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2024-03-29 15:47:47, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_038337870            3768 bp    mRNA    linear   ROD 14-JUN-2021
DEFINITION  PREDICTED: Arvicola amphibius NRDE-2, necessary for RNA
            interference, domain containing (Nrde2), mRNA.
ACCESSION   XM_038337870
VERSION     XM_038337870.2
DBLINK      BioProject: PRJNA687149
KEYWORDS    RefSeq.
SOURCE      Arvicola amphibius (Eurasian water vole)
  ORGANISM  Arvicola amphibius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Cricetidae; Arvicolinae; Arvicola.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_052053.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jun 14, 2021 this sequence version replaced XM_038337870.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Arvicola amphibius Annotation
                                           Release 101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3768
                     /organism="Arvicola amphibius"
                     /mol_type="mRNA"
                     /db_xref="taxon:1047088"
                     /chromosome="7"
     gene            1..3768
                     /gene="Nrde2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:119819605"
     CDS             112..3609
                     /gene="Nrde2"
                     /codon_start=1
                     /product="nuclear exosome regulator NRDE2"
                     /protein_id="XP_038193798.1"
                     /db_xref="GeneID:119819605"
                     /translation="
MALFPAFADVSEASGGGASRKELDWLSNPSFCVGNLTSLSQRTEEVTALAAEGSPLTRSPLRSELSGESDTSRTATQVSRKRKKEKKKKRKHQHRKKAKRRHDQSSSGGSESDTDSGKDRSSRSIKDSQKESEKPSQGSDAVGAAVAGHRSIWLEDNQTLAEVFMTDRKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCISWEGTSAVKKHAHKHLERYFTKKNVGLMRTEGIAVCGNTEPPSSEPVPFIPVKDSADVATPVATWLNPLGIYDQSTTQWLQGQGPLEQEPKQPDSQQDRESAVLKARVEEFNRKVRENPRDTQLWMAFVAFQDEVMRSPGLCALEDGEQEKHRKSLKLLLEKKLAVLERAIESNPSSVDLKLAKLQLCAEFWEPSALAKEWQKLLFLHPNNTDLWQRYLSFCQSQFGTFSVSKLHSLYGKCLSTLSAVKDGSILSHPVLPGTEEAMFALFLQQCHFLRQAGHSEKVISLFQAMVDFTFFKPDSVKELPTKVQVEFFEPFWDSGEPRVGEKGARGWRAWMHQQERGGWVLVNPDEDEEEPEEDDQEIKDKTLPRWQIWLAVERSRDQRHWRPWRPDKTKKQTEEDCEDPERQVLFDDIGQSLIRLSNPGLHFRLIEAFLQFLGVPSGFLPPASCLYLAMDESSVFDSELYDEKPLTYFNPSFSGISCVGYMEQLGCPRWTKGHSREGEDFIRNVFHLVLPLFSGKQKSQLCLSWLRYEVAKVIWCLHTKKKRLKSQGKNCKKLAKNLLKEPENRNNFCLWKQYAHLEWLLGNIEDARKVFDTALSMAGSSELKDRELCELSLLYAELEMELSPDLRGAATGRAVHVLTRLTESSPYGPYTGQVMATQVLKARKAYERALQDCLGQTCASDPAPAESLDCLGSLVRCFMLFQYLTVGIDAAVQIYGQVFAKLKGSVLPEGPGLEDSARSQSLSSVLEAVTLMHTSLLRFHMNSSVYPLAPLRETLSEALKLYPGNQVLWRAYVQIQNKSHSANKTRRFLDVVTRSAKHLEPWLFAIEAEQMRRRLVDSVQRVGGREVHATIPETGLTHRIRNLFENAIRSDKGSQCPLLWRMYLNFLVSLGNKERSKGVFYKALQSCPWAKVLYMDAMEYFPDELQEILDVMTEKELRVRLPLEELELLLED"
     misc_feature    601..888
                     /gene="Nrde2"
                     /note="MTR4-interacting domain (MID) found in nuclear
                     exosome regulator NRDE2 and similar proteins; Region:
                     NRDE2_MID; cd22200"
                     /db_xref="CDD:412062"
     misc_feature    order(601..624,631..636,646..651,655..657,661..705,
                     712..720,724..732,754..762,772..777,781..786,793..813,
                     838..849,859..888)
                     /gene="Nrde2"
                     /note="MTR4 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412062"
     misc_feature    1054..2052
                     /gene="Nrde2"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:429988"
     polyA_site      3768
                     /gene="Nrde2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
