2024-04-27 09:16:36, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_036178366 2502 bp mRNA linear ROD 23-SEP-2020 DEFINITION PREDICTED: Onychomys torridus protein argonaute-1 (LOC118577737), transcript variant X2, mRNA. ACCESSION XM_036178366 VERSION XM_036178366.1 DBLINK BioProject: PRJNA664182 KEYWORDS RefSeq. SOURCE Onychomys torridus (southern grasshopper mouse) ORGANISM Onychomys torridus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Onychomys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_050444.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Onychomys torridus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2502 /organism="Onychomys torridus" /mol_type="mRNA" /db_xref="taxon:38674" /chromosome="2" gene 1..2502 /gene="LOC118577737" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns" /db_xref="GeneID:118577737" CDS 90..2210 /gene="LOC118577737" /codon_start=1 /product="protein argonaute-1 isoform X2" /protein_id="XP_036034259.1" /db_xref="GeneID:118577737" /translation="
MPHRVGACARGTSSLPVPARYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 156..308 /gene="LOC118577737" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 309..671 /gene="LOC118577737" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(465..467,510..512,552..554,564..566,618..620, 639..641,645..647) /gene="LOC118577737" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 804..2081 /gene="LOC118577737" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1215..1217,1227..1229,1263..1274,1281..1283, 1305..1307,1314..1316,1326..1328,1338..1340) /gene="LOC118577737" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1419..1421,1425..1427,1635..1637,2049..2051) /gene="LOC118577737" /note="active site" /db_xref="CDD:240015" ORIGIN
gatccctgtgcccttggagtctgtgcaagccctggatgtggccatgaggcacctggcatctatgaggccagggctcctccgtgcccaggatgcctcacagggtgggggcctgtgcccgagggaccagttctctgcctgtccctgccaggtacacccctgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcagccactgccttctacaaagcacagccagtgattgaattcatgtgtgaggtcctggacatcaggaacatagatgaacaacccaagcccctcacggattcccagcgtgttcgctttaccaaggagataaaaggcctgaaggtggaagtgacccactgtggacagatgaagaggaaataccgcgtgtgtaatgttacccgccgccctgctagtcatcagacgttccccttgcagctggagagtggacagactgtggagtgcaccgtggcacagtatttcaagcagaaatataaccttcagctgaagtatccccacctgccctgcctacaagtcgggcaagaacagaagcatacctatttgcccctggaggtctgtaacattgtggccgggcagcggtgcattaagaagttgactgacaaccagacctcaaccatgataaaggctacagccaggtcggccccagacagacaggaggagatcagtcgcctgatgaagaatgccagctacaacttagatccctacatccaggagtttggaatcaaagtgaaggacgacatgacggaggtgaccgggcgagtgctgccggcgcccatcttgcaatatggcggccggaaccgggccattgctacacccaaccaaggtgtctgggacatgcgtgggaaacagttctacaatgggattgagatcaaagtctgggccatcgcctgcttcgcaccccaaaaacaatgtcgagaagaggtgctcaagaacttcacagaccagctgcggaagatttccaaggatgcagggatgcccatccagggtcagccttgtttctgcaagtacgcacaaggtgcagacagtgtggagcccatgttccgacatctcaagaacacctactcgggactgcagctcatcattgtcatcctgccggggaagacgccagtgtatgctgaagtgaaacgtgttggagatacactcttgggaatggcaacacagtgtgtgcaggtgaagaatgtggttaagacctcacctcagactctgtctaatctctgcctcaagatcaatgtcaaacttggcggcattaacaacatccttgttccacaccagcgctctgctgtttttcaacagccagtgattttcctgggagcagatgttacacaccccccagctggggatgggaagaagccgtctatcacagcggtggtaggcagtatggacgcacaccccagccgctactgtgctaccgtgcgtgtgcagcgcccccggcaggagatcattgaagacctgtcctatatggtgcgggagctgctcatccagttctacaaatccacccgcttcaagcccacccgaatcatcttctaccgagatggggtccctgagggccagctcccccagatccttcattatgagctgcttgccattcgagatgcctgcatcaaactggaaaaagactaccagcctgggatcacttacattgtggtgcagaaacgccatcacacccgcctgttttgtgcagacaagaatgagcgaattgggaagagtgggaacattcccgctgggaccacggtggacaccaacatcacccacccgttcgagtttgacttctatctgtgcagccatgcaggcatccagggtaccagccgaccatcccattattacgtcctttgggatgacaaccggttcacagcagatgaactccagatcttgacataccagctgtgccacacttacgtacgatgcacacgttctgtctctatcccagcacctgcctactatgcccgcttggtggctttccgggcacgataccacctggtagacaaggagcatgacagtggagaggggagccacatatcggggcagagcaatgggcgagacccccaggccctggccaaagctgtgcaggttcaccaggatactctacgcaccatgtacttcgcttgaaggcagaacgctgttacctcactggatagaagaaagctttccaagccctgggagctgtaccacccaaatccagaggaagcaaggaagagggaggtggggtcgggagttgtatgggagaccttgtttctatctgcagaggggatctaagggtgggaagaggaccagcaagacagactaccagccagaaatctgatagcaacctcatgtccccccacccccatcgtgttacatctgaccccactggaccaaaaggggcagcgttagtgcccaccatacacacacttgtctcgtg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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