LOCUS       XM_037263408            6214 bp    mRNA    linear   VRT 08-NOV-2020
DEFINITION  PREDICTED: Syngnathus acus argonaute RISC component 4 (ago4),
            transcript variant X3, mRNA.
ACCESSION   XM_037263408
VERSION     XM_037263408.1
DBLINK      BioProject: PRJNA673235
KEYWORDS    RefSeq.
SOURCE      Syngnathus acus (greater pipefish)
  ORGANISM  Syngnathus acus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei;
            Syngnathidae; Syngnathus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051096.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Syngnathus acus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6214
                     /organism="Syngnathus acus"
                     /mol_type="mRNA"
                     /db_xref="taxon:161584"
                     /chromosome="11"
     gene            1..6214
                     /gene="ago4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 26 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:119129977"
     CDS             180..2804
                     /gene="ago4"
                     /codon_start=1
                     /product="protein argonaute-4 isoform X3"
                     /protein_id="XP_037119303.1"
                     /db_xref="GeneID:119129977"
                     /translation="

MEALGPGPPAPTSLFQPPRRPGLGTVGKPIRLLANHFQVQIPKIDVYHYDIDIKPEKRPRRVNREVVDTMVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDLEVTLPGEGKDQTFKVSLQWVSVVSLQMLLEALSGHLNEVPEDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPVIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNDMTEVTGRVLPAPMLQYGGRVSTDTGRDCGRNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKMSYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQDMSQEQLFSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCSDKAERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHYDTQHTMYFA"

     misc_feature    261..650
                     /gene="ago4"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    681..833
                     /gene="ago4"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    834..1196
                     /gene="ago4"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(990..992,1035..1037,1077..1079,1089..1091,
                     1143..1145,1164..1166,1170..1172)
                     /gene="ago4"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1335..2675
                     /gene="ago4"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1779..1781,1791..1793,1827..1838,1845..1847,
                     1869..1871,1878..1880,1890..1892,1902..1904)
                     /gene="ago4"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1983..1985,1989..1991,2229..2231,2643..2645)
                     /gene="ago4"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      

