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2021-12-06 11:25:51, GGRNA.v2 : RefSeq release 208 (Sep, 2021)

LOCUS       XM_039087006            1715 bp    mRNA    linear   ROD 21-JAN-2021
DEFINITION  PREDICTED: Rattus norvegicus uncharacterized LOC103693553
            (LOC103693553), mRNA.
ACCESSION   XM_039087006
VERSION     XM_039087006.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Rattus norvegicus Annotation Release
                                           108
            Annotation Version          :: 108
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1715
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /country="USA: Wisconsin, Milwaukee, Medical College of
                     Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1715
                     /gene="LOC103693553"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 17 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:103693553"
                     /db_xref="RGD:9317741"
     CDS             200..1579
                     /gene="LOC103693553"
                     /codon_start=1
                     /product="uncharacterized protein LOC103693553"
                     /protein_id="XP_038942934.1"
                     /db_xref="GeneID:103693553"
                     /db_xref="RGD:9317741"
                     /translation="
MVAAITVLTKDAGKLTLGQPLTILAPHAVEALIKQPPDHWLSNSRMTHYQALLLDAERVQFRPVVALNPATLLPLPEEAEQHDCPQILAEVHGTRPDLSDRPLQDADHTWYTDGSSYLVNGEQKAGAAVTTECKVIWASALPAGTSAQWAELIALTQALKMAEGKRLNVYTDSRYAFATAHIHGKIYRRRGLLTSEGKDIKNKTEILAFLAALFLQKRLSIIHCPGHQKGHSPEARGNRLADISAREAAMGTQVLSLKDQDQPTSPQPEQTGWLYTTEDTKLLQKMGAVWYPQLKRWVYTGKTVMPTKMTFELISYLHKLTHLGLKKMKTLLRQEEIDTYLLGRDQALREVTESCRACAQVNPGKAKIGQGVRPRGHWPGTHWEIDFTEIKPGMFGHKYLLVFIDTFSGWIEAFPTKHEMAKVVTKKLLEEIFPSTSSGPTNRAERHLETSSHGLPRQA"
     misc_feature    524..946
                     /gene="LOC103693553"
                     /note="Bel/Pao family of RNase HI in long-term repeat
                     retroelements; Region: RNase_HI_RT_Bel; cd09273"
                     /db_xref="CDD:260005"
     misc_feature    order(536..547,638..643,650..652,713..715,866..868,
                     935..937)
                     /gene="LOC103693553"
                     /note="RNA/DNA hybrid binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:260005"
     misc_feature    1022..1297
                     /gene="LOC103693553"
                     /note="His(2)-Cys(2) zinc finger; Region: zf-H2C2;
                     cl07828"
                     /db_xref="CDD:385237"
     misc_feature    1334..>1498
                     /gene="LOC103693553"
                     /note="Integrase core domain; Region: rve; pfam00665"
                     /db_xref="CDD:395538"
ORIGIN      
taacattaaacggaccttgctgtcctcccctgccttgggtctcccagacatcaccaagccctttgaactatttgtggatgagaaacaagtgtatgctaagggggtcctaacacaaagactgggaccctggaagtgcctggtagcctacctgtctaagaaattagaccctgtggcctccggttggccaccatgcctgagaatggtggcagccattaccgtcctaaccaaagacgctgggaagttgaccttggggcagccactcaccatcctggcaccccatgcagtggaggctttgataaaacagccccctgaccactggctctctaattcccgcatgacccactaccaagccttgctactggatgcggaacgggtccagtttaggcccgtggtcgctctcaacccagccactctgcttcctttgccagaggaggcagaacagcacgactgtccgcagatccttgcagaagtacatggaaccagaccagacctatcggaccgacctctccaggatgctgaccatacgtggtacaccgatggtagcagctacttggtgaacggggaacagaaagctggagccgcggtcactacggagtgcaaagtgatctgggcaagcgccttgcctgctggtacctccgcacagtgggctgaactcattgccttaactcaggcgctcaaaatggcagaaggtaagaggctgaatgtatatacagacagccgctacgcctttgctacggcacacatccatggaaagatctaccggagaagagggctgctcacatctgagggtaaggacattaagaacaagactgaaattctggccttcctggcagctctgttcctacaaaaaagactgagcattatacattgcccagggcatcagaagggacacagccccgaggcacggggaaatcggctagctgacatctcagcgcgtgaggccgccatgggcacccaagttctgtccttaaaagaccaagatcaacccacgtctccacagccggaacagaccggttggctctacaccacggaggacacaaagctcctacagaaaatgggggccgtttggtacccacaactaaaacggtgggtctacacagggaaaacagttatgcctacgaagatgacctttgaattaatctcctacctacataaattaacacacctgggactcaagaagatgaagaccctcttaagacaagaagagattgacacctacctcctgggacgagatcaggccttgcgggaggtgactgaaagctgcagggcctgtgctcaggtaaacccaggaaaagctaaaattggacaaggagtccgtccccgaggacattggcctggtacccactgggaaattgacttcactgaaatcaagcctggtatgttcggacacaaatacctcttagtgttcatagataccttctccggatggatagaggctttccccacaaaacatgaaatggccaaggtggtgaccaagaagctcctcgaagaaatcttccccagcacatcttcaggccctacaaatcgtgcagagagacatctggaaacctctagccacggcctaccaagacaggcttgaacaaccgatggtgccgcacccgttccagatcagagacactgtgtggttgcgcagacatcagaccaagaatctcgagcctcggtggaaaggaccctatacagttctcctgactaccccgacagccttgaaggtagac
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]