2024-04-19 12:54:02, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_035505006 3246 bp mRNA linear PLN 04-AUG-2020 DEFINITION Aspergillus tubingensis RNA interference and gene silencing protein (AtWU_09900), partial mRNA. ACCESSION XM_035505006 VERSION XM_035505006.1 DBLINK BioProject: PRJNA645154 BioSample: SAMD00216538 Sequence Read Archive: DRR231531, DRR231532 KEYWORDS RefSeq. SOURCE Aspergillus tubingensis ORGANISM Aspergillus tubingensis Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus. REFERENCE 1 AUTHORS Yoshioka,I., Kusuya,Y., Yaguchi,T., Takahashi,H. and Kirimura,K. TITLE Draft Genome Sequence of Aspergillus tubingensis WU-2223L, a Citric Acid-producing Filamentous Fungus Belonging to Aspergillus Section Nigri JOURNAL Unpublished REFERENCE 2 (bases 1 to 3246) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (04-AUG-2020) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3246) AUTHORS Kirimura,K. and Yoshioka,I. TITLE Direct Submission JOURNAL Submitted (18-MAY-2020) Contact:Kohtaro Kirimura Waseda University, Faculty of Science and Engineering; 3-4-1 Okubo, Shinjuku-ku, Tokyo 169-8555, Japan COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_023336285). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..3246 /organism="Aspergillus tubingensis" /mol_type="mRNA" /strain="WU-2223L" /culture_collection="NBRC:111403" /db_xref="taxon:5068" /chromosome="Unknown" gene <1..>3246 /locus_tag="AtWU_09900" /db_xref="GeneID:56009378" CDS 1..3246 /locus_tag="AtWU_09900" /codon_start=1 /product="RNA interference and gene silencing protein" /protein_id="XP_035360899.1" /db_xref="GeneID:56009378" /translation="
MSSGGQRGRGRGDRGKGGDRGQGDRGRGRGGPPRGGGAGRGSTTELPIRPGPSDGGFRGRGGRGDGGGGGGGGRGFDGGRGRGSDNRGRGRGFDGGRGGGRGGRGGRGGGRGGFDQGPSVYSPGGPVPTPSPQVEKTENAIGAAVLAKKQKKAAEWPLRPGFGTQGRPVTLYANYFELKSVGKQLYRYHIDISGDAAGRKPTGKKARHIVRLFLEEHLAQFRNSVVTDYVSTLIANQKILIEQEAAEYDVRYRDEYEDEYPEDPKVYRVRCQYTGTLNPSDLLNYLTSSDAAAMFASKADVIQAMNIILGFQPKSDPTIASVGANKHYAICGGREEKYSLGDGLEALRGFFVSVRAATSRLLVNVQVKYVACYQEGPLAHIFGLYEPFRPRELNNLRRFIRNLRVQVTHIKKTNKKGQAIPRFKRIAGVAIPRDGASQPMPPKVPRLGAGPKEVEFFLDAPGQQPSASQQTSRSKKGKKPVKAGPQPAGKYISVADFFLQNYNIQCDPKMPVVNVGTRENPSYLPVEVCEVVPGQQANTKLTPNQTRNMLNFAVRGPPQNAQSIVAQGTEVLGLGASPNPTLVDFGIQNDPRLITVPGRVLPAPSVLYRDESKPSQKQIKPFSGSWNMRSIRFSTSTKLPSWTWLALDYEGARYPAIRPEDLSANLKGFTDKLNEIGVNASPPKTGQTLLLTRRGYDEEIREYNTKAIDRAVAELIEKHKPMLILTVLPSNDADIYNIVKRACDLTHGVRNVNVVADKFRKPNNDQYWANVGLKFNLKLGGNNQLIDPKELGLIGQNKTMLVGVDVTHPSPGSSSAAPSVAGMVASIDSTLGQWPAELRIQKPREEMVAELDTMLKAHLRRWVRNRKTYPENIIVYRDGVSEGQYELVVQRELPLLKEACKEVYPATDTSKGLPRISIVIVGKRHHTRFYPTKLEDADKFGNPENGTVVDRGVTEARNWEFYLQAHTALKGTARPAHYFTVWDEVFCREKAIPPYENAADILEGLTHRLCYLFGRATKAVSICPPAYYADLVCTRARCYLSKVFDETPTGSVITGTDPGASAREFLNVKIHPNVSDTMFYI"
misc_feature 376..3240 /locus_tag="AtWU_09900" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 1738..3120 /locus_tag="AtWU_09900" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2206..2208,2218..2220,2254..2265,2272..2274, 2299..2301,2308..2310,2320..2322,2332..2334) /locus_tag="AtWU_09900" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2413..2415,2419..2421,2632..2634,3088..3090) /locus_tag="AtWU_09900" /note="active site" /db_xref="CDD:240015" ORIGIN
