2024-04-19 20:42:14, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_037728705 6937 bp mRNA linear PRI 20-NOV-2020 DEFINITION PREDICTED: Cebus imitator argonaute RISC component 1 (AGO1), transcript variant X4, mRNA. ACCESSION XM_037728705 VERSION XM_037728705.1 DBLINK BioProject: PRJNA328123 KEYWORDS RefSeq. SOURCE Cebus imitator (Panamanian white-faced capuchin) ORGANISM Cebus imitator Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Cebinae; Cebus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_016107592.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cebus imitator Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6937 /organism="Cebus imitator" /mol_type="mRNA" /isolate="Cc_AM_T3" /db_xref="taxon:2715852" /chromosome="Unknown" /sex="male" /dev_stage="adult" /country="Costa Rica" gene 1..6937 /gene="AGO1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 197 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns" /db_xref="GeneID:108284371" CDS 117..2246 /gene="AGO1" /codon_start=1 /product="protein argonaute-1 isoform X4" /protein_id="XP_037584633.1" /db_xref="GeneID:108284371" /translation="
MPHRVGACARGTSSLPVPARYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRVSRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 183..335 /gene="AGO1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 336..698 /gene="AGO1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(492..494,537..539,579..581,591..593,645..647, 666..668,672..674) /gene="AGO1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 831..2117 /gene="AGO1" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1251..1253,1263..1265,1299..1310,1317..1319, 1341..1343,1350..1352,1362..1364,1374..1376) /gene="AGO1" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1455..1457,1461..1463,1671..1673,2085..2087) /gene="AGO1" /note="active site" /db_xref="CDD:240015" ORIGIN
gctgcatgaagccctggtcagtggccagatccctgttcccttggagtctgtgcaagccctggatgtggccatgaggcacctggcatccatgaggccagggctcctccgtgcccaggatgcctcacagggtgggggcctgtgcccgagggaccagttctctgcctgtccctgccaggtacacccctgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcagccactgccttctataaggcacagccagtgattgagttcatgtgtgaggtgctggacatcaggaacatagatgagcagcccaagcccctcacggactctcagcgtgttcgcttcaccaaggagatcaagggcctgaaggtggaagtgacccactgtggacagatgaagaggaaataccgtgtgtgtaacgttacccgtcgccctgctagccatcagacattccccttacagctggagagtggacagactgtggagtgcacagtggcacagtatttcaagcagaaatataacctgcagctcaagtatccccatctgccctgcctacaagttggccaggaacaaaagcatacctaccttcccctagaggtctgtaacattgtggctgggcagcgctgtattaaaaagctgactgacaaccagacctcgaccatgataaaggccacagctagatccgctccagacagacaggaggagatcagtcgcctgatgaagaatgccagctacaacttagatccctacatccaggaatttgggatcaaagtgaaggatgacatgacggaggtgacggggcgagtgctgccggcgcccatcttgcagtacggcggccgggtgagcaggaaccgggccattgccacacccaatcagggtgtctgggacatgcgggggaaacagttctacaatgggattgagatcaaagtctgggccatcgcctgcttcgcaccccaaaaacagtgtcgagaagaggtgctcaagaacttcacagaccagctgcggaagatttccaaggatgcggggatgcctatccagggtcagccttgtttctgcaaatatgcacagggggcagacagcgtggagcctatgttccggcatctcaagaacacctactcagggctgcagctcattatcgtcatcctgccagggaagacgccagtgtatgctgaggtgaaacgtgttggagatacgctcttgggaatggctacccagtgtgtgcaggtgaagaacgtggtcaagacctcacctcagactctgtccaacctctgcctcaagatcaatgtcaaacttggtggcattaacaacatcctagtcccacaccagcgctctgccgtttttcaacagccagtgatattcctgggagcagatgttacacatcccccagcaggggatgggaaaaagccttctatcacagcagtggtaggcagtatggatgcccaccccagccgatactgtgctactgtgcgggtgcagcgaccacggcaagagattattgaagacttgtcctacatggtgcgtgagctcctcatccaattctacaagtccacccgcttcaagcctacccgcatcatcttctaccgggatggggtccccgaaggccagctaccccagatactccactatgagctactggccattcgtgatgcctgcatcaaactggaaaaggactatcagcctgggatcacttatattgtggtgcagaaacgccatcacacccgccttttttgtgctgacaagaatgagcgaattgggaagagtggtaacattccagctgggaccacagtggacaccaacatcacccacccatttgagtttgacttctatctgtgcagccacgcaggcatccagggcaccagccgaccatcccattactatgtcctttgggatgacaaccgtttcacagcagatgagctccagatcctgacataccagctgtgccacacttatgtacgatgcacacgctctgtctctatcccagcacctgcctactatgcccgactggtggctttccgggcacgataccacctggtggacaaggagcatgacagtggagaggggagccacatatcggggcagagcaatgggcgggacccccaggctctggccaaagccgtgcaggttcaccaggatactctgcgcaccatgtacttcgcttgaaggcagaacgctgttacctcactggatagaagaaagctttccaagccccaggaactgtgccacccaaatccagaggaagcaaggaggagggaggtgggtggggtagggaagagtgtaggaggccttgtttccctctatagaggtggtgtaagagtggggaacagggccagcaagacagaccaccagccagaaatctctgatatcaacctcatgtcccccacccctcaccccatcttgtcacatctggccctgaccccactggaccaaaaggggcagcactggtgcccaccatacacacaggtgtctcatgtgactcacagtgctaaagactcatgcttgacagcttggtaaggtcgactctgtagccctgcagacaaaagctggttaggtttgggtttgatactttagatgggaaagtgaggggcttgagaaagtgggtgggaggagggaaggattttttaggagccttaatcagaaaaggactagatttgtttaagaagaaaaatgaaaccagacccagatcaatattttaggatactagatgttttaatgggttcagaatccagtttgtaggaagattttttaatggttttggttgctcctcccccagctgccactccctttccccttattcctttctgtccacattttctaccccaccttacttctcctccctgacagacatccaatgcccctaataatacttaaggcactatggcacttagctttgaagtgacacgaccctgtcttccttccgcccgctggtgggtaaccagtgccttccctgtaacggtaatgctgcagaactgcaaccttttgtacctttctttggggaatggggtgggggtgggagaggaggtagatggggaagaaataccccagacccaacaaacctccagccagaaagccagctattttgcatttgaaggaattgacttcctcattcattgagctttttaaaagatcacaacctcaagatggttaaaatccattgacatttgcactttcaaacatgacaagtctcggagctgctgagatgactggcccctggcctttccacttatgcctccttttctccttgttcctcctacctcccaccccgcccaggtctggagttactttcatagcatttttcactgttggctttttttctcccctgatggtcaagtatcttatgtttcaatatttcttaactggggtgtcttataacaaaaaactcttaggtctaaaatgagaaaaaagagagaaaacaaaatgttatttttataccataacttgagtctattgccaaaatttggaaatccttcccatgcctgatgaatttatatcccggaaacattgagccatcagaaggaactgtgtacctgatttgtcctctgacctggctaggtagggggtggttattgccccaagatggggtccaggctccatccttcctctgtgcagataatacctttttcttgctatagcctccctcctctgcactgtcttgcactcttacttgcaagtgcatctttttccttcctctggactgtcctctgaccttttggcccatcctagattccagtgtgtcttgtggacaggctggggaattttgctgctccctattgcttctgtttacacaaatgaatttttcctggttccccactagggcatgtgagtgagtggcatgggcttttttgtttgtttgtttttgttttttgtcttcagacatggggtttggctgtcttgcaggactggagaagaaggtggttctagcttggtctctgctggccttgaagcaagccccctctccccgcctttttccttgactgttcattttttttcctgccccactgcttgggatggggagttgcaccttcagtgtggaatttcctctgtttgaggaggctgggcttggatctatcttgatctggcgatgaagccatgattactttagacctagcccaggcttggaggccagctggaggaaggaggatctaaatcctggcctatagagttagaactaccgtttcctctcctcagcggccctgctatgacccggatttgctatgcaaaacaatctatcccaggttctgttctggttggctacattgttcagcaactcaaaaaacgtagcacaaacattcattatggagaaagcatcaggactgttgagtaactcctcctttacttttttcctgctggctacagcatggggtgccctatgggcacaagcccagctgaagaacagaatggagggctctgggaggagacaactcactggagagcctacattccttacacaagtgcctaaagagagtgatgctaacactccatctgccctgtccattgccttcatatatagtctacttcgtgttctgtcaccctttgaagaggggagctctcctgggacaatgggctctgcatgttctcttcttgggtacattttggggctaggatcagggcactattcctggagggtccagccattcaccagcatttgcaaatgtccatagggagcaggtagcagcctctactcccagcaacaagtttgtgttctctccttttctctctttgcctcactctctccagttggtttccagctggggcttgaaatgcatgtttagccctttggcattgaatatgccattcaagaaataaaaagcaagagaagcagctatgggcaatgacaagaaaatgacttcttactctgattttttaaaaaaaataatttttgagacttgaaaaatactcctgaccttgaggattattcttgtttgaaaggtggtgcatgcagatggagaagtggtgttggcagcaagctttggatcatggatttggtttaagtggtgcttcttacccagtcttcaaagaagtgcttgggggacccccagcctcatcctcttagacaagtgtcttgctccctttgtaccttcctctcttttcctcgcctctctttccccggcttcctttccctttttgctattcactctgcttgcttgctggctggcctgcctgcctgcctgcctgcctgcctgcctgcctgcctgcctacctatgtgatgatgaaatctctgcatggctgcaatgactccactgttagctggcaggtcaggcttagctccttgactgcacaagaccaagactctgttccctaagcccagagatatccacctgggctggactgccctcaagcttatgctagagcagagcaactggcctgcccaacttgtgtgaaatcaggaggttctggcattttccacacctgtccactccttggagctggtttctctcattgctttctctagatctggttctttttctctacctgggcctaccttttctgagattgtcttagggttgagctacttgggtatcctgggtttgagtgttaggggatggacataagggaaaaagagaatgatgagaagagaatggagagaatttgaataaaaggtgggaaaggagagcactgttctttgactgtttatccactccagcctgatccattagggattgaggtgctaccgaaggcctccaggaataagcctggggctattgttgctgggaacttaggcttagcacaaagctgaagaaaaaggtacctagaagtttgaaacttgcccaaaaagctcctaatgcccacctgctagatagcttctctgtggcctcctatttagctaagcagcaatgttcttggatatttttctttttctgttcagaattttgtgaataaggccagcattcaagatgggcagccaagggcacactgactgttagctggcccataggatatctgtaaggctggtgggacgattttggacctggaatcatgtgtaacaaacaaggatggatgtttcttccccttcagggtagaaaagtcatctcaaactagccaaaaggcagttttggaaactacattgggggaaattatttttatttatatatggggcctaggccaatccaggatggtagctagaataccttccttcttaaaatctgatcatggcagggatatgtagggcactttttactatttggccttctaagcagattgggaaggaggtattttctggttttctctttcccctgacttacaggtcttgccttctccctggacagggagagaggctgggttggtgctctccccttactctactcaaccctctggctgctgtttgggcgtccaagaaagggaggggaaggaatgagctaaaaacaaaacagaatgaggtgggaaagggagatttccttctctacagaggaaaataggaaaccctccaagaattgtgcaagtaaagacagtttgtcgaatgcactgagtcccttggtatagtagcaataaggaaaaatgaaattacttccctgtgcacacagtccagcctaattggtatgtgatgttgcactcagcagccatgtggtgggcatgtgtgacgacctatgggtttcactttagtttctaaactttttatccctctcaagtccagcttggatggggaaatgtctctggatccccacagctgtgtacttgtttgcatttgtttccctttgagactgtgtttgtgtcctgctttgagctgtaccttgtccagtccattgtgaaattaccccagcagttgtaatgtacagttccttctgaagcaagcaacagcagcagcagcagcacaattctgtgttttataaagacaacagtggcttctatttctaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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