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2024-04-28 04:37:57, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_035129406            1836 bp    mRNA    linear   VRT 23-OCT-2023
DEFINITION  PREDICTED: Zootoca vivipara vimentin (VIM), mRNA.
ACCESSION   XM_035129406
VERSION     XM_035129406.2
DBLINK      BioProject: PRJNA1028606
KEYWORDS    RefSeq.
SOURCE      Zootoca vivipara (common lizard)
  ORGANISM  Zootoca vivipara
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata;
            Laterata; Lacertibaenia; Lacertidae; Zootoca.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_083287) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Oct 23, 2023 this sequence version replaced XM_035129406.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_963506605.1-RS_2023_10
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 10/17/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1836
                     /organism="Zootoca vivipara"
                     /mol_type="mRNA"
                     /db_xref="taxon:8524"
                     /chromosome="12"
     gene            1..1836
                     /gene="VIM"
                     /note="vimentin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 89 Proteins"
                     /db_xref="GeneID:118091874"
     CDS             127..1512
                     /gene="VIM"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_034985297.2"
                     /db_xref="GeneID:118091874"
                     /translation="
MSTTSSSRSSYRRMFGGGGRPSSSSSGSRYVTSSSRYSLGSARPSSIRLSSAPGGGGVYSSKAVRLRSSLPPMRLLGDGGMDFSLADAINTEFKANRTNEKAELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGKGTSRLGDLYEEEMRELRRQVDQLTNDKARVEVDRDNLAEDIMRLREKLQDEMLQREEAENNLQSFRQDVDNASLNRLDLERKVESLQEEIIFLKKLHDEEIRELQAQIQEQHIQIDVDVAKPDLTAALRDVRQQYESVASKNLQEAEEWYKSKFADLSEAASRNNDALRQAKQEANEYRRTIQSLTCEVDALKGTNESLERQMREMEENFNLEAANYQDNIARLQDEIQNMKEEMSRHLREYQELLNVKMALDIEIATYRKLLEGEESRITMPIPTFASLNLRETNLESIPIDTHSKRTLLIKTVETRDGQVINETSHHDELE"
     polyA_site      1836
                     /gene="VIM"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
ggagcccgctcggccgctctcccacacctcttccacccgctgcgcgcaccggctgcccttctcgacggcgctgctctctcgctctctccctgggattgcccaccttcctcttctgggattacaaccatgagtaccaccagcagcagccggagttcctaccgccgcatgttcgggggcggcgggcggcccagctcttcgagcagcgggagccgctacgtgacgtcgtcgagccgctactcgctgggcagcgcccggcccagcagcatccgcctgtcgtcggcgcccggtggcggcggggtctactcctccaaggccgtgcgcctgcggagcagcctgccaccgatgcggcttctgggcgatggcggcatggacttctctctggccgacgccatcaacacggagttcaaggccaaccgcaccaacgagaaagccgagctgcaggagctcaacgaccgcttcgccaactacatcgacaaggtgcgcttcctcgagcagcagaacaagatcctgctggccgagctcgagcagctcaagggtaaaggcacgtcccgcctgggcgacctctacgaggaggagatgcgcgagctgcgccggcaggtggaccagctcaccaatgacaaggcccgcgtggaggtggaccgcgacaacttggccgaagacatcatgcgcctgcgggaaaaacttcaagatgagatgcttcagagggaagaagctgagaacaacctgcaatctttcagacaggatgttgacaatgcctcattgaaccgtctggatcttgaacgcaaagttgaatctctgcaagaagagattatcttcttgaagaagctccatgatgaggaaatccgtgagcttcaggcccagatccaagaacaacatatccagatcgatgtggatgttgccaaacctgatctcactgctgccctgcgcgatgtgcgtcaacagtacgaaagtgttgcttctaagaacctccