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2024-03-29 03:01:32, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_038452183           15006 bp    mRNA    linear   MAM 06-JAN-2021
DEFINITION  PREDICTED: Canis lupus familiaris argonaute RISC catalytic
            component 3 (AGO3), transcript variant X5, mRNA.
ACCESSION   XM_038452183
VERSION     XM_038452183.1
DBLINK      BioProject: PRJNA12384
KEYWORDS    RefSeq.
SOURCE      Canis lupus familiaris (dog)
  ORGANISM  Canis lupus familiaris
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae;
            Canis.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_006597.4) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Canis lupus familiaris Annotation
                                           Release 106
            Annotation Version          :: 106
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15006
                     /organism="Canis lupus familiaris"
                     /mol_type="mRNA"
                     /isolate="Tasha"
                     /sub_species="familiaris"
                     /db_xref="taxon:9615"
                     /chromosome="15"
                     /sex="female"
                     /breed="boxer"
     gene            1..15006
                     /gene="AGO3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 14 ESTs, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 20 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:475336"
                     /db_xref="VGNC:VGNC:37708"
     CDS             139..2019
                     /gene="AGO3"
                     /codon_start=1
                     /product="protein argonaute-3 isoform X4"
                     /protein_id="XP_038308111.1"
                     /db_xref="GeneID:475336"
                     /db_xref="VGNC:VGNC:37708"
                     /translation="
MCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
     misc_feature    139..480
                     /gene="AGO3"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(274..276,319..321,361..363,373..375,427..429,
                     448..450,454..456)
                     /gene="AGO3"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    613..1890
                     /gene="AGO3"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1024..1026,1036..1038,1072..1083,1090..1092,
                     1114..1116,1123..1125,1135..1137,1147..1149)
                     /gene="AGO3"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1228..1230,1234..1236,1444..1446,1858..1860)
                     /gene="AGO3"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
gaaagagacctctggcagcagtgtggagaatagatagaggagaaaaaactaatctcagaagccagttaggaggctttttcaatcactagttcagtttctgccactgccttctacaaagcacaacctgtaattcagttcatgtgtgaagttcttgacattcataatattgatgagcaaccaagacctctgactgattctcatcgggtaaaattcaccaaagagataaaaggtctgaaggttgaagtgactcattgtggaacaatgagacggaaataccgtgtttgtaatgtaacaagaaggcctgccagtcatcaaacctttcctttacagttggaaaatgggcaaactgtggagagaacagtagcacagtatttcagagaaaagtatactcttcagctcaagtacccacaccttccttgtctgcaagtggggcaggaacagaaacatacctacctgccgctagaagtctgtaatattgtggcagggcaacgatgtatcaagaagctaacggacaatcagacttccactatgatcaaagcaacagcaagatctgcaccagatagacaagaggaaattagcagattggtaagaagtgcaaattatgaaacagatccatttgttcaagagtttcaatttaaagttcgggatgaaatggcccatgtaaccggacgtgtacttccagcacctatgctgcagtatggaggacggaatcggacagtagcaacaccaagccatggagtatgggacatgcgggggaagcagtttcacacaggagttgagataaaaatgtgggctatagcttgctttgccacacagaggcagtgcagagaagaaatactgaagggtttcacagaccagctgcggaagatttccaaggatgcagggatgcccatccagggccagccttgcttctgcaaatatgcacagggggcagacagcgtggagcccatgttccggcatctcaaaaacacctactctgggctgcagctcattattgtcatccttccaggaaagacgccagtgtatgcggaagtgaaacgtgtaggagatacacttctgggtatggccacacagtgtgtccaagtgaagaatgtaataaaaacatcccctcaaactctctcaaacctgtgcctaaagataaatgttaaactcggagggatcaataatattcttgtacctcatcaaagaccttctgtgttccagcaaccagtgatctttttgggagcagacgtcactcatccaccagctggtgatgggaagaaaccttctattgctgctgttgtaggtagtatggatgcccacccaagcagatactgtgccacagtaagagttcagagaccccgacaggagatcatccaggacttggcctccatggttcgagaacttctcattcagttttataagtcaactcggttcaaacctactcgtatcatcttttatcgggatggtgtttcagagggacagtttaggcaggtattatattatgaactactagcaattcgagaagcctgcatcagtttggagaaagactatcaacctggaataacctacattgtagttcagaagagacatcacactcgattattttgtgctgataggacagaaagggttggaagaagtggcaatatcccagctggaacaacagtcgatacggatatcacacacccgtatgagtttgatttttacctctgtagccatgctggaatacagggtaccagccgtccttcacactatcatgttttatgggatgataactgctttactgcagatgaacttcagctgctaacttaccagctctgccacacttatgtgcgctgtacacgatctgtttctatccctgcaccagcgtattatgctcacctggtggcattcagagccagatatcatctcgtggacaaagaacatgacagtgctgaaggaagtcatgtttcaggacagagcaacgggcgagatccacaagctctcgccaaggctgtacagattcaccaagataccttacgcacaatgtactttgcttaaaaagtccaagaatattctgtgagaggaagaactgaaagatgcatcgacatacagcatatgtttccagttgagtggggatgcctccagccatacagcaaccaacactgtgtggggaccagggtctgatttttatgttgatacaaggaagattgtttacttcatcaaggaacacagcaccattatgcaatatgaaaccagccaactgcttttttgtgcggtctccttaggaagtatcgccattgttttgttttcactttcttgtagtctaacccttttaatgcctttacctcaagttgcttggcagcacaactatctttgcaaaaaaagtaaagaaaaagtaaatgacagtttaaaaaaaaaaaaacacacctacatgaataatcagtgattgttcacgattatgtgtgcaaaaaaattaatgtgcattcgtgtattcttgtaaaaagtatctgtgtatattttaaatatatacatgtatacttcatatgcatatatatctggatctacattgctaatagatatatatgtctgtgcgtgtattttatagttcattccattggggaactttcccttttatcatcttcccaccaccactttgatttttctctctacctccctcgcaacctcatcatctacattttttttcttgatgctaccagtgacattcagatgttcatgtatttagttcatttggatataaagcatggcaaaactagatttttatttttattttgcacatcctactcctgtctcttgtctcatacacaattctaagtcctcaactcttgatactgctttcttaagaaacaaaattattatatatatatatataactgtgtatatatatacatatatatatatatatatatatatatatactgtttctgtgagagtactgtctgccccctcctgctccgaacttacatttgccatttgtgcaatgtgtacataagcagtagcaaccttaaactattctttttctttagtttgttaaagctgctataaatataaaaccttgtcagaagttgtaactcaaaaatttccctctataagtgatgtgtatcctaaaaccttctgtttctatgggttatacatgaaaatcccttatagcttttataaagggcaaatattttaaatgattggaagtctttagggttgaggcctctgaaattgggtggagagagagaaggggttattgaggatttttttaattttaatttttttttgctagtttacttgctgcctctcataccttaatgtgattttcatatatatatatttttatatatatgtgtgtatatataaacatatatgtatgtgttttgaagtacagcttccttttcttttatatttattagaatagtgctttaataattagagaactgtattggcaacatcttttatagaaatgtaatcatgtttattttaagaactgacaacttgtttttgctgtcttttagtgcaataagcagttttaaaggaaagctgtgtctgtttgatatctttaccacagatagtgggagaaacaggcacctccataattttaaaagggcaaagtaatacagccttaatttcagaaggaaagttttttgtaatttttcaagtttaaagcatgtcttttaaaaatcaaaatgaaaatgaaggaagttgaatttcctacgtgagtctgacattgaatattagagacagagatgagctttgatttaggaaatgatggtgaataggggcacctggctgactcagtcactagagcatgtgactcttgatctttgatttgtgagtccaagccgcatgttgggcatggagcctacttacaaaaatagcttaagatttagaagacatttaattctttgaaaatagatcgtgtttattgaacaatcatactggttaggtgcccattttcatttactaaaattaatcaagaaaatgtaaaatgatactttaaaaacatttttttgccaatttatcagcagtgtaactttccttttaaaattagggttatgatggcaaaggaagttaggactttgatcattttaaataagttaaatcactgaaatgtggaaaaagttttataaaacttctgttttattggtttcattcactttaagatattaaaaaatattatagagctgtcaaaatcgagttcatcagtaacatggaatcaggggagctttgcactttgtgactcatgaaaattgcattttaatttttttttttttgcactggttcagagtatagatactacagattgtttccagtgggcattgttaaacctttcagaattccatctgcacatgataacaaatggattagttctttagtttctctcttacctataattcgctcttatttgccaatttactgtattttgagcctaaaatctgagcccatgtcctccaacaggtatgaaatctttcgttcctctgccagaaaactaagaaagtactgtattttgtatgtttattattgaagtgtctgaaatgcaatttacaacactgtttcaaagctctttacatgaagtaatatttgtatagtatatacatttttttctcccaaccctccccttctcctacaaaaatttcctataaagcatgtatttttttttttacatagaaatttcactaaatatagtcaggaacatgaaaaccgtatatcctagatggtaaaaacttgattgctgtatgttctctcagtatgagtaatataccttcctttaccaatagaagttacacagacttatgtggaaaactgtagggcccagggaagaactgtagatacctttttcctatttactgcttcacctaattttcagttacttagctttccatgtgctagaatgaaacccgtaatttaaatctatttaggacttttactgaggaaaaaccatttttttaaatataaagctttacctttaaagtaagttcttttttagggtttctttcttacagtttcacattgctagtttaagattggttaacttg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//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]