2024-04-20 01:45:23, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_037437191 4811 bp mRNA linear INV 12-NOV-2020 DEFINITION PREDICTED: Manduca sexta myosin-2 heavy chain-like (LOC119188930), partial mRNA. ACCESSION XM_037437191 VERSION XM_037437191.1 DBLINK BioProject: PRJNA674349 KEYWORDS RefSeq; includes ab initio. SOURCE Manduca sexta (tobacco hornworm) ORGANISM Manduca sexta Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini; Manduca. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051124.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Manduca sexta Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## COMPLETENESS: incomplete on the 3' end. FEATURES Location/Qualifiers source 1..4811 /organism="Manduca sexta" /mol_type="mRNA" /isolate="Smith_Timp_Sample1" /isolation_source="Purchased from Carolina Biological then incubated and grown in the lab" /db_xref="taxon:7130" /chromosome="10" /tissue_type="body, legs, wings, head" /country="USA: Boston" /collection_date="Sep-2018" gene 1..>4811 /gene="LOC119188930" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:119188930" CDS 63..>4811 /gene="LOC119188930" /codon_start=1 /product="myosin-2 heavy chain-like" /protein_id="XP_037293088.1" /db_xref="GeneID:119188930" /translation="
MNNWRLFIIAFVAILQPIASFRECNLVNGRDRCCDRQLLQDGRQNTHGIHQFKTFIKEEYSLQSVNNSPYVQHHDAKEYDSKVIFPSTQSFHEFRGRHRTLQSLRETDSDADSHRLKSRISRELREEYQRQIRDFELPKNQFELAHERLYGIIKSSEKRNRHAKKQLDSRRIWDVVDSQHARNEESRPNRRSKDEVDSRRTMETLASGRSRDEVDSRRSMKTLANRRSRDEVDNRRSMETLANRRSRDEVDSRRVRNEVNSRRVENEVDSRRTMDTLANRRSRDEVDSRRSMETLANRRSREKQDNHRAMETLVDRHSRHEVDSRRSMETLANRRSRDEVDSRRSMETLTNRRSREEVDNRRSMETGNRRYRDEVDSRRSMETLTNRRSRDEVDNRRSMETGNRRSRDEVDSRRSRDEVDSRRSMETLANRRSRDEVNNRRSMETLENRRSRDEVDSRRIRNEVNSRRSMQTLANRRSRDDVDNRRSMETGNRRSRDEVDSRRSRDEVDSRRSMETLANRRSREKQDNHRAMETLADRHSRDEVDSRRSRDEVDSRRSRDEVDSRRSMETLANRRSRDVVDSRRSIEILAIRGSRNEVESRHAMETLADRRFRDEIDSRRSMETLANRRSRDEVDSRRVRNENNSRRVENEVVSRRAMDTLANRRSRDEVDSRHTMETLANRRSRDEVDSRRSRDEVDSRRSMETLANRRSRDEVNNRRSMETLENRCSRDEVDSRRIRNEVNSRRVENEVNSRRTMESLVNRRSRDEVDSRRTMETLTNRHSRDEVDSRRSMETLANRRSRDEVNNRRSMETLENRRSRDEVDSRRVRNEVDSPRAMETLADRRSRDEVDSRRTMETLTNRHSRDEVDSRRSMETLANRRSRDEVNNRRSMESLVNRRSRDEVDSRRTMETLTNRHSRDEVDSRRSMETLANRRSRDEVNNRRSMETLENRRSRDEVDSRRVRNEVDSPRAMETLADRRSRDEVDSRRTMETLANRRPWDKVDSRRVRNEVDSPRAMETLADRRSRDEVDSRRSMETLASRRFREKRDNRRAMETLADRHSRDEVDSRRSMETLANRRSRGEVDSHRAMETLTNHRSRDDLDSRRAMETLASRRSRDEADSRHVRNEVNSRRVENEVVGRRAMNTLANRRSRDEVDSRRSRDEVDSRRTMESLANRRSRDEVDSRRVRNEVDSPRAMETLADRRSSDEVDSRRSMQTLANRRSSDEVDSRRTMETIASRRFRERRDNRRAMVTLASRRSRDEVDSRRAMETLTNRRSRDDLGSRRAMNTLANRRSRDEVDSRRSRDEVDSRRSMETLANRRYRDEVNNRRSMETLANRRSSNEVDSRRVRNEVDSPRAMETLADRRSSDEVDSRRSMQTLANRRSSDEVDSRRSMQTLANRRSKDEVDSRRERNEVNSRLAMESLASRRSRDDVDSRRSMETLVYRRSRDEVDSRRSRDEVDSRRVRNEVDSPRVMETLADRRSSDEVDSRRSMQTLANRRSKDEVDSRRERNEVNSRLVMESLANRRSKDEVDSRRTMETLASPRSRDEVDSRRTMETLANRRSRDEVDSRRVRNEVDSPA"