atgtcgtcgggaggtcagcggggtcgtggtagaggagatcggggcaaaggcggagaccgtggccagggagaccgtggtcggggccgcggcggtcctcccagaggtggaggtgcaggccgaggctcgaccactgagctccctatccgtcccggtcccagtgatggcggttttagaggtcggggaggaagaggtgatggtggtggtggtggtggtggtgggaggggatttgatgggggccgtggacggggttcggataatagaggacggggaagagggtttgatgggggccgtggtggtggacgtggtggccgcggaggtcggggaggagggcgaggcggttttgatcaaggcccgtcggtgtactctccgggtggaccggtccctacccccagtccccaggtcgagaaaacggaaaacgctatcggagcagcggtgcttgcgaagaagcagaagaaagctgcggagtggccgctgcggcctggttttggcacccagggccggcctgtcacgctgtacgcaaactattttgagctaaagtcggtggggaagcagctataccgctaccacatcgatatctcaggcgacgcagctggtaggaagcctaccggcaagaaagcccgtcacatcgtgcgattgtttctcgaagaacatttggctcagttccgtaacagtgttgttaccgactatgtatccacgcttattgcaaaccagaagatcctgatcgaacaggaggccgccgaatatgatgttcgctaccgggatgaatatgaggacgagtaccccgaggatcctaaggtctaccgggtgaggtgccaatatacaggcaccctcaacccatcagacctcctgaactatctcacatcttcagatgctgctgccatgtttgcatccaaggccgacgttatacaggccatgaatattattctgggctttcaacccaagagtgatcccaccatcgcttctgtcggtgccaataagcactatgctatctgtggaggtcgtgaggagaaatattctctcggtgacgggctggaggcactccggggcttctttgtcagtgttcgtgccgcaacttcgcgtcttctggtgaacgtacaggtcaagtacgttgcctgctaccaagaaggcccgctggcgcacatcttcgggttgtatgagccattccgccctcgcgagctcaacaacttgcggcggttcattcgcaacttgagggttcaggtgacccacatcaagaaaactaataagaaaggccaagctattccacggttcaagcgcattgctggtgttgcaatacccagagacggtgcctcgcagccaatgccccccaaagtgccaagacttggtgcaggccctaaagaagtggaattcttccttgacgctccaggtcaacaaccgtcggcatcacagcagacttctcgttcgaagaaaggaaagaagcccgtcaaggcgggacctcagccggctggcaagtatatcagtgttgcagacttcttcctccaaaattacaacatccaatgcgacccaaagatgcccgtagtgaacgtcggcactcgagagaatccgagctatctgcccgtcgaagtgtgtgaggtcgtgcctggtcagcaggctaacaccaagcttacacctaaccaaacgcggaacatgctaaactttgctgtgcgaggcccaccgcaaaatgctcaatcaattgtggcgcaagggacagaagtgttgggtctgggagcgtcaccaaatcccaccctcgtggacttcggaatccagaatgatcctcggctaataaccgtacctggacgagtactaccggcgcctagcgttctgtacagggatgagagcaagccgagtcaaaagcaaatcaagcccttctcaggaagttggaacatgagatcgattcggttttcaacgtccacgaagctgccttcttggacttggcttgccttggactacgaaggcgcgagatatccggccatcaggcccgaagacttgagcgccaacctcaaaggctttacggacaagttgaacgagatcggcgtgaatgccagcccaccaaagactggacaaactctacttttgacgaggaggggatatgatgaggagattagagagtataatacaaaggccatcgacagagccgttgccgagctcattgagaagcacaagcccatgctcatactgacggtccttccgagcaacgacgctgatatctataatattgtcaagagggcctgcgatttgacgcacggcgtccgcaatgtcaacgtcgttgccgacaaattcagaaagcctaacaatgatcagtactgggcaaacgtcgggctcaagttcaacctcaagctgggaggaaacaaccagctgattgatcccaaagagctaggcctcattggacaaaacaagactatgctcgtcggggtggacgtcactcacccgtcccctgggtcttcctccgcagcccctagtgttgctgggatggttgcctcaatcgattcgactctcggccaatggccagcagaactccggattcaaaagcctagggaagaaatggtcgctgaactcgacaccatgctgaaggcccaccttcggcgctgggttcgtaaccggaagacctacccggagaacatcatcgtttaccgcgacggagtctccgaaggccagtacgagctcgtggtgcagcgcgaactccctctcctcaaagaagcatgcaaggaagtatatcccgccaccgacacctccaaaggtcttcctcgcatctcgatcgtgatcgtaggtaaacgccaccacacacgcttctacccaaccaagctggaggacgccgacaaattcggcaacccggaaaacggcaccgtcgtcgaccgcggcgtcaccgaagcccgcaactgggagttctacctgcaggctcacactgctttgaagggtaccgctcgcccagcccactactttaccgtctgggacgaggtcttctgccgagagaaggccatacccccatacgaaaacgccgcagacatcctagaaggcctcacccaccgactctgctacctcttcggcagagccaccaaagccgttagcatctgcccgcccgcctactacgccgacctggtttgcaccagagctcggtgctaccttagcaaagtcttcgatgaaaccccaaccggaagtgtcattacgggcactgaccctggcgcttctgctcgggagtttctgaacgtcaagatccatccgaatgttagcgacactatgttctacatctag
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@meso_cacase at
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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