRGRARNSKLTSGSRLRGCSRGDAWPANRPVMVNKTQKEDLGPRLPEKKKKKKKKKKVANVSEPETQYSVLNNNDYFIDVSPPRATSPFNNVGEVQVPEMSLGKRKKKKKSCSTHLDEYLGKDEPTWTRQIKSPSPRRQVLEQSAEGLIREKKKKRRKSLSKVASQGSGLKTSPDSKHAKEVSKAGRKPKKHRKEKKLPDMEAFPPQDSWIPEAGDALHSCLEGAEAEEQAALGHKRKQGSPRDHSMKKKKKKKTHQEGDILPVNSKISMENSLKKGSKKSVRSEALDFIPIDSLKAPGKKKVKSKKKVEQPVGEGLAVKRKKKKRRKESGVKEDPWQEEKEESDTDLEVVLEKKGNMDEACIDQVRRKALQEEIDRESGKTEVSEPKKWTGTQFGQWDTAGFENEEQKLKFLKLMGGFKHLSPSFNRPPSMTVRSNMALDKKSSDTLQQSLQQDYDRAMSWKYSRGAGLGFNSEARKVFYIDRNASKSIKLQD"
     misc_feature    1288..1509
                     /gene="Knop1"
                     /gene_synonym="RGD1565096"
                     /note="Small acidic protein family; Region: SMAP;
                     pfam15477"
                     /db_xref="CDD:406039"
ORIGIN      
acgctgaggctggatgcttgtctaggcacggccatggacgccgtttctacagcaacccagggcgccgcgaagctgcgacccggaaggagaacgatttcgagggggcgggccagaaattcgaagctgacttccgggtcgcggctgcgcgggtgctcacgtggggatgcttggcctgctaatagaccagtaatggtcaacaagactcagaaagaagacctgggcccacggctcccagagaagaagaaaaagaagaagaagaaaaagaaggtggcaaatgtctcagaaccagagactcagtactcagtcttaaacaataatgattacttcatagatgtttctcctccaagggctacatccccttttaacaatgtgggtgaggtgcaggtccctgagatgtcactgggcaagagaaagaagaaaaaaaagtcctgtagcacacacttggatgagtacctgggcaaggatgagcctacatggacaagacagataaagtcacctagccctagaaggcaggtccttgagcagtcagcagaaggcctcatcagagagaagaaaaagaagaggcggaagtccttatcaaaggttgcctcccaaggctcagggctgaagacttccccagactccaagcatgccaaggaggtaagcaaagctggtaggaagcctaaaaagcacaggaaggagaagaagcttccggacatggaagcttttcctccccaggactcttggatccctgaggctggggatgctttgcactcatgcttagagggggcagaggccgaagagcaggcggccttggggcacaaaaggaagcaggggagccccagagatcacagcatgaaaaagaagaagaagaaaaagactcatcaggagggagacatcctcccggtcaactccaagatctccatggagaacagcttgaagaaagggagtaagaagtcagtcagaagtgaagcgttggatttcatcccgatagacagcctgaaggcccctgggaagaagaaagtgaaatccaaaaaaaaggtggagcagccagttggtgaagggctggctgtgaaaaggaagaaaaagaagaggagaaaagagagcggagtaaaggaagacccctggcaggaggaaaaagaggagtcagacacagacttggaggtggtactggaaaaaaaaggcaatatggatgaggcctgcatagatcaggtgagacggaaggccttacaagaagagattgatcgtgagtctggcaagacagaggtttcagaacccaaaaaatggacgggaacccagtttggccagtgggacactgcgggctttgaaaatgaagaacagaaactaaaattcctgaaacttatgggcggctttaagcatctatccccgtcattcaaccgtcctcccagcatgactgtcaggtccaacatggccctggacaagaagtcttcagatacgctccagcagagtctgcagcaggactacgaccgggccatgagctggaagtacagccgaggggctggcctgggctttaactctgaggcccgcaaggtcttctacattgaccggaatgcctccaagtctatcaagttgcaagattaaattttattgtcctgttcttcaagctgcatttcttgctcagttttgcagttggcttgaactagtcatctgcagttattgaggaccagtatgaattgttaaagcctattttctgttaaacattccacctccttgggtgacagtattttaatagtagctagctgttgttgacatgtgaagggtcctgactaaaatgttttccttgcattgatatacttaaacctaattatggaatgggtgctattctcagctctatcaagttcagggataaagtaataaaacggcccagggtcaccttccgttaagtgccatgaagagtacatcacccagagatcagtgaagaaagcaagtgtcatgccatgacttccacgggaaccagcaagtttgttttccttctccctcatcaggaggcaggtgtggtgcagcaggcagctggctgagcttcccctctgcagccaacacacctctgagctggcctctctccagctgccgccatcctcccatctgactgctaagcttggacctgatgttgctgtgttggctgggtctcaaacaaggcattttggacagcaggtgatcctgcgtgtggacccatgacagattctcggcagcatgttctgtcttttgtgttcactagaccgaagacctcgtatacttatgtgatgaagtcaaatgtaggagtgaagaagatacttcatctgctgcaggcaccatactcacccctactaaaaatcacagcaatcttcatggagttccagatacagagatccacgtggcatgattttctcttccaccagcttttggcagtctggtatcaaggttcagataaggatattttcctatgtcttggcctgatctctcacgaacagaaacactggctggggctgggggtgtgatggagggagtcaggatgtttctccttctgaactaccatcaatgatggtatcctcacactgctaggaagatgagaggcaattccaggcattccagagataggagaaaactcttaaccaaagaaacttctggcagtccttcaggaagccttttatggcttcattcaactctgtagttgttctgtatcagcctccggggtaaggagatgcccctcaggccagccaaggagagggtgaggtgtgcagtactgccaaatgggcagcagaggtgatgctgtgcctgcggaaactgcctccacaccaccctgttccctgacctgtagacgtgggccatattgcaaagacctgtttaagccactttcctgggatgaacttggtccttcgtaaattcttcctcaagattcagaaaagaagaccacctctagtctcaggtggcagaattctgcatttgagtcaatgtctagacaaatctcccctggccttggtgaaccctgggaaccagctgggtaactccaacagttcgtgttccccagaggtcacactccagtctgagcatacctttgctcatcagaaagttgcacatggccatgtgatagatggtttcccatcttatgccacatacaccttggaaacttatcaaagtgtgagagccagatctttttcttagtgttacacagatttcagtgctaaaggacttgattttgtagcttggtacctcagcatagacttaggtgttccatttactcacccttctctctaagtaagaattgaagtttgtaagcaaagacagccatagggtcccctcaagagtgagttcagccttgtctcttgagagaagcacttaatgcccgtgcttctgttaaccaggctccagtcctacccctttttccatgtcttgtaccttccccagaaccctgcaaacttctgcctggtgtagtcctctccaaggtactgatcacctgatcagtgatccaacacagccttgaacttggctgttctctcaggcatttcttaccagcttggtgacactccgtagcaatatccttctccaacagtcaaatctcatggttccttccactttgttcttgagctgatttctgtgctgtatccactgggcccctgaggctaccttgtacaatcatactaacctgtcagaagtctctcctaatgagaagcagttgtcccctgctcttagtactacttggatcatggcaggcaggacacatggacacactcagcagaaggggaattaaaaatcactgaccacatgatttttattattatttttttttttttttttttttttacttttttggtttttcaagacagggtttctttgtgtacccctgaagaccatgctagccttaaaactcagatccacccatctctgcctccggagtgctgggattaaagttgtgcatcaccactgcatggcttcaagccaccactgactatcagatgaatttgaaataagatccttgattacctgagtaggttcttcataaaattccttaactggtaggtagcagaagagttagtgtagaagaggcttggaagacaccacagtcactggggaaggaaaaggccacaagccaagaacacaggcagccttcagaagccatgcagcatttctttccaccaagtgcccacaaaagaacttcgtcatggcaacaccttgacctagcccagagaagccagtgagttctgaccaacagctgtcagtaagaccacaggaagtcactgcttgaaatttgttacagcaacaaggaccaggaatgactgacagacaagcatcctgtttttcacttcctgaaagtctcttcacacatccttcccaacaccaacaggtgctgtttgtggaggtggattccgagactggcctgtcagtaacacttctggtcagcagattatttcaggagccctgtgctgtgtgtgcctaatgtgagctaagccgaggttaacacagaagcactgggaattctctaggtcaatgtaaagcactaatgctattcaacgtgggcagctttgaggcaagagaataacttacaaagaattatttgtgaatttgccagttatttttctaagaattaacaccataatgaaagtgacataagataattatagtggaaagttttgtgaaataaaggccacttgggagtatctgaacagcagcatagtgcattctgggttctggcatgtttgttcacagcagaggaaaggcattctttaatacctggtttttgtttttgagactagggctcatatatcccagattagcttcaaacatgtaactggggaccttgaacagatccaatcctgtctctacctcctaactactgggattatgggtctgtgtcatggcactgttttatatggggccttgtgtctgccaggcaagcattccactaactgagccatatccttagcctcagctattcagttttggttttgtttttaagaaattttattcagttccttgggctggagggtactgtcttcagattggtcccaaatgtatgtacagcaataaccttggtcttaaactaataaagacatgtacacataaatatatatgactttaacttctttctgaggttagtcatgtattgtgtttcagaatgaagataaataaaatcgatacctaaagcaca
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]