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2024-04-20 01:45:23, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_037437191            4811 bp    mRNA    linear   INV 12-NOV-2020
DEFINITION  PREDICTED: Manduca sexta myosin-2 heavy chain-like (LOC119188930),
            partial mRNA.
ACCESSION   XM_037437191
VERSION     XM_037437191.1
DBLINK      BioProject: PRJNA674349
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Manduca sexta (tobacco hornworm)
  ORGANISM  Manduca sexta
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata;
            Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini; Manduca.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051124.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Manduca sexta Annotation Release 102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the 3' end.
FEATURES             Location/Qualifiers
     source          1..4811
                     /organism="Manduca sexta"
                     /mol_type="mRNA"
                     /isolate="Smith_Timp_Sample1"
                     /isolation_source="Purchased from Carolina Biological then
                     incubated and grown in the lab"
                     /db_xref="taxon:7130"
                     /chromosome="10"
                     /tissue_type="body, legs, wings, head"
                     /country="USA: Boston"
                     /collection_date="Sep-2018"
     gene            1..>4811
                     /gene="LOC119188930"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 99% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:119188930"
     CDS             63..>4811
                     /gene="LOC119188930"
                     /codon_start=1
                     /product="myosin-2 heavy chain-like"
                     /protein_id="XP_037293088.1"
                     /db_xref="GeneID:119188930"
                     /translation="
MNNWRLFIIAFVAILQPIASFRECNLVNGRDRCCDRQLLQDGRQNTHGIHQFKTFIKEEYSLQSVNNSPYVQHHDAKEYDSKVIFPSTQSFHEFRGRHRTLQSLRETDSDADSHRLKSRISRELREEYQRQIRDFELPKNQFELAHERLYGIIKSSEKRNRHAKKQLDSRRIWDVVDSQHARNEESRPNRRSKDEVDSRRTMETLASGRSRDEVDSRRSMKTLANRRSRDEVDNRRSMETLANRRSRDEVDSRRVRNEVNSRRVENEVDSRRTMDTLANRRSRDEVDSRRSMETLANRRSREKQDNHRAMETLVDRHSRHEVDSRRSMETLANRRSRDEVDSRRSMETLTNRRSREEVDNRRSMETGNRRYRDEVDSRRSMETLTNRRSRDEVDNRRSMETGNRRSRDEVDSRRSRDEVDSRRSMETLANRRSRDEVNNRRSMETLENRRSRDEVDSRRIRNEVNSRRSMQTLANRRSRDDVDNRRSMETGNRRSRDEVDSRRSRDEVDSRRSMETLANRRSREKQDNHRAMETLADRHSRDEVDSRRSRDEVDSRRSRDEVDSRRSMETLANRRSRDVVDSRRSIEILAIRGSRNEVESRHAMETLADRRFRDEIDSRRSMETLANRRSRDEVDSRRVRNENNSRRVENEVVSRRAMDTLANRRSRDEVDSRHTMETLANRRSRDEVDSRRSRDEVDSRRSMETLANRRSRDEVNNRRSMETLENRCSRDEVDSRRIRNEVNSRRVENEVNSRRTMESLVNRRSRDEVDSRRTMETLTNRHSRDEVDSRRSMETLANRRSRDEVNNRRSMETLENRRSRDEVDSRRVRNEVDSPRAMETLADRRSRDEVDSRRTMETLTNRHSRDEVDSRRSMETLANRRSRDEVNNRRSMESLVNRRSRDEVDSRRTMETLTNRHSRDEVDSRRSMETLANRRSRDEVNNRRSMETLENRRSRDEVDSRRVRNEVDSPRAMETLADRRSRDEVDSRRTMETLANRRPWDKVDSRRVRNEVDSPRAMETLADRRSRDEVDSRRSMETLASRRFREKRDNRRAMETLADRHSRDEVDSRRSMETLANRRSRGEVDSHRAMETLTNHRSRDDLDSRRAMETLASRRSRDEADSRHVRNEVNSRRVENEVVGRRAMNTLANRRSRDEVDSRRSRDEVDSRRTMESLANRRSRDEVDSRRVRNEVDSPRAMETLADRRSSDEVDSRRSMQTLANRRSSDEVDSRRTMETIASRRFRERRDNRRAMVTLASRRSRDEVDSRRAMETLTNRRSRDDLGSRRAMNTLANRRSRDEVDSRRSRDEVDSRRSMETLANRRYRDEVNNRRSMETLANRRSSNEVDSRRVRNEVDSPRAMETLADRRSSDEVDSRRSMQTLANRRSSDEVDSRRSMQTLANRRSKDEVDSRRERNEVNSRLAMESLASRRSRDDVDSRRSMETLVYRRSRDEVDSRRSRDEVDSRRVRNEVDSPRVMETLADRRSSDEVDSRRSMQTLANRRSKDEVDSRRERNEVNSRLVMESLANRRSKDEVDSRRTMETLASPRSRDEVDSRRTMETLANRRSRDEVDSRRVRNEVDSPA"
     misc_feature    <441..3041
                     /gene="LOC119188930"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    4134..4607
                     /gene="LOC119188930"
                     /note="Domain of unknown function (DUF4573); Region:
                     DUF4573; pfam15140"
                     /db_xref="CDD:434493"
ORIGIN      
tcaggtttacttctaacgataaagcgaacgagaaaatcttacatagagggcacacagttactatgaataactggcgtttatttattattgcgtttgtcgcgatattacaaccgattgcctcttttagagagtgcaatcttgttaatggaagggaccggtgctgtgatcgccaattgcttcaagacggtcgtcaaaatactcatggaatacaccaattcaaaacttttattaaagaagaatacagcttgcaaagcgtaaacaacagcccttacgttcaacaccatgacgcaaaggaatatgattcgaaggtaatctttccatcaactcaatcatttcacgaattccgtggaaggcacagaacattgcagtctctaagggaaactgattcagatgcggacagccatcgtttaaaatctcgaatctctagggaattgagagaagaatatcaaagacaaataagagattttgaacttcctaaaaatcaatttgaattagcgcatgagcgtttatacgggattataaaatcgtcggaaaaaagaaatcgtcacgcaaaaaaacaattagacagccgccgtatctgggatgtagtagacagccaacatgcaagaaatgaagagagccgaccgaaccgtcgctccaaggatgaggtggacagccgccgcaccatggaaacattagcaagcggtcgctccagggatgaggtggacagccgccgctccatgaaaacactagcaaaccgtcgttctagagatgaggtagataaccgccgctctatggaaacgttagcaaaccgtcgctctagggatgaggtggacagccgccgtgtaaggaatgaagttaacagccgccgtgtagaaaatgaagtggacagccgccgcaccatggacacattagcaaaccgtcgctccagggatgaggtggacagccgccgctccatggaaacgttagcaaaccgtcgctctagggaaaagcaggacaatcaccgcgcaatggaaacgttagttgaccgtcactccaggcacgaggtagacagccgccgctccatggaaactttagcaaatcgtcgctccagggatgaggtggacagccgccgctccatggaaacactaacaaaccgtcgttctagagaggaggtagataaccgccgctctatggaaacaggaaaccgtcgctacagggatgaggtagacagccgccgctccatggaaacactaacaaaccgtcgttctagagatgaggtagataatcgccgctctatggaaacaggaaaccgtcgctccagggatgaggtggacagccgccgctccagggatgaggtggacagccgtcgctccatggaaacactagcaaaccgtcgttctagagatgaggtaaataaccgccgctctatggaaacgttagaaaatcgtcgctccagggatgaggtggacagccgccgtataaggaatgaagttaacagccgccgctccatgcaaacattagcaaaccgtcgttctagagatgacgtagataaccgccgctctatggaaacaggaaatcgtcgctccagggatgaggtggacagccgccgctccagggatgaggtggacagccgccgctccatggaaacattagcaaaccgtcgctctagggaaaagcaggacaatcaccgcgcaatggaaacgttagctgaccgtcactccagggatgaagtggacagccgccgctccagggatgaggtggacagccgccgctccagggatgaggtggacagccgccgctccatggaaacattagcaaaccgtcgttccagggatgtggtagacagccgccgttctatagaaatattagcaatccgaggttctagaaatgaggtagaaagccgccatgcaatggaaacgttagctgaccggcgcttcagggacgagatagacagccgccgctccatggaaacattagcaaaccgtcgctccagggatgaggtggacagccgccgtgtaaggaatgaaaataacagccgccgtgtagaaaatgaagtagtcagtcgccgcgccatggacacattagcaaaccgtcgctccagggatgaggtggacagccgccacaccatggaaacattagcaaaccgtcgctctagggatgaggtggacagccgccgctccagggatgaggtggacagccgccgctccatggaaacactagcaaaccgtcgttctagagatgaggtaaataaccgccgctctatggaaacgttagaaaatcgttgctccagggatgaggtggacagccgccgtataaggaatgaagttaacagccgccgtgtagaaaatgaagtaaacagccgccgcacaatggaatcattagtaaaccgtcggtccagggatgaggtggacagccgccgcaccatggaaacattaacaaaccgtcactccagggatgaggtggacagccgccgctccatggaaacactagcaaaccgtcgttctagagatgaggtaaacaaccgccgctctatggaaacgttagaaaaccgtcgctccagggatgaggtggacagccgccgtgtaaggaatgaagtagacagcccccgcgccatggaaacactagctgaccgtcgctccagggatgaggtggacagccgccgcaccatggaaacattaacaaaccgtcactccagggatgaggtggacagccgccgctccatggaaacactagcaaaccgtcgttctagagatgaggtaaacaaccgccgctctatggaatcattagtaaaccgtcggtccagggatgaggtggacagccgccgcaccatggaaacattaacaaaccgtcactccagggatgaggtggacagccgccgctccatggaaacactagcaaaccgtcgttctagagatgaggtaaacaaccgccgctctatggaaacgttagaaaaccgtcgctccagggatgaggtggacagccgccgtgtaaggaatgaagtagacagcccccgcgccatggaaacactagctgaccgtcgctccagggatgaggtggacagccgccgcaccatggaaacattagcaaaccgtcgcccctgggataaggtggacagccgccgtgtaaggaatgaagtagacagcccccgcgccatggaaacactagctgaccgtcgctccagggatgaggtggacagccgtcgctccatggaaacattagcaagccgacgcttcagggaaaagcgggacaatcgccgcgcaatggaaactttagctgaccgtcactccagggacgaggtagacagccgccgctccatggaaacattagcaaaccgtcgctccaggggtgaggtggacagccaccgcgccatggaaacattaacaaaccatcgatccagggatgacttggacagtcgccgcgccatggaaacattagcaagccgtcgctccagggatgaggcggacagccgccatgtaaggaatgaagttaacagccgccgtgtagaaaatgaagtagtcggccgccgcgccatgaacacattagcaaaccgtcgctccagggatgaggtggacagccgtcgctccagggatgaggtggacagccgccgcaccatggaatcattagcaaaccgtcgctccagggatgaggtggacagccgccgtgtaaggaatgaagtagatagcccccgcgccatggaaacactagctgaccgtcgctccagcgatgaggtggacagccgccgctccatgcaaacattagcaaaccgtcgctccagcgatgaggtggacagccgccgcaccatggaaacaatagcaagccgtcgcttcagggaaaggcgggacaatcgccgcgcaatggtaactttagcaagccgtcgctccagggatgaggtggacagccgccgcgccatggaaacattaactaaccgtcgatccagggatgacttgggcagccgccgcgccatgaacacgttagcaaaccgtcgctccagggatgaggtggacagccgtcgctccagggatgaggtggacagccgccgctccatggaaacactagcaaaccgtcgttatagagatgaggtaaataaccgccgctctatggaaacgttagcaaaccgtcgctccagcaatgaggtggatagccgccgtgtaaggaatgaagtagatagcccccgcgccatggaaacactagctgaccgtcgctccagcgatgaggtggacagccgccgctccatgcaaacattagcaaaccgtcgctccagcgatgaggtggacagccgccgctccatgcaaacattagcaaaccgtcgctccaaggatgaggtggacagccgccgtgaaagaaatgaagttaacagccgcctcgccatggaatcattagcaagccgtcgctccagggatgacgtggacagccgccgttccatggaaacattagtttaccgtcgctccagggatgaggtggacagccgtcgctccagggatgaggtggacagccgccgtgtaaggaatgaagtagatagcccccgcgtcatggaaacactagctgaccgtcgctccagcgatgaggtggacagccgccgctccatgcaaacattagcaaaccgtcgctccaaggatgaggtggacagccgccgtgaaagaaatgaagttaacagccgcctcgtcatggaatcattagcaaaccgtcgctccaaggatgaggtggacagccgccgcaccatggaaacattagcaagccctcgttccagggatgaggtggacagccgccgcaccatggaaacattagcaaaccgtcgctccagggatgaggtggacagccgccgtgtaaggaatgaagtagatagccccgcg
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]