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2021-12-06 05:26:28, GGRNA.v2 : RefSeq release 208 (Sep, 2021)

LOCUS       XM_037785959            2654 bp    mRNA    linear   VRT 19-NOV-2020
DEFINITION  PREDICTED: Sebastes umbrosus zinc-binding protein A33
            (si:ch73-54f23.4), mRNA.
ACCESSION   XM_037785959
VERSION     XM_037785959.1
DBLINK      BioProject: PRJNA675852
KEYWORDS    RefSeq.
SOURCE      Sebastes umbrosus (honeycomb rockfish)
  ORGANISM  Sebastes umbrosus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Eupercaria; Perciformes; Scorpaenoidei;
            Sebastidae; Sebastinae; Sebastes.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051279.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Sebastes umbrosus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2654
                     /organism="Sebastes umbrosus"
                     /mol_type="mRNA"
                     /isolate="fSebUmb1"
                     /db_xref="taxon:72105"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="muscle"
                     /dev_stage="adult"
                     /country="USA: California coast"
                     /lat_lon="33.599833 N 118.265167 W"
                     /collection_date="05-Oct-2017"
                     /collected_by="University of Washington"
     gene            1..2654
                     /gene="si:ch73-54f23.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:119497679"
     CDS             188..1276
                     /gene="si:ch73-54f23.4"
                     /codon_start=1
                     /product="zinc-binding protein A33"
                     /protein_id="XP_037641887.1"
                     /db_xref="GeneID:119497679"
                     /translation="
MYQNHNKDTNNNCNKSLLSDHKGKLFQAIKRIKHELDECRDAERETHIESVHVENNFDGLEREIRAEFQNIHRFLDEEEHKDVERLWRERQKQVKQLKEREKKIAQQGRDLEGAITVLNSKLAEEDSPKLLREIQDLIKRSQVSFVPPAEVDTEVRSGQFVGPIQYRIWKHMKSCLYPNITSMTFDPETAHPSLSLSKSCTSVWFDEDKDTTDCQANPQRFHYYYCVLGHQSFTTGRHYWEVEVGRKTAWKLGVARQDVPRGEMDHTGDSGGLWTLALKDGSVQACTDPEPTKVTVSVRLVRIGVFLDCEKEEVAFYNAVTMAPIYTFTMGTVEVPLFPFYNPCDGDDGKNTAAIKIFNPSL"
     misc_feature    248..613
                     /gene="si:ch73-54f23.4"
                     /note="B-Box C-terminal domain; Region: BBC; smart00502"
                     /db_xref="CDD:128778"
     misc_feature    734..1258
                     /gene="si:ch73-54f23.4"
                     /note="PRY/SPRY domain in tripartite motif-containing
                     (TRIM) proteins, including TRIM5, TRIM6, TRIM7, TRIM10,
                     TRIM11, TRIM17, TRIM20, TRIM21, TRIM27, TRIM35, TRIM38,
                     TRIM41, TRIM50, TRIM58, TRIM60, TRIM62, TRIM69, TRIM72,
                     NF7 and bloodthirsty; Region: SPRY_PRY_C-I_1; cd13733"
                     /db_xref="CDD:293968"
ORIGIN      
taaatcgctgctgccagccaaacagccagcccgcaagccctcctggcagctaaagtcatctgccttcctcccacccctcctcttttgtcttttaatggatccatatattctcaaatcgagctgtggacgctgatctatgcctgtcaatgcgatttctcttgttaatttgctgcttggataaactggaatgtaccaaaaccacaacaaagacaccaacaacaactgcaacaaaagccttctctctgatcacaagggaaagcttttccaggctattaaaagaatcaagcacgagctagatgagtgcagagacgcagagagagagacgcacatagagtcagtgcacgtagagaacaattttgatggcctggaacgagaaatcagagccgagtttcagaacatccatcgtttcctggatgaggaggagcataaggacgtggaacgactgtggagggagagacagaaacaagtgaagcagctgaaggaaagagagaagaagatagcacagcaagggagagacctggagggagcaatcactgtgctcaacagcaaactggctgaggaggacagtcctaaactgctcagagaaattcaagatctcataaaaaggtctcaggtcagctttgttcctccagcggaggtggacacggaggtgcgctccggccagttcgtggggcccatacagtacaggatatggaagcacatgaaaagctgcctctacccaaatattacatcaatgacctttgaccctgagacagcccaccctagtttgtccctgtcaaagtcttgcacctcagtgtggtttgatgaggacaaggacacgacggattgccaggccaacccacaacggttccactattattactgcgtgttaggccaccagagcttcaccacaggccgacactactgggaggtggaggtgggacgtaagacagcgtggaagttgggcgtggcacgacaagatgtcccgagaggggagatggatcataccggcgactccggtggcctctggacgctggccctgaaggacggatctgtccaagcctgcaccgacccggagcccaccaaggtcaccgtatctgtccgacttgtccgcatcggtgtgttcttagactgtgaaaaggaggaggtggctttctataacgctgttaccatggcgccaatctacaccttcactatgggaacagtggaggttcctctgttccccttctataatccatgtgatggagatgatgggaagaacacagcagcaattaagatctttaacccttcactatgatgagcagctacagggatttactacacaaagtgttaattttatattagtagcattattatttagagctgaagctattagaatattaattgacaattattttgatcatcaattaatggttagtaggaataatctttcaagcaactaaaattactgcctcacagttgttttcctccaccaaccagtcaggttgcagtttacatccatgtctgtccgaaatgtcatctcttcatcgttttatcctgttagacattagtgggaaattgtcatgattatcatgtgaaatcttgagttatggccaaaaacgtgttttgtgaggtcacagtgacctttgaccttgagtcaaagtggatgtttgtgcccaatttgaagaaattccctcaaggcgttcgagatattgtgttcatgagaatgggacatacgtaaggtcaccgtgaccttgacctttgacctttgactatcaaattctaatcagttcatccttgagttcgggtggacggttgtgctaaatctgaggaaattccctcaaggcgatcctgagataacacacatttgtcactatactctgacatattctagacaaactgatgaattgattgacagatttttcgataaagaattatataatgtactcacaacttgctggagagtgttgcaaatagagaaactccacatcaaatgattttaaataaaacatggcagttactgtaaccacaaatattttttctgttttgaatgcacatcatcttctcgtactgtgattatttttaataaatgtggtgatgatgcttgaaatgaatcttgaactgatgtctttgtaaaagagttaaggaaaacaaaacacaagggaaggttgctatctgctgccggccctggagcttcagggtccatagcaggtgttaacagcattttgatgttacctttggcctgtttataaatatctctggtgcgcctgcttagctatgatgcgtccaggcgaggttatggaagctgggattagtggcacgccggggcccgaggggtgagaaagaggcgcgtgacacaaacgatggctgacattgagtgagacgactcactgagatggaacagacagctccgagtcataactgtccttctgcaactttgtcgctctgaagaataggaaaacaaagacaacaggacggcaaacatcataatcgcttgtttattcttagtattcctttagacattaaataaagaaattttctttacaaaacatctgtgtgaagtgttgtgcaaaaagggagtacagagagaacatgtgggatgtcacaccacacccaggccagaacagcagaagtaaacagagaagatcagggcagagacaactcacatagtgcaacaagtgccagtggtattaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]