agttcaggaaagactacatttcccagagtgcatggcgggacagagtcctccaaccagagcgcttcagccggcgccatttctgtggagggagtggtggtgcggcctgtgaacatggcgctgttcccggcctttgcggacgtaagtgaggcctccggtggtggggcatccaggaaagaattagactggctgagcaacccaagcttttgtgttgggaatctaacgtctctgagccaacgaactgaagaggtcacagcccttgctgctgaagggtcaccactgacaaggagtcctctgaggtcagagctctctggtgagagtgacactagcagaacagccacccaggtcagcagaaaaaggaagaaagagaagaagaagaagaggaaacatcagcaccgcaagaaagctaagaggagacacgaccagtcgagcagcggtgggtctgagtcagacacagattctgggaaggacaggtcttccagaagcatcaaggacagtcagaaggaatctgagaaacccagtcaggggagtgacgctgttggtgctgctgttgctggacaccgctccatttggctggaagacaatcagactctggcagaggtcttcatgacagataggaaaccagatcctgccaactgggagtacaaatctctttaccgaggggatatagcaaggtacaagaggaaaggagactcctgcctgggcattaatcctaagaaacagtgtatatcttgggaagggacttctgcagttaagaagcatgcacacaagcacctggagcgctattttaccaagaagaatgtgggattaatgcgcactgaggggattgctgtgtgtggtaacaccgagcctccctcctctgagccagtcccattcatcccagtgaaggactctgcggatgtggctactcctgttgcaacatggctgaatcctctggggatttatgatcagtcaactacacagtggttacaaggacagggtccactagagcaagagccaaagcagccagactcacagcaggacagggagagcgctgttcttaaggccagagtggaggagttcaacagaaaagtgcgggagaatcctcgggatacgcagctatggatggcctttgtagctttccaggatgaggtcatgaggagccctggcctgtgtgctcttgaggacggagagcaggagaagcacaggaagtctctgaagctcctcctggagaagaagctggccgtgctagagcgggccatcgagagcaacccaagcagtgtggaccttaagctcgccaagctgcagctgtgtgcggagttctgggagcccagtgcgctggccaaggagtggcagaagctcctctttctgcaccccaacaacacggacctgtggcagcgctacctctccttttgccagagtcagtttggcaccttctctgtgtccaaactccacagtctgtacggcaagtgcttgagtaccttgtctgctgttaaggatggcagcatcttatcccacccggtactaccgggcacagaggaggccatgtttgctctctttctccagcagtgccactttctgcggcaggccggccactcggagaaggtcatctctttgttccaggccatggttgacttcaccttcttcaagcctgacagtgtaaaagagctgcctactaaagtacaggtggaattctttgaacccttctgggacagcggagagccccgtgttggggagaagggcgcccgaggctggcgggcgtggatgcaccagcaggagcgtggtggctgggtgcttgtcaatccagatgaggatgaggaggagccagaagaggatgaccaggagataaaagataagactctgcccaggtggcagatctggcttgctgttgaacgttctcgagaccagaggcactggcggccctggcgtccagataagaccaagaagcaaacagaagaagactgtgaggaccccgagagacaggtgctgtttgacgacatcgggcagtctctgatcagactctccaacccaggtcttcacttccggctcattgaggccttcctgcagttcctgggcgtgccttccggtttccttcctccagcctcctgcctttacctggccatggacgagagcagcgtttttgatagtgaactttatgatgaaaagcccttgacttacttcaacccttcgttttcgggcattagctgtgttggctacatggagcagttgggctgtcctcgctggaccaaaggtcacagccgagagggcgaggattttatccgcaatgtcttccaccttgtgctgcctttgttctcaggcaagcagaagtctcagctctgcctctcctggttgcggtatgaggttgccaaggtcatttggtgtctacacactaaaaagaagcgattaaagtctcagggaaagaactgcaaaaaactagccaagaatctccttaaagagccagaaaaccgcaacaacttttgcctctggaaacagtatgcacacctggagtggttgcttggtaacatagaggatgccagaaaagtgttcgatacagcactcagcatggcaggcagcagtgagctgaaggaccgtgaactctgtgaactcagtctgctttatgccgagctggagatggaactgtcgcccgacttgcgaggagcggccacaggccgagctgtccatgtgttaacgcgactgactgagagcagcccctacgggccctacactgggcaggtcatggccactcaggttctgaaagcccgaaaagcttatgaacgtgctctgcaggactgtctgggacagacttgtgcctcagacccagctcctgcagagtccttggactgcttggggagcttggtcagatgctttatgcttttccagtatttgactgtcgggatcgatgctgctgtgcagatatatggacaggtgtttgccaagctgaagggctctgttctcccggaaggccctggcctggaggacagtgccaggtcccagagtttgagcagtgttctcgaggccgttaccctgatgcataccagtttgctgcgattccacatgaacagtagtgtgtatcctctggctccacttcgagagacgctctcagaggctctaaagctgtatccaggcaaccaggttctttggagggcatatgtacagattcagaataagtcccacagtgctaacaagaccaggagattcttggacgtagtcaccaggtctgccaaacacttggagccgtggctgtttgcaatcgaagccgagcagatgaggagaagactggtggactctgttcagagggtaggtggtagagaggtccacgctaccatcccagagactggccttacgcatcggatcaggaacttgtttgaaaatgcaattcggagcgacaagggcagccagtgccccctactgtggaggatgtatttgaactttttggtttccttaggaaacaaggagagaagcaaaggtgtgttctacaaggccctccagagctgtccctgggcaaaggtgctgtacatggatgccatggagtacttcccagatgagctgcaggagatcctggatgtgatgactgagaaggagcttcgtgtacgcctgcccctggaggagctggagcttctgctggaggactagagtcaaccggggctgtgctggtccgcaggagggccctgctgtgcaagggctttctccactgtttgggtggggtttggacttactgttttacatattatatatgtgatcaactatatgtacagatggagccatgccagtgataaacctttttatggttga
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]