2024-03-29 18:40:07, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_037785959 2654 bp mRNA linear VRT 19-NOV-2020 DEFINITION PREDICTED: Sebastes umbrosus zinc-binding protein A33 (si:ch73-54f23.4), mRNA. ACCESSION XM_037785959 VERSION XM_037785959.1 DBLINK BioProject: PRJNA675852 KEYWORDS RefSeq. SOURCE Sebastes umbrosus (honeycomb rockfish) ORGANISM Sebastes umbrosus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Scorpaenoidei; Sebastidae; Sebastinae; Sebastes. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051279.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Sebastes umbrosus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2654 /organism="Sebastes umbrosus" /mol_type="mRNA" /isolate="fSebUmb1" /db_xref="taxon:72105" /chromosome="11" /sex="male" /tissue_type="muscle" /dev_stage="adult" /country="USA: California coast" /lat_lon="33.599833 N 118.265167 W" /collection_date="05-Oct-2017" /collected_by="University of Washington" gene 1..2654 /gene="si:ch73-54f23.4" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:119497679" CDS 188..1276 /gene="si:ch73-54f23.4" /codon_start=1 /product="zinc-binding protein A33" /protein_id="XP_037641887.1" /db_xref="GeneID:119497679" /translation="
MYQNHNKDTNNNCNKSLLSDHKGKLFQAIKRIKHELDECRDAERETHIESVHVENNFDGLEREIRAEFQNIHRFLDEEEHKDVERLWRERQKQVKQLKEREKKIAQQGRDLEGAITVLNSKLAEEDSPKLLREIQDLIKRSQVSFVPPAEVDTEVRSGQFVGPIQYRIWKHMKSCLYPNITSMTFDPETAHPSLSLSKSCTSVWFDEDKDTTDCQANPQRFHYYYCVLGHQSFTTGRHYWEVEVGRKTAWKLGVARQDVPRGEMDHTGDSGGLWTLALKDGSVQACTDPEPTKVTVSVRLVRIGVFLDCEKEEVAFYNAVTMAPIYTFTMGTVEVPLFPFYNPCDGDDGKNTAAIKIFNPSL"
misc_feature 248..613 /gene="si:ch73-54f23.4" /note="B-Box C-terminal domain; Region: BBC; smart00502" /db_xref="CDD:128778" misc_feature 734..1258 /gene="si:ch73-54f23.4" /note="PRY/SPRY domain in tripartite motif-containing (TRIM) proteins, including TRIM5, TRIM6, TRIM7, TRIM10, TRIM11, TRIM17, TRIM20, TRIM21, TRIM27, TRIM35, TRIM38, TRIM41, TRIM50, TRIM58, TRIM60, TRIM62, TRIM69, TRIM72, NF7 and bloodthirsty; Region: SPRY_PRY_C-I_1; cd13733" /db_xref="CDD:293968" ORIGIN
taaatcgctgctgccagccaaacagccagcccgcaagccctcctggcagctaaagtcatctgccttcctcccacccctcctcttttgtcttttaatggatccatatattctcaaatcgagctgtggacgctgatctatgcctgtcaatgcgatttctcttgttaatttgctgcttggataaactggaatgtaccaaaaccacaacaaagacaccaacaacaactgcaacaaaagccttctctctgatcacaagggaaagcttttccaggctattaaaagaatcaagcacgagctagatgagtgcagagacgcagagagagagacgcacatagagtcagtgcacgtagagaacaattttgatggcctggaacgagaaatcagagccgagtttcagaacatccatcgtttcctggatgaggaggagcataaggacgtggaacgactgtggagggagagacagaaacaagtgaagcagctgaaggaaagagagaagaagatagcacagcaagggagagacctggagggagcaatcactgtgctcaacagcaaactggctgaggaggacagtcctaaactgctcagagaaattcaagatctcataaaaaggtctcaggtcagctttgttcctccagcggaggtggacacggaggtgcgctccggccagttcgtggggcccatacagtacaggatatggaagcacatgaaaagctgcctctacccaaatattacatcaatgacctttgaccctgagacagcccaccctagtttgtccctgtcaaagtcttgcacctcagtgtggtttgatgaggacaaggacacgacggattgccaggccaacccacaacggttccactattattactgcgtgttaggccaccagagcttcaccacaggccgacactactgggaggtggaggtgggacgtaagacagcgtggaagttgggcgtggcacgacaagatgtcccgagaggggagatggatcataccggcgactccggtggcctctggacgctggccctgaaggacggatctgtccaagcctgcaccgacccggagcccaccaaggtcaccgtatctgtccgacttgtccgcatcggtgtgttcttagactgtgaaaaggaggaggtggctttctataacgctgttaccatggcgccaatctacaccttcactatgggaacagtggaggttcctctgttccccttctataatccatgtgatggagatgatgggaagaacacagcagcaattaagatctttaacccttcactatgatgagcagctacagggatttactacacaaagtgttaattttatattagtagcattattatttagagctgaagctattagaatattaattgacaattattttgatcatcaattaatggttagtaggaataatctttcaagcaactaaaattactgcctcacagttgttttcctccaccaaccagtcaggttgcagtttacatccatgtctgtccgaaatgtcatctcttcatcgttttatcctgttagacattagtgggaaattgtcatgattatcatgtgaaatcttgagttatggccaaaaacgtgttttgtgaggtcacagtgacctttgaccttgagtcaaagtggatgtttgtgcccaatttgaagaaattccctcaaggcgttcgagatattgtgttcatgagaatgggacatacgtaaggtcaccgtgaccttgacctttgacctttgactatcaaattctaatcagttcatccttgagttcgggtggacggttgtgctaaatctgaggaaattccctcaaggcgatcctgagataacacacatttgtcactatactctgacatattctagacaaactgatgaattgattgacagatttttcgataaagaattatataatgtactcacaacttgctggagagtgttgcaaatagagaaactccacatcaaatgattttaaataaaacatggcagttactgtaaccacaaatattttttctgttttgaatgcacatcatcttctcgtactgtgattatttttaataaatgtggtgatgatgcttgaaatgaatcttgaactgatgtctttgtaaaagagttaaggaaaacaaaacacaagggaaggttgctatctgctgccggccctggagcttcagggtccatagcaggtgttaacagcattttgatgttacctttggcctgtttataaatatctctggtgcgcctgcttagctatgatgcgtccaggcgaggttatggaagctgggattagtggcacgccggggcccgaggggtgagaaagaggcgcgtgacacaaacgatggctgacattgagtgagacgactcactgagatggaacagacagctccgagtcataactgtccttctgcaactttgtcgctctgaagaataggaaaacaaagacaacaggacggcaaacatcataatcgcttgtttattcttagtattcctttagacattaaataaagaaattttctttacaaaacatctgtgtgaagtgttgtgcaaaaagggagtacagagagaacatgtgggatgtcacaccacacccaggccagaacagcagaagtaaacagagaagatcagggcagagacaactcacatagtgcaacaagtgccagtggtattaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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