gcgccagaagcggcagtatcagtagttcgggtcagccagcccagtcaacagcactcctcgctgtcttttattccctttttcttaaattagccactttaagcttcgcgataccgcccccaatttcagcgtcggtacggagccgccaggccgggacagagtcggagagcgaggcctcggcaatggaagcgctcggacccggcccgcctgctcctacctctctgttccagcctccgcggcgtcccggccttggcacggtggggaaacccatccgtctcctggccaaccacttccaagtgcagattcccaagattgatgtctatcattatgatattgacatcaagcctgagaaacggccgcggagggtcaacagggaagtggtggacaccatggtgcggcacttcaaaatgcaaatttttggagatcgacaacctggctatgatgggaagaggaacatgtacacagcgcacccactgccgataggaagggacagggtggatttggaggtgaccctacctggcgaaggcaaagatcaaaccttcaaggtttccttgcagtgggtgtctgtggtcagccttcagatgctcctcgaagcgttgtccggtcacctgaacgaagtcccggaggactccgttcaggctctggatgtcatcacgcggcatctcccttccatgagatacactccagtggggcgttccttcttttctcctcctgagggctactaccatcctttaggtggaggcagggaagtgtggtttggtttccatcagtccgtccgtcccgccatgtggaacatgatgctcaacatcgatgtgtcggccactgctttctaccgtgcccagccggtgatcgagttcatgtgcgaggttttagatatccagaacatcaacgaacaaaccaaacccctgactgattcgcagcgtgtcaaatttaccaaggaaattagaggcttgaaagtggaggtcacccactgtggccagatgaagaggaagtaccgcgtgtgcaacgtcacccgccggccggctagccaccaaacgttccccttacagctggagaatggccaggcaatggagtgcaccgtcgcccagtattttaagcagaagtacaatctgcaactcaagtatcctcatttgccctgtctgcaagtaggacaggaacagaagcacacttatctgccattggaggtctgcaacatcgtagccggacaacgctgtattaagaaactcacagacaaccagacgtccaccatgatcaaagctaccgctcgctccgcccctgatagacaagaagagatcagcagactggtcaaaagcaacagcatggtcgggggcccggacccgtacctgaaggaatttggcattgtggttcacaatgacatgaccgaggtgaccggacgagtgctccctgcgcccatgctacagtatgggggccgggtgagtacagataccgggagggactgcggcaggaataaaacggtggccacgcccaatcagggcgtgtgggatatgagaggcaagcagttctacgccggtatcgagatcaaggtctgggccgtggcttgcttcgcgccgcagaaacaatgccgagaggatctgctcaagagcttcactgaccaattgcgtaagatctcaaaggatgccgggatgcccattcagggccagccatgtttctgtaaatacgcccaaggggcggacagtgtggagcctatgtttaaacacctcaagatgtcttacgtggggctgcagctcattgttgtcatcctgcctggaaaaacacccgtctatgctgaggtgaagcgtgttggggacactctcctcggaatggccactcagtgtgttcaggtgaagaatgtggtcaagacgtccccgcaaacgctctccaacctctgcctcaagatcaatgccaagctgggaggcatcaacaacgtcctggtgccgcaccagaggccgtccgtgttccagcagcccgtcatcttcctgggcgcagatgtcactcatcccccagcaggtgacggcaagaaaccatccatagcggcggtggtgggcagcatggatggccacccgagccgttactgcgccacagttcgagtccagacgtcccgtcaagacatgtcccaggagcagctcttcagtcaggaagtcattcaagacctgaccaacatggtgcgagagctactgatccagttttacaagtccacacgcttcaagccaactcgtatcatctattatcgcggcggtgtgtctgaaggccagatgaaacaggtcgcatggccggagttgatagccatcaggaaggcgtgcatcagtctagaggaggactaccggccgggcattacctacattgtggtccagaagcgtcatcacactcgtcttttctgctctgataaagctgagagggttgggaagagtggcaacgtaccagccggcaccacggtggacagcaccatcacgcatccgtccgagtttgatttctatctgtgcagccacgctggaattcagggtaccagtcgtccatcccactaccacgtcctgtgggacgacaactgtttcacggccgacgaactgcagcttctcacctaccagctgtgccacacttacgtccgctgcacgcgctccgtctccatcccggcgcccgcttactacgccaggctggtggctttccgggctcgataccatctggtggacaaagaccatgacagtgctgagggaagccatgtgtcaggtcagagtaacggccgtgaccctcaggctttagccaaggcggttcagatccactatgacacccagcacaccatgtacttcgcctaaactagcgagcttatctgcccgtccacacgtggactcgcatcccgtctgtatttttcttttttatccattatatcctcgtctttgtacttcctcatcacagtcacttttttttttctttttctaaatgtgcaccaaagcgacaatttgacgggattctatacgcggtagctttttaatgaaacaagcttaagcttagtcttcccagtcgggtcgccattctaaccagcaatttggcacggaaaacccttaagggtttccggcgcacggaaaaatgacaggaaaataacaagaaaaaaaccacacacacatactactacataattgagccattatttttctttttttttttcttttttctatctgaatgtctacactcgtatttttaagatactgagcaacggagtgtttcagccaccatttggtgtcgacgaaactctttggctctcccagctaggcggaactctgatctacttttacctcaaagcccactcgggcaaaatctgtcacaaggtcttgggttttatcgggagggaactctacatgaagagatggagcggggaggggcaaggggggtgggggttgaccttttgagaatgaatatatatattctatattttttttcctttttatgagtgttttaacttttttcctctttcagtcttttacaaacgaggtgacctgggtgttcatgcccattactactttcctcccatccttgcggaagagtagccggtgtttgtgtaaatatatgttttgtgtgtgcgcgcacaagctttcatggcaggccactgaattgtaaagggaaattgaggagctaactgctgtaaatgcctcagatttgttgtttttttatattcaagtatacagtacatataaatcatatttacatctctagagcagctttgagagaaatgaattcagcgaggaggttttagcagtcctgggtcgcttatagattcaaattaagttcgatttttggactaccataggcgggatttgcacacgtgctgggcaaactgttgatttttatttttttttttttttggatagaaagtgatatttcatctagggaacaatatctgaggtctggccggggacgggctctgctttgggagctgctgtttgggcttaaggcctaaaaacacagcagacgtatcagcgccgccttcggtgtgacaaataggatttttctttggacctgattatcggaaagattttatgatgacactgctggacgttgttttttttatggtggtaatttctagggccagaaagcagagtagttatgttttttttttttttttaggtctcatttgcaaatgatgaccaattcattgcactgacccgggacactaggcaagcaacagagggcactctcgatctctattacctttatgcatttatacatacgaatcaataaagcagatttgtaaatttttaatataaggatgttttgtggttatcttaaaaaaaaaaaaaaaaacggttggttagaatttagtgctaccgtgttatcgtggttgtcaatgttgtaattgttgtgattgaaaattttagtcggggggcgggtgaattgtttggagtagttcagggggttggctggaggtcacgagttgggattttgttgtagcatcgcggctaatgggcgagaagacgtggatggattaactcatgcttcctttgttggtcttcaacttgaagcttggtgtcgaaattggggcttccgtgtagcactccagagtcggttttgaccagttagatggagacaatcagggatcgtaattgtagcggagctagatttggggggggtgttgtattttcaaacggtttgcgataggcaatgagattcctttttttttttttatataaatggtttcaattcttctgtatgtatttgatgtataccactcttactcttaaaggtctttgctatacaagtgtttcttattctcatgcatttttaacactggatcgaatgagttagcatgagcactgcccctggtttctattaacgcccattaaacggtcacttccggagttgcacaagtggcgcctccccgggttttatttccggacggtctgagagcgatgggggtggcagtcggcacgcacgcctcatcaggggggtacagctcaaaagtcaaaacccttttgtaataaaccacccgtaaagcagcaggtttattatgaatgagtttgagcacttacctgttgtaggcgtgtgcgttggcgtcaagccgagaatttgagaggcttgtccggattttgaatgcaaataagtgaagggaggcgctatggaaggcttttattcttcatctggtttttacaaattgaatatttaatgaagcttaagcctgatgaactgcagtgctgtttgtaaaatggcagcatcaagcaatataacccagttcgacttttaaaatgcagaaacacaaagctgttattttcattattttttttttttattgtcttctgtccttgtagtttttttcccccccatgtttcatttgcttgtgtcaatcagtggggatgtgcatttgacatttggtggtatagttacatagattttagacacattttgttgactaggttttgcttgcctgcatgccagagtattctacttaaaaaaaaaaaaaaaaaaaaaaaaaaggggggggttttgaattatatttataaggcttaaaaaaaatctttttttggtgtcaatgtatcactttattgaaactgtttagcaatatctgttcaatttttttgtgatcttcccacacaatgtcaattttgtctattgtacggcaaagatgtatcggggggggggtctgctcttttggtcgtgttcaaattcaaacgaggtactttattcataaatcatgtccgtttaagagcataccccccctcctctttttgccgagttatagtgagcctccatatttgtctccttcttcctggttcatacctgtggccaagcctctttagattgtctcctttctccacaaaagggttcccctctttttacctcttataaattaagacttatttctgtcccaaaaaaggggagggtgagaaactgttacattcccattatcactctgttatatcaattatcttaatagagttctttgtgtatttttatttttggcaaggagggagctgtttcagctctgctccaatttttttttttttttttgtcatctcgtgttctctaatagcaatacaaaggattggaacgcttcaattcaagctatcctacactttttttttgaccagtagaaggggcatgttgtagaacctcccctatatttggccattcacactgtattgctattatgaaaagctcaaataattgttttttagcctgcagggaattattgtgtttatgtgcaaagtaataaattggtattttatgcctgtaa

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