2024-05-11 11:54:55, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_036565068 1370 bp mRNA linear VRT 13-OCT-2020 DEFINITION PREDICTED: Colossoma macropomum uncharacterized protein DDB_G0290685-like (LOC118804568), mRNA. ACCESSION XM_036565068 VERSION XM_036565068.1 DBLINK BioProject: PRJNA667941 KEYWORDS RefSeq; includes ab initio. SOURCE Colossoma macropomum (tambaqui) ORGANISM Colossoma macropomum Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Colossoma. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023496051.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Colossoma macropomum Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 37% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..1370 /organism="Colossoma macropomum" /mol_type="mRNA" /db_xref="taxon:42526" /chromosome="Unknown" gene 1..1370 /gene="LOC118804568" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 69% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:118804568" CDS 1..1140 /gene="LOC118804568" /codon_start=1 /product="uncharacterized protein DDB_G0290685-like" /protein_id="XP_036420961.1" /db_xref="GeneID:118804568" /translation="
MRSGVNEVDQHEVDKHDEEAGDENDEGIYEVDQDEVHEGEVDDENHEEDVNEVDQDEVDKDEVGDENDEGVNEVDQDEVDEDQEVDGDGNDEEGVSEVDEDEVDGDENDEERVNEVDQDEVDEELGDENNNDGINEGNEDDEVGDENEEGVNEVDLDEVDDEVDGEENDEKGVSEVDQDEVDGDKNDEEGVSEVDQDEVDGDKNDEEGVSEVDQDEVDGDKNDEKGVSEVDQDEVDGDKNDEEGVSEVDQDEVDDEETDGDENDEEGVNEVDQDDANENNINMRVRMMRLMVRIMSMMKLRMRLIKRRVMRMKTEVDQHEGDEVDEVDGDENKDEPNCGLADKIRRYYIFTNFPVISEQKYISCYRFAESLPFFLNWYR"
misc_feature <34..810 /gene="LOC118804568" /note="K+-dependent Na+/Ca+ exchanger; Region: 2A1904; TIGR00927" /db_xref="CDD:273344" ORIGIN
atgaggagtggggttaatgaggttgatcaacatgaggtggacaagcatgatgaggaagctggtgatgagaatgatgaggggatttatgaggttgatcaggatgaggttcatgagggtgaggttgatgatgagaaccatgaggaggatgttaatgaggttgatcaggatgaggttgataaggatgaagttggtgatgagaatgatgagggggttaatgaagttgatcaggatgaggttgatgaggatcaggaagttgatggtgatgggaatgatgaggagggtgttagtgaggttgatgaggatgaggttgatggtgatgaaaacgatgaggagagggttaatgaggttgatcaggatgaggttgatgaggaacttggtgatgagaataataatgacgggattaatgagggtaatgaagatgatgaagttggtgatgaaaatgaggagggggttaatgaggttgatttggatgaggttgatgatgaagttgatggtgaagagaatgacgagaagggggttagtgaggttgatcaggatgaggttgatggtgataagaatgatgaggagggggttagtgaggttgatcaggatgaggttgatggtgataagaatgatgaggagggggttagtgaggttgatcaggatgaggttgatggtgataagaatgatgagaagggggttagtgaggttgatcaggatgaggttgatggtgataagaatgatgaggagggggttagtgaggttgatcaggatgaggttgatgatgaggaaactgatggcgatgagaacgatgaggagggggttaatgaggttgatcaggatgatgcgaatgagaataatattaacatgagggtgaggatgatgaggttgatggtgagaataatgagcatgatgaagcttaggatgaggttgatcaagagaagggtaatgaggatgaagacagaggttgatcagcacgagggtgacgaggttgatgaggttgatggtgatgagaataaggatgaacctaactgtggtttggctgataaaatcagacgatattacattttcacaaactttcctgtcatatctgagcagaaatatatcagctgttatcggtttgcagaatctttacctttttttttaaattggtaccgttgaccatattcatttcagttgggcgttactactaaatctacagggctactctggtctaaatctaattcagacaacatggtgaacgccacaaggtctctcagttacccttaagaaaacaacattaggctgaacgggaacgacacactagctctgttggcatttttgtcgaaccagttgagggatttatcattcactcagattactcctcagcctttcacgtaaacattaactcc
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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