2024-03-29 19:08:01, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_035385074 2109 bp mRNA linear VRT 07-JUL-2020 DEFINITION PREDICTED: Anguilla anguilla zona pellucida glycoprotein 3d tandem duplicate 2 (zp3d.2), mRNA. ACCESSION XM_035385074 VERSION XM_035385074.1 DBLINK BioProject: PRJNA643263 KEYWORDS RefSeq. SOURCE Anguilla anguilla (European eel) ORGANISM Anguilla anguilla Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Anguilliformes; Anguillidae; Anguilla. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_049201.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Anguilla anguilla Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2109 /organism="Anguilla anguilla" /mol_type="mRNA" /isolate="fAngAng1" /db_xref="taxon:7936" /chromosome="1" /tissue_type="liver" /dev_stage="adult" /country="Czech Republic: Elbe River" /lat_lon="50.2909 N 14.4971 E" /collection_date="29-Nov-2018" /collected_by="Martin Reichard" gene 1..2109 /gene="zp3d.2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns" /db_xref="GeneID:118209585" CDS 93..1811 /gene="zp3d.2" /codon_start=1 /product="zona pellucida sperm-binding protein 3d.2" /protein_id="XP_035240965.1" /db_xref="GeneID:118209585" /translation="
MFQHSIAPLVNKELMKPTRATGHEPMPENLKKVLLPDAPRRPTRPSRRRKDVVASCTFNKMRVRVRRKCLGSRALSSELSLGTCSVSNQTDNFFFFCYNVSQCGSNTTMINNRVVYSNTLHFTPEAPKSLIRTAVPFSLPIFCHYNRFHYSYKIGYLPEIKTHQFFKSMQPSSDFTLSACNARWERLPAARGYVIGSPMYFEARSPPVSRDQRLFVSFCYATPSRELAGALRFAVIENSGCMSHNNGAGSRSRFVRHKRDVLRFEVEAFVFEGVADERLYMHCEMFVANHFATEIAKSCTYNSTTGRWEELYGDTQVCTCCNSTCISSASAAELPATKKIVTSGSWVLEPDSGAVLGEATVEWDKPPRPETKSVTEALAIVTEPEIRRWTEPETTIETDPEIMRWTEPETTIETDSEIMRWPEPETTIETDSEIMRWPEPETTIETDSEIMRWPEPETTIETDSEILRWTEPETTMVTEPEIRRLTEPKATMVTETEIRRLTEPKATMVTEPEIRRWTQPKATMVTEPVTPPEVKRWPDKVPKGKPVKGSAVKEAEKGSVPRLSFKEVFGIP"
misc_feature 258..992 /gene="zp3d.2" /note="Zona pellucida-like domain; Region: Zona_pellucida; pfam00100" /db_xref="CDD:425464" misc_feature 1077..1412 /gene="zp3d.2" /note="Procyclic acidic repetitive protein (PARP); Region: Trypan_PARP; pfam05887" /db_xref="CDD:368653" ORIGIN
cagagttccccacacgagggtttcttgggcgatgggacgggattgaaaacaagaatcagactccgcttccgtggccatacctttctcttccaatgttccagcactcgatcgctcctcttgtaaataaagagctaatgaagcccactcgcgcgaccgggcacgagcccatgcctgaaaatttaaaaaaggttttgcttcccgatgctccgcgtcgcccgaccagaccctcccgcagacgcaaggatgtggttgcatcgtgcaccttcaacaaaatgcgcgtcagagtccgcaggaaatgtttgggctcgagggctttgtcttcggagttgtctcttggaacgtgctctgtcagcaaccaaacggataacttctttttcttttgttacaacgtcagccagtgcggaagtaacacaacgatgatcaacaatcgggtggtgtactcaaacacactgcactttacccccgaagcacccaaatcactcattcggacggccgtgcccttcagtctgccaattttctgccactacaacaggttccactactcctacaagattggatacctgccagagatcaagacgcaccagttcttcaagagcatgcagccgagcagcgacttcacgctcagtgcctgcaacgctcgatgggagcggctccccgcggcgcgcggctacgtcatcggcagccccatgtacttcgaggcccgctcgccgcccgtctccagggaccagaggctcttcgtcagcttctgttacgccaccccgtcccgggagcttgccggtgctctccgcttcgcggtgatagagaactctgggtgcatgtcacacaacaacggcgccggcagccggtccaggttcgtccgtcacaaacgggacgtcctgaggttcgaggtagaagccttcgtcttcgagggagtggcggatgagcgtctctacatgcactgtgagatgtttgtggccaaccattttgcgactgaaatcgccaagtcctgcacctacaactcgacgacaggcaggtgggaggagctatacggcgacacccaggtgtgcacctgctgcaactccacctgcatcagctctgcgtcagcggctgaacttcctgccaccaagaagattgtcaccagcggctcctgggtgctggaacccgacagtggagcggttttgggggaggccactgtggagtgggacaagccgccacgccctgagaccaagtccgtgactgaggcgctggctatagtgaccgagccagagatcaggagatggactgagccagagactacgatagagactgacccagagatcatgagatggactgagcccgagactacgatagagaccgactcagagatcatgagatggcctgagccagagactacgatagagaccgactcagagatcatgagatggcctgagccagagactacgatagagaccgactcagagatcatgagatggcctgagccagagactacgatagagaccgactcggagatcttaagatggactgagccagagactacgatggtgactgagccagagatcaggagattgactgagcccaaggctacgatggtgactgagacagagatcaggagattgactgagcccaaggctacgatggtgactgagccagagatcaggagatggactcagcccaaggctacgatggtgactgagccagtgactcccccagaggttaagaggtggcctgataaggtgcccaaggggaagccggtgaaagggtccgctgtcaaggaagcagagaagggatccgtgcctcgcctgtcattcaaggaagtcttcgggatcccctgactctggtgccttctgttccgtggattttgatttgagccaataaaactttaaaaagggtcagtgtctcatctgtcgttctccacgctcagctcagactccgtgtctgcatttcctccccagtccttctgccgcgactcaagcttccatgtgactgctggtccatgttcccccctctcaggtgcactgctctggaaagtctggatgtgttgtttctcagatttctggaggtttgtggggaaacgtcaaaaacaaatatgtaaatgcgttgaaggtgtttctgggggtctggcctgggaca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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