2024-04-18 23:36:38, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_037728706 2726 bp mRNA linear PRI 20-NOV-2020 DEFINITION PREDICTED: Cebus imitator protein argonaute-3 (LOC108284369), transcript variant X4, mRNA. ACCESSION XM_037728706 VERSION XM_037728706.1 DBLINK BioProject: PRJNA328123 KEYWORDS RefSeq. SOURCE Cebus imitator (Panamanian white-faced capuchin) ORGANISM Cebus imitator Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Cebinae; Cebus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_016107592.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cebus imitator Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2726 /organism="Cebus imitator" /mol_type="mRNA" /isolate="Cc_AM_T3" /db_xref="taxon:2715852" /chromosome="Unknown" /sex="male" /dev_stage="adult" /country="Costa Rica" gene 1..2726 /gene="LOC108284369" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 35 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns" /db_xref="GeneID:108284369" CDS 124..2004 /gene="LOC108284369" /codon_start=1 /product="protein argonaute-3 isoform X2" /protein_id="XP_037584634.1" /db_xref="GeneID:108284369" /translation="
MCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
misc_feature 124..465 /gene="LOC108284369" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(259..261,304..306,346..348,358..360,412..414, 433..435,439..441) /gene="LOC108284369" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 598..1875 /gene="LOC108284369" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1009..1011,1021..1023,1057..1068,1075..1077, 1099..1101,1108..1110,1120..1122,1132..1134) /gene="LOC108284369" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1213..1215,1219..1221,1429..1431,1843..1845) /gene="LOC108284369" /note="active site" /db_xref="CDD:240015" ORIGIN
gtttcagtctacatgttacttccttgagaagcagtgtttgacacccttctccccccatccagccatcccccaaatctgatttctgctactgccttctacaaagcacaacctgtaattcagttcatgtgtgaagttcttgatattcataatattgatgagcaaccaagacctctgactgattctcatcgggtaaaattcaccaaagagataaaaggtttgaaggttgaagtgactcattgtggaacaatgagacggaaataccgtgtttgtaatgtaacaaggaggcctgccagtcatcaaacctttcctttacagttggaaaatggccaaactgtggagagaacagtagcacagtattttagagaaaagtatactcttcagctgaagtacccgcatcttccttgtctgcaagttgggcaggagcagaaacatacctacctgccgctagaagtctgcaatattgtggcagggcaacgatgtatcaagaagctcacagacaatcagacttccactatgatcaaggcaacagcaagatctgcaccagatagacaagaggaaattagcagattggtaagaagtgcaaattatgaaacggatccatttgtccaggagtttcaatttaaagttcgggatgaaatggctcatgtaactggacgtgtacttccagcacctatgctccagtatggaggacggaatcggacagttgcaacaccgagccatggagtatgggacatgcgagggaaacagttccacacaggagttgaaatcaaaatgtgggctatcgcttgttttgccacacagaggcagtgcagagaagaaatattgaagggtttcacagaccagctgcgtaagatttctaaggatgcagggatgcccatccagggccagccatgcttctgcaaatatgcacagggggcagacagcgtagagcccatgttccggcatctcaagaacacatattctggcctacagcttattatcgtcatcctgccagggaagacaccagtgtatgcggaagtgaaacgtgtaggagacacacttttgggtatggctacacaatgtgttcaagtcaagaatgtaataaaaacatctcctcaaactctctcaaacttgtgcctaaagataaatgttaaacttggagggatcaataatattcttgtacctcatcaaagaccttctgtgttccagcaaccagtgatctttttgggagccgatgtcactcatccacctgctggtgatgggaagaagccttctattgctgctgttgtaggtagtatggatgcccacccaagcagatactgtgccacagtaagagttcagagaccccgacaggagatcatccaggacttggcctccatggtccgggaacttctcattcagttttataagtcaactcggttcaagcctactcgtatcatcttttatcgggatggtgtttcagaggggcagtttaggcaggtattatattatgaactactagcaattcgagaagcctgcatcagtttggagaaagactatcaacctggaataacctacattgtagttcagaagagacatcatactcgattattttgtgctgataggacagaaagggttggaagaagtggcaatatcccagctggaacaacagttgatacagacattacacacccatatgagtttgatttttatctctgtagccatgctggaatacagggtaccagtcgtccttcacactatcatgttttatgggatgataactgctttactgcagatgaacttcagctgctaacttaccagctctgccacacttacgtacgctgtacacgatctgtttctatacctgcaccagcgtattatgctcacctggtagcatttagagccagatatcatcttgtggacaaagaacatgacagtgctgaaggaagtcacgtttcaggacagagcaatgggcgagatccacaagctcttgccaaggctgtacagattcaccaagataccttacgcacaatgtactttgcttaaatagtccaagtatattctctgagaggaagtactgaaagatgaattgacatacaacgtatgtttccagtggagtcaattgagtaaggacacctccagccatacagaaaccaacactgtgtgggggccaaggtctgatccttatgttaatacaaggaagattgtttacttcatcaaggaacacagcatcattatgcaatatgaaaccagccaactgctttttgtgcggtctcctgtaggaagtatcgcaattgttctgttttcatttcttgtagtctaaccctttttaatgcctttacctcaagttgcttggcagcacaactatctttgcaaaaaaaaaaaaagtaaggaaaagtaaatgatggtttaaaaaatacacaccttcatgaataatcaaagtgatttttcaaaattatgtgtgcaaaaaattaatgtgcattcatatattcttgtaaaaggtgtctgtgtattttaaaaatatatacatgcatacttcatatgcatatatatctagatctggattaataatagatatatatgtctgtgtatatattttatagttcattccattggggagctttctttcccttttattttacccccactactacctttatttctcttatttcccttgccttcatcacctacacttttttcctaatgctaccagtgacattcaaatgttcacatatctggttcctttgaatgtaaaatatggcaaacta
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]