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2024-03-29 00:30:11, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_037748436            4402 bp    mRNA    linear   VRT 19-NOV-2020
DEFINITION  PREDICTED: Sebastes umbrosus solute carrier family 45 member 3
            (LOC119475566), mRNA.
ACCESSION   XM_037748436
VERSION     XM_037748436.1
DBLINK      BioProject: PRJNA675852
KEYWORDS    RefSeq.
SOURCE      Sebastes umbrosus (honeycomb rockfish)
  ORGANISM  Sebastes umbrosus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Eupercaria; Perciformes; Scorpaenoidei;
            Sebastidae; Sebastinae; Sebastes.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051269.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Sebastes umbrosus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4402
                     /organism="Sebastes umbrosus"
                     /mol_type="mRNA"
                     /isolate="fSebUmb1"
                     /db_xref="taxon:72105"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="muscle"
                     /dev_stage="adult"
                     /country="USA: California coast"
                     /lat_lon="33.599833 N 118.265167 W"
                     /collection_date="05-Oct-2017"
                     /collected_by="University of Washington"
     gene            1..4402
                     /gene="LOC119475566"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins, and 96% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:119475566"
     CDS             266..1825
                     /gene="LOC119475566"
                     /codon_start=1
                     /product="solute carrier family 45 member 3"
                     /protein_id="XP_037604364.1"
                     /db_xref="GeneID:119475566"
                     /translation="
MNKPKMQVEGTKTKDLVWKLFLVNIVSCSLEVCMAAVTVYIPPLLLQTGMEERYMTMVLGVAPVLGLISIPVIGSASDSWEGRFGRRRPFIWMLSLGVLLGLQVMPRAGRLAVLMSPQHPHRLEALLQAGAVCLIEFCVNACLTVLLALLSDLFPGEEEIRRAFSVYSMMTSLGGCLGFLLPAVDWSQAPVATYLGGQESFIYTLLTFLFLSCLLPTVFIQEETGTRGGERKTVAPLRSWSSRCCSRPQCSIVTLGRCVSACTSVFPRSYAACTRVPTVIWRLFVAETCSWMALMSVVIFFADFMGEGLYKGVPSAEPQSQGRKHYDEGVRMASLGLFLQCVVSLLCSVLMDSWVALLGARVVYSSSAALLVFTTAFMSVSNSVVTVTVMAAVTGYTLSVLQIVPYTLLCLYHSDSQAFFTSSKPRHRQLSGNTGEPQVSVFAGGGTKGEAVSQRGICFDMAIVDSAYLLSQLVPAMCLGSIVQLANSSRAYMASACCFSLLALFCSTRVVYSHAELQR"
     misc_feature    323..1783
                     /gene="LOC119475566"
                     /note="Major Facilitator Superfamily; Region: MFS;
                     cl28910"
                     /db_xref="CDD:452895"
     misc_feature    order(353..358,365..370,377..379,473..475,680..685,
                     689..697,704..706,767..769,776..781,788..790,1124..1126,
                     1133..1138,1145..1153,1160..1162,1295..1297,1307..1309,
                     1454..1459,1469..1471,1481..1483,1646..1648,1655..1660,
                     1667..1672,1679..1681)
                     /gene="LOC119475566"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]; other site"
                     /db_xref="CDD:349949"
ORIGIN      
tatgatttcatgaatgaaagttgcttttttttttcatcttttaggcctaatatatttataccgttctgttctctgaagacgtcgcgtctggtacaatgccacagagcgaccagctgacaaccacccaaagcccctctggaaagtcctttttactgatcagctgtgttaatatgggccgattattccgcataaggactaaacactgtgaacagcaaagatattacattcaaacaagactgtaaaggaacgcctaaagaaggcaaaaatgaataaaccaaagatgcaggtggaaggtaccaaaacaaaagacctggtgtggaagttgtttctggtgaacattgtatcgtgcagtctggaggtgtgcatggctgcagtgaccgtctacatcccacctctgctgctgcagaccggcatggaggaacgctacatgaccatggtgctcggggtggctccagtcctgggtttgatcagtatacccgtgatcggctcagctagcgattcgtgggagggtcgctttggtcgtcgccggccgtttatctggatgctcagtcttggagttttactgggcctgcaggtgatgcctcgggccgggcgcctggcggtgctaatgtccccacagcaccctcaccggctggaagctcttctgcaggccggagctgtgtgtctcatagagttctgtgtgaacgcctgtctaaccgtgctgttggccctgctgtcggacctgttccctggggaggaggagatccgcagagcgttctcagtatattccatgatgacgagtctggggggatgcctggggttcctgctccctgccgtggactggagccaagcacccgtagcgacatacctgggaggccaagagtccttcatctacaccctgctcaccttcctcttcctcagctgccttctccccaccgtcttcatccaggaggagacgggaaccagaggaggagagaggaagacagtcgcccctttgagaagctggagcagcagatgctgctctcggcctcagtgttccatcgtcacactcggtcgatgtgtgtcagcgtgtacgtcagtgttccctcgctcctacgcagcgtgcacgcgtgtgccgacggtcatatggcgactgtttgtggcggagacgtgcagctggatggcgctgatgagcgtcgtgatcttctttgctgactttatgggggaggggttgtacaaaggagtgccgagcgcagagccgcagtcacagggaagaaaacattacgatgaaggtgtgcgtatggccagcctgggtctcttcctgcagtgcgtggtatcgctgctgtgctctgtgctgatggactcctgggttgctctgctgggagccagggtggtgtacagcagcagtgcagctctgctggtgtttaccaccgccttcatgagcgtctcaaacagcgtggtaacggtcaccgtcatggcggccgtgacaggatacacactctccgtccttcagatcgtgccgtacaccctgctgtgtctctatcactcagacagtcaggctttcttcacatcatccaagcccagacatcgacagctcagcggcaacaccggggaaccccaagtttcagtgtttgcgggtggaggcaccaaaggcgaagcagtctcacagagagggatctgttttgacatggcgatagtggacagcgcctaccttctctcacagttggtgccggcaatgtgcctcggctccatagtgcagctggctaacagttcgagggcttacatggcctcggcctgctgcttcagcctgctggcgcttttttgctctaccagggtcgtctacagccacgctgagctccaacgctgaccgtctctccatcaaacacaccagcagaggatggacagtaacctctgatgctgaactagttacagttactgcgttcttcttcttctcaggaacatgttgtgacatacatagagcaaaccttttaagaattgtgttgtattgtcatcgcaaggtcaagacacatgccatgtgtcaagtcagcacattctcaaggccagtgatgagatgtggatgaatgagctgctttcatcgcagtcaaaactatttattgtgggtaaaatgaagctatgttatgttaattgagtttctatgttttgggtttgttttgatgttgggttcaaggatgatgtgatttgattttggtggtcaaaggtcaaggtcactgtgacctcacatccgtcccattctctcaggaacgccttgagtgaatgtcttcaaatttggcacaaacagacacttagacccggtaagggtcaaggtcaccgtgacctcacgtccgtcccattctggtgaaatctcaggaacgccttgagctaatttcttcaaatttggcagaaacttcctcttggaatcaaggatgaactcattagattttggtagtcaaaggtcaaggtcactgtgaccttacatccgtctcattctcatgaaagcattatctcaggaacactttgagcaaatgtcttcaaatttggtacaaacttccacttcgactcaaggttgaactgattaggtcaaaggtcactctgacctcacgtccgtcccattctagtgacatctcaggaacgccttcagcgaattccttcaaattttgcaccaacatccacttcaacaaggatgaacttattatattttgtttgatgaaggtcaaaggtcaccgtgactttacgactgtcccattctcgtgatattttgggatcgccttgatcaaatttcctcgaatttggcgtaaacatccatttcatcaaggtgaagtgattaaatttttttggttaaaggtcaaggtcaccatgacctcacactcgtcccattctcatgaaatcttgggaacgccttgagcaattttcctcaaatggcacaaatatccacttagactcaaggttgaagggattagatttaggtagtcaaaggtcaaaggtcaaaggtcattgtgaaggtcatcgtcccaatcttgtgatatctcaggagcactttgagcaaatttcttcaagtttgaagtgattcgattttgttgattaaacgtcaaaggtcaagaatccatatgctaattatgatgttttgcacaaaagtccaacatgatgaaatgatgaagtgacgacattttggacagacatggatgtaaactgcaacttcactggttggtggagccaaacagcctcgaggcggtaattctagttttttttttataatcttgtacgggtaatgaaagggagcgacatcctgctgtgtactgttgctaagaaaccacagtggagtcttgacactcattgtgtgctgcattatgctgcagtcttctcgtccatatgctctgtttggcttctgtggaggatcagtaataataactgaatgacaccgattacccaagagaaatcaacctttatagcaaaacaaagcttcctttacagcacaagagtcccacttgtttggagctatactggttcttcctgatctccacaccctgtcctactattgtgctgtaccacttctggcaacatgttaacatctcagggacaatattgactttacaaagtttacagtttgtctgtcagatgttcttaaccttcctgttgtcctcgggtcaaatttgacccgtttacaaacttcatcatattacgaatatgggtttctttcatctgattaacatggatgaaagtaattcataatttctggggggttttctatgatcaaaaaggaggtataatttcatgtaaatgaagtttattgaccataaattacagaaaaaagtgtaaaacttgtggtaatgagttggaatgaagtttgctgaaaaggtgtcattatgtgctgccattgaaaatgttttatattataatatttataatattctgactaaactttgacatatacccatctgtgataatccatcaatattatgttccactgatagtcaaaataattaaaaatttcggctttttttactcaaacattaggtgtaatttaatggaaataatatttattaaccataaattccccccaaaaagtataaatcatgtggtaatgagttggaacgaggttggctaaaaaggtgtaacacagaattaggtggtaatttatagtttatggtttataaactgtcaaaccagaccaaaatttgcacggtcgacgggaagacaataggagggttaactagaataagtctacaggacgctcaaatagtgctctgatggttcatttaaggtgcttggcaatggtgcaactgaaagatatccgcaagctagcgtcgtcctaaactacaccgcagaagacgttattctgttcattcatggtgtctccgctgactcactcagttggcatagattgtttgaaatgtgtagattagttattagaataatatttttgcacttcattcagatataagcttgc
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]