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2024-04-19 12:54:02, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_035505006            3246 bp    mRNA    linear   PLN 04-AUG-2020
DEFINITION  Aspergillus tubingensis RNA interference and gene silencing protein
            (AtWU_09900), partial mRNA.
ACCESSION   XM_035505006
VERSION     XM_035505006.1
DBLINK      BioProject: PRJNA645154
            BioSample: SAMD00216538
            Sequence Read Archive: DRR231531, DRR231532
KEYWORDS    RefSeq.
SOURCE      Aspergillus tubingensis
  ORGANISM  Aspergillus tubingensis
            Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina;
            Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae;
            Aspergillus.
REFERENCE   1
  AUTHORS   Yoshioka,I., Kusuya,Y., Yaguchi,T., Takahashi,H. and Kirimura,K.
  TITLE     Draft Genome Sequence of Aspergillus tubingensis WU-2223L, a Citric
            Acid-producing Filamentous Fungus Belonging to Aspergillus Section
            Nigri
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3246)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-AUG-2020) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 3246)
  AUTHORS   Kirimura,K. and Yoshioka,I.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAY-2020) Contact:Kohtaro Kirimura Waseda University,
            Faculty of Science and Engineering; 3-4-1 Okubo, Shinjuku-ku, Tokyo
            169-8555, Japan
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_023336285).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..3246
                     /organism="Aspergillus tubingensis"
                     /mol_type="mRNA"
                     /strain="WU-2223L"
                     /culture_collection="NBRC:111403"
                     /db_xref="taxon:5068"
                     /chromosome="Unknown"
     gene            <1..>3246
                     /locus_tag="AtWU_09900"
                     /db_xref="GeneID:56009378"
     CDS             1..3246
                     /locus_tag="AtWU_09900"
                     /codon_start=1
                     /product="RNA interference and gene silencing protein"
                     /protein_id="XP_035360899.1"
                     /db_xref="GeneID:56009378"
                     /translation="
MSSGGQRGRGRGDRGKGGDRGQGDRGRGRGGPPRGGGAGRGSTTELPIRPGPSDGGFRGRGGRGDGGGGGGGGRGFDGGRGRGSDNRGRGRGFDGGRGGGRGGRGGRGGGRGGFDQGPSVYSPGGPVPTPSPQVEKTENAIGAAVLAKKQKKAAEWPLRPGFGTQGRPVTLYANYFELKSVGKQLYRYHIDISGDAAGRKPTGKKARHIVRLFLEEHLAQFRNSVVTDYVSTLIANQKILIEQEAAEYDVRYRDEYEDEYPEDPKVYRVRCQYTGTLNPSDLLNYLTSSDAAAMFASKADVIQAMNIILGFQPKSDPTIASVGANKHYAICGGREEKYSLGDGLEALRGFFVSVRAATSRLLVNVQVKYVACYQEGPLAHIFGLYEPFRPRELNNLRRFIRNLRVQVTHIKKTNKKGQAIPRFKRIAGVAIPRDGASQPMPPKVPRLGAGPKEVEFFLDAPGQQPSASQQTSRSKKGKKPVKAGPQPAGKYISVADFFLQNYNIQCDPKMPVVNVGTRENPSYLPVEVCEVVPGQQANTKLTPNQTRNMLNFAVRGPPQNAQSIVAQGTEVLGLGASPNPTLVDFGIQNDPRLITVPGRVLPAPSVLYRDESKPSQKQIKPFSGSWNMRSIRFSTSTKLPSWTWLALDYEGARYPAIRPEDLSANLKGFTDKLNEIGVNASPPKTGQTLLLTRRGYDEEIREYNTKAIDRAVAELIEKHKPMLILTVLPSNDADIYNIVKRACDLTHGVRNVNVVADKFRKPNNDQYWANVGLKFNLKLGGNNQLIDPKELGLIGQNKTMLVGVDVTHPSPGSSSAAPSVAGMVASIDSTLGQWPAELRIQKPREEMVAELDTMLKAHLRRWVRNRKTYPENIIVYRDGVSEGQYELVVQRELPLLKEACKEVYPATDTSKGLPRISIVIVGKRHHTRFYPTKLEDADKFGNPENGTVVDRGVTEARNWEFYLQAHTALKGTARPAHYFTVWDEVFCREKAIPPYENAADILEGLTHRLCYLFGRATKAVSICPPAYYADLVCTRARCYLSKVFDETPTGSVITGTDPGASAREFLNVKIHPNVSDTMFYI"
     misc_feature    376..3240
                     /locus_tag="AtWU_09900"
                     /note="protein argonaute; Provisional; Region: PLN03202"
                     /db_xref="CDD:215631"
     misc_feature    1738..3120
                     /locus_tag="AtWU_09900"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(2206..2208,2218..2220,2254..2265,2272..2274,
