2024-04-30 03:32:50, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_037600962 2872 bp mRNA linear PLN 13-NOV-2020 DEFINITION PREDICTED: Triticum dicoccoides ubiquitin-like-specific protease 1D (LOC119327889), transcript variant X1, mRNA. ACCESSION XM_037600962 VERSION XM_037600962.1 DBLINK BioProject: PRJNA531190 KEYWORDS RefSeq. SOURCE Triticum dicoccoides ORGANISM Triticum dicoccoides Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_041392.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Triticum dicoccoides Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2872 /organism="Triticum dicoccoides" /mol_type="mRNA" /isolate="Atlit2015" /db_xref="taxon:85692" /chromosome="7A" /tissue_type="leaf" /dev_stage="vegetative" /ecotype="Zavitan" /country="Israel: Aaron Aaronsohn experimental farm Atlit" gene 1..2872 /gene="LOC119327889" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 43 samples with support for all annotated introns" /db_xref="GeneID:119327889" CDS 5..2263 /gene="LOC119327889" /codon_start=1 /product="ubiquitin-like-specific protease 1D isoform X1" /protein_id="XP_037456859.1" /db_xref="GeneID:119327889" /translation="
MPEAPAASPVDFSAASSFSSPTPTSPRPRPLGEPRRAAVNAMATASSEPLPSGEEGDEDAGARIDDDLRGMSDQALKERFKRLQDGLNKFPGVLPDGGKKYRRSLRAVRGELDRRTRLASDSASLRPRPRPPRPQGRLGEPDGNRGERMIQSSCAEPSGLSSKCNENHGVTKSDFLSAFEVDDEAGIDVEITSICPGKTKTPVENKGKSYEVSESCKTNAQPMPPKVLCIDNSIDVENMSSDDDFKDNGDIRIRENASTPSRKRKGDDSVNFSMRLRPRKAQEVVLLDADAHHSESAEKPTTKRDAMKIYYPSSEHSNSIELSHDDIKCLEPESLLSSTIMNFYIMYLQGPMSSISTQRGKYHIFNTYFFKKLEALKSKADKPSYFLNLRRWWKGIDIFQKPYILFPVHADTHWSLVIICMPAKEDQSGPIILHLDSLNFHNSRLIFSVVERFLKQEWNYLKENGSLAECPIRETVWKKLPRKIEKKPIAVPQQENEFDCGLFVLYYMQRFIEEAPERLHKKDLSMFGKTWFQPEEASALRKKMKTLLHQLFEEADPSNDSTSEQTACQSLLEVKPANNVMELATSEHPLEVSSAEVIPTSEHLLEVGSAEMTPMSEHPLQVSSAEMSPTQEHPLVGSSGEMVPAQEHPLVGSLAEMEPTQEHPLVGNLAEMEPKPLVGSSAEMAPTQEHTFVGSSAEMAPTQEHPLVRSSAEMEPTQEHPMVGSSAEITSQKPLEGTSTRPTSFEHPLECS"
misc_feature <707..1576 /gene="LOC119327889" /note="Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]; Region: ULP1; COG5160" /db_xref="CDD:227489" ORIGIN
caatatgccagaggccccggctgccagccccgtcgacttctccgccgcctcctctttctcttccccaaccccaacttcccctcgaccccgccccctcggcgagccgcgccgcgccgcggtgaatgcgatggccacggcttcgtcggagccgctccccagcggcgaggagggggacgaggatgcgggggcgaggatcgatgacgaccttcgcggcatgtcggaccaggcgctgaaggagaggttcaaacgcctacaggacgggctcaacaaattccccggcgtcctcccggacggtgggaagaagtaccgccgctcgctccgcgccgtccgcggcgagctcgaccgccgcactcgcttggcctcggactcggcctctctccggccacggccgcggccaccgcgtccgcaaggccgcctaggcgagccggatggcaatagaggtgaacggatgatccagtcaagttgtgcagaaccgtctggtttgtctagtaaatgcaatgaaaatcatggagtaaccaaatctgatttcctttccgcatttgaggtggatgatgaggcaggcatcgatgtggagataacaagtatatgccctggcaagactaaaacgccagtagaaaataaagggaagtcgtatgaagtgagtgaatcttgcaaaaccaatgcacaaccaatgcctcccaaagtattatgtatcgacaactcaatcgacgtggaaaatatgtcttctgacgatgacttcaaggataacggcgatattaggatacgtgaaaatgcttccacaccttctcggaaaaggaaaggagatgactcagttaacttctcaatgcgattgagaccaagaaaggctcaagaggtggttctactcgatgcagatgcacaccattcagaatctgcagagaagccaaccactaaacgggatgcaatgaagatatattatccttcaagcgaacactcaaattctattgagctttctcatgatgacataaaatgccttgagcctgaatcgttactttcctcaactataatgaacttctacattatgtacctgcaaggaccaatgtcgtcgattagtacacaaagaggcaagtatcacattttcaatacatacttcttcaagaaacttgaagccctaaaatcaaaggcagacaagccttcttacttcttaaacctgagaagatggtggaaaggcatagatatatttcaaaagccatatatattatttcctgtgcatgcagatactcattggagcctggtgattatatgcatgccagcaaaggaagatcaatcaggccccattatacttcatttggattcactgaatttccataacagcagattgattttcagtgttgttgagagattcttaaaacaagaatggaattacctgaaggaaaatgggtctttagcagaatgtcctatacgagaaacagtgtggaagaaacttcctcgtaaaattgagaagaaaccaattgcggttccccagcaggaaaatgaatttgactgtggcctctttgttctgtactatatgcagcggttcatcgaggaggcacctgaaaggcttcacaagaaagacctttctatgtttggcaaaacatggtttcaacctgaagaggcttctgcattgcgaaagaaaatgaagaccctgcttcatcagttgtttgaggaagcggatcccagtaacgacagtacatcggagcagacagcgtgtcagtcgcttttggaagttaagcctgcaaacaacgtgatggagctggcaacgtcagaacaccctttggaagtcagttcagctgaggtgataccaacgtcggaacacctgctggaagtcggttctgctgagatgacaccaatgtctgaacaccctttgcaagtcagttctgctgagatgtcaccaacgcaagaacatcctttggtgggcagttctggtgagatggtaccagcgcaagaacatcctttggtgggcagtttggctgagatggaaccaacacaagaacatcctttggtgggcaatttggctgagatggaaccaaagcctttggtgggcagttcggctgagatggcaccaacgcaagaacatacctttgtgggcagttcggctgagatggcaccaacgcaagaacatcctttggtgcgcagttcggccgagatggaaccaacgcaagaacatcccatggtgggcagttcggccgagattacgtcgcagaaacctttggaaggtacttcgacccgaccaactagttttgagcaccctttggaatgcagctgattgatgttaccacctttggagtgacttacgttacccgtagaaaccgaaaccggctcggaattgtattatagatgggaaggtgttgtagcctgcatctgtaggcgacttcgagggaggggtggtgttgcatgactgaacgttgcagttaatgtatccgcgggaacttccgtgtatataaaatatcagtaggagaactggtgggtgtacgagtcgctcagggtgaacttcatctgttctttagttatttataggctaggctggaagaggtcaataaaatctcaggctttgattagacgatgttgcacaagccggttggcgagttgcctcctgaagccttaaaagagttgatctacacggttgctcctagttcatggctgcagtaggactagttacaaggcaacacgctcgcctgctcgtctcctccctcaaccagtttgatccaacacgaccaagaatacaccggcgattcgcctcctcccagccattcgtgccgactgatgtggcgaggtgagttgaggttaattggatttggggattttaatcagtggccacgcacgcacacaaatttgtggcataagaattcactcctcagatttggggattttaata
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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