misc_feature <441..3041 /gene="LOC119188930" /note="MAEBL; Provisional; Region: PTZ00121" /db_xref="CDD:173412" misc_feature 4134..4607 /gene="LOC119188930" /note="Domain of unknown function (DUF4573); Region: DUF4573; pfam15140" /db_xref="CDD:434493" ORIGIN
tcaggtttacttctaacgataaagcgaacgagaaaatcttacatagagggcacacagttactatgaataactggcgtttatttattattgcgtttgtcgcgatattacaaccgattgcctcttttagagagtgcaatcttgttaatggaagggaccggtgctgtgatcgccaattgcttcaagacggtcgtcaaaatactcatggaatacaccaattcaaaacttttattaaagaagaatacagcttgcaaagcgtaaacaacagcccttacgttcaacaccatgacgcaaaggaatatgattcgaaggtaatctttccatcaactcaatcatttcacgaattccgtggaaggcacagaacattgcagtctctaagggaaactgattcagatgcggacagccatcgtttaaaatctcgaatctctagggaattgagagaagaatatcaaagacaaataagagattttgaacttcctaaaaatcaatttgaattagcgcatgagcgtttatacgggattataaaatcgtcggaaaaaagaaatcgtcacgcaaaaaaacaattagacagccgccgtatctgggatgtagtagacagccaacatgcaagaaatgaagagagccgaccgaaccgtcgctccaaggatgaggtggacagccgccgcaccatggaaacattagcaagcggtcgctccagggatgaggtggacagccgccgctccatgaaaacactagcaaaccgtcgttctagagatgaggtagataaccgccgctctatggaaacgttagcaaaccgtcgctctagggatgaggtggacagccgccgtgtaaggaatgaagttaacagccgccgtgtagaaaatgaagtggacagccgccgcaccatggacacattagcaaaccgtcgctccagggatgaggtggacagccgccgctccatggaaacgttagcaaaccgtcgctctagggaaaagcaggacaatcaccgcgcaatggaaacgttagttgaccgtcactccaggcacgaggtagacagccgccgctccatggaaactttagcaaatcgtcgctccagggatgaggtggacagccgccgctccatggaaacactaacaaaccgtcgttctagagaggaggtagataaccgccgctctatggaaacaggaaaccgtcgctacagggatgaggtagacagccgccgctccatggaaacactaacaaaccgtcgttctagagatgaggtagataatcgccgctctatggaaacaggaaaccgtcgctccagggatgaggtggacagccgccgctccagggatgaggtggacagccgtcgctccatggaaacactagcaaaccgtcgttctagagatgaggtaaataaccgccgctctatggaaacgttagaaaatcgtcgctccagggatgaggtggacagccgccgtataaggaatgaagttaacagccgccgctccatgcaaacattagcaaaccgtcgttctagagatgacgtagataaccgccgctctatggaaacaggaaatcgtcgctccagggatgaggtggacagccgccgctccagggatgaggtggacagccgccgctccatggaaacattagcaaaccgtcgctctagggaaaagcaggacaatcaccgcgcaatggaaacgttagctgaccgtcactccagggatgaagtggacagccgccgctccagggatgaggtggacagccgccgctccagggatgaggtggacagccgccgctccatggaaacattagcaaaccgtcgttccagggatgtggtagacagccgccgttctatagaaatattagcaatccgaggttctagaaatgaggtagaaagccgccatgcaatggaaacgttagctgaccggcgcttcagggacgagatagacagccgccgctccatggaaacattagcaaaccgtcgctccagggatgaggtggacagccgccgtgtaaggaatgaaaataacagccgccgtgtagaaaatgaagtagtcagtcgccgcgccatggacacattagcaaaccgtcgctccagggatgaggtggacagccgccacaccatggaaacattagcaaaccgtcgctctagggatgaggtggacagccgccgctccagggatgaggtggacagccgccgctccatggaaacactagcaaaccgtcgttctagagatgaggtaaataaccgccgctctatggaaacgttagaaaatcgttgctccagggatgaggtggacagccgccgtataaggaatgaagttaacagccgccgtgtagaaaatgaagtaaacagccgccgcacaatggaatcattagtaaaccgtcggtccagggatgaggtggacagccgccgcaccatggaaacattaacaaaccgtcactccagggatgaggtggacagccgccgctccatggaaacactagcaaaccgtcgttctagagatgaggtaaacaaccgccgctctatggaaacgttagaaaaccgtcgctccagggatgaggtggacagccgccgtgtaaggaatgaagtagacagcccccgcgccatggaaacactagctgaccgtcgctccagggatgaggtggacagccgccgcaccatggaaacattaacaaaccgtcactccagggatgaggtggacagccgccgctccatggaaacactagcaaaccgtcgttctagagatgaggtaaacaaccgccgctctatggaatcattagtaaaccgtcggtccagggatgaggtggacagccgccgcaccatggaaacattaacaaaccgtcactccagggatgaggtggacagccgccgctccatggaaacactagcaaaccgtcgttctagagatgaggtaaacaaccgccgctctatggaaacgttagaaaaccgtcgctccagggatgaggtggacagccgccgtgtaaggaatgaagtagacagcccccgcgccatggaaacactagctgaccgtcgctccagggatgaggtggacagccgccgcaccatggaaacattagcaaaccgtcgcccctgggataaggtggacagccgccgtgtaaggaatgaagtagacagcccccgcgccatggaaacactagctgaccgtcgctccagggatgaggtggacagccgtcgctccatggaaacattagcaagccgacgcttcagggaaaagcgggacaatcgccgcgcaatggaaactttagctgaccgtcactccagggacgaggtagacagccgccgctccatggaaacattagcaaaccgtcgctccaggggtgaggtggacagccaccgcgccatggaaacattaacaaaccatcgatccagggatgacttggacagtcgccgcgccatggaaacattagcaagccgtcgctccagggatgaggcggacagccgccatgtaaggaatgaagttaacagccgccgtgtagaaaatgaagtagtcggccgccgcgccatgaacacattagcaaaccgtcgctccagggatgaggtggacagccgtcgctccagggatgaggtggacagccgccgcaccatggaatcattagcaaaccgtcgctccagggatgaggtggacagccgccgtgtaaggaatgaagtagatagcccccgcgccatggaaacactagctgaccgtcgctccagcgatgaggtggacagccgccgctccatgcaaacattagcaaaccgtcgctccagcgatgaggtggacagccgccgcaccatggaaacaatagcaagccgtcgcttcagggaaaggcgggacaatcgccgcgcaatggtaactttagcaagccgtcgctccagggatgaggtggacagccgccgcgccatggaaacattaactaaccgtcgatccagggatgacttgggcagccgccgcgccatgaacacgttagcaaaccgtcgctccagggatgaggtggacagccgtcgctccagggatgaggtggacagccgccgctccatggaaacactagcaaaccgtcgttatagagatgaggtaaataaccgccgctctatggaaacgttagcaaaccgtcgctccagcaatgaggtggatagccgccgtgtaaggaatgaagtagatagcccccgcgccatggaaacactagctgaccgtcgctccagcgatgaggtggacagccgccgctccatgcaaacattagcaaaccgtcgctccagcgatgaggtggacagccgccgctccatgcaaacattagcaaaccgtcgctccaaggatgaggtggacagccgccgtgaaagaaatgaagttaacagccgcctcgccatggaatcattagcaagccgtcgctccagggatgacgtggacagccgccgttccatggaaacattagtttaccgtcgctccagggatgaggtggacagccgtcgctccagggatgaggtggacagccgccgtgtaaggaatgaagtagatagcccccgcgtcatggaaacactagctgaccgtcgctccagcgatgaggtggacagccgccgctccatgcaaacattagcaaaccgtcgctccaaggatgaggtggacagccgccgtgaaagaaatgaagttaacagccgcctcgtcatggaatcattagcaaaccgtcgctccaaggatgaggtggacagccgccgcaccatggaaacattagcaagccctcgttccagggatgaggtggacagccgccgcaccatggaaacattagcaaaccgtcgctccagggatgaggtggacagccgccgtgtaaggaatgaagtagatagccccgcg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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