                     2299..2301,2308..2310,2320..2322,2332..2334)
                     /locus_tag="AtWU_09900"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2413..2415,2419..2421,2632..2634,3088..3090)
                     /locus_tag="AtWU_09900"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
atgtcgtcgggaggtcagcggggtcgtggtagaggagatcggggcaaaggcggagaccgtggccagggagaccgtggtcggggccgcggcggtcctcccagaggtggaggtgcaggccgaggctcgaccactgagctccctatccgtcccggtcccagtgatggcggttttagaggtcggggaggaagaggtgatggtggtggtggtggtggtggtgggaggggatttgatgggggccgtggacggggttcggataatagaggacggggaagagggtttgatgggggccgtggtggtggacgtggtggccgcggaggtcggggaggagggcgaggcggttttgatcaaggcccgtcggtgtactctccgggtggaccggtccctacccccagtccccaggtcgagaaaacggaaaacgctatcggagcagcggtgcttgcgaagaagcagaagaaagctgcggagtggccgctgcggcctggttttggcacccagggccggcctgtcacgctgtacgcaaactattttgagctaaagtcggtggggaagcagctataccgctaccacatcgatatctcaggcgacgcagctggtaggaagcctaccggcaagaaagcccgtcacatcgtgcgattgtttctcgaagaacatttggctcagttccgtaacagtgttgttaccgactatgtatccacgcttattgcaaaccagaagatcctgatcgaacaggaggccgccgaatatgatgttcgctaccgggatgaatatgaggacgagtaccccgaggatcctaaggtctaccgggtgaggtgccaatatacaggcaccctcaacccatcagacctcctgaactatctcacatcttcagatgctgctgccatgtttgcatccaaggccgacgttatacaggccatgaatattattctgggctttcaacccaagagtgatcccaccatcgcttctgtcggtgccaataagcactatgctatctgtggaggtcgtgaggagaaatattctctcggtgacgggctggaggcactccggggcttctttgtcagtgttcgtgccgcaacttcgcgtcttctggtgaacgtacaggtcaagtacgttgcctgctaccaagaaggcccgctggcgcacatcttcgggttgtatgagccattccgccctcgcgagctcaacaacttgcggcggttcattcgcaacttgagggttcaggtgacccacatcaagaaaactaataagaaaggccaagctattccacggttcaagcgcattgctggtgttgcaatacccagagacggtgcctcgcagccaatgccccccaaagtgccaagacttggtgcaggccctaaagaagtggaattcttccttgacgctccaggtcaacaaccgtcggcatcacagcagacttctcgttcgaagaaaggaaagaagcccgtcaaggcgggacctcagccggctggcaagtatatcagtgttgcagacttcttcctccaaaattacaacatccaatgcgacccaaagatgcccgtagtgaacgtcggcactcgagagaatccgagctatctgcccgtcgaagtgtgtgaggtcgtgcctggtcagcaggctaacaccaagcttacacctaaccaaacgcggaacatgctaaactttgctgtgcgaggcccaccgcaaaatgctcaatcaattgtggcgcaagggacagaagtgttgggtctgggagcgtcaccaaatcccaccctcgtggacttcggaatccagaatgatcctcggctaataaccgtacctggacgagtactaccggcgcctagcgttctgtacagggatgagagcaagccgagtcaaaagcaaatcaagcccttctcaggaagttggaacatgagatcgattcggttttcaacgtccacgaagctgccttcttggacttggcttgccttggactacgaaggcgcgagatatccggccatcaggcccgaagacttgagcgccaacctcaaaggctttacggacaagttgaacgagatcggcgtgaatgccagcccaccaaagactggacaaactctacttttgacgaggaggggatatgatgaggagattagagagtataatacaaaggccatcgacagagccgttgccgagctcattgagaagcacaagcccatgctcatactgacggtccttccgagcaacgacgctgatatctataatattgtcaagagggcctgcgatttgacgcacggcgtccgcaatgtcaacgtcgttgccgacaaattcagaaagcctaacaatgatcagtactgggcaaacgtcgggctcaagttcaacctcaagctgggaggaaacaaccagctgattgatcccaaagagctaggcctcattggacaaaacaagactatgctcgtcggggtggacgtcactcacccgtcccctgggtcttcctccgcagcccctagtgttgctgggatggttgcctcaatcgattcgactctcggccaatggccagcagaactccggattcaaaagcctagggaagaaatggtcgctgaactcgacaccatgctgaaggcccaccttcggcgctgggttcgtaaccggaagacctacccggagaacatcatcgtttaccgcgacggagtctccgaaggccagtacgagctcgtggtgcagcgcgaactccctctcctcaaagaagcatgcaaggaagtatatcccgccaccgacacctccaaaggtcttcctcgcatctcgatcgtgatcgtaggtaaacgccaccacacacgcttctacccaaccaagctggaggacgccgacaaattcggcaacccggaaaacggcaccgtcgtcgaccgcggcgtcaccgaagcccgcaactgggagttctacctgcaggctcacactgctttgaagggtaccgctcgcccagcccactactttaccgtctgggacgaggtcttctgccgagagaaggccatacccccatacgaaaacgccgcagacatcctagaaggcctcacccaccgactctgctacctcttcggcagagccaccaaagccgttagcatctgcccgcccgcctactacgccgacctggtttgcaccagagctcggtgctaccttagcaaagtcttcgatgaaaccccaaccggaagtgtcattacgggcactgaccctggcgcttctgctcgggagtttctgaacgtcaagatccatccgaatgttagcgacactatgttctacatctag
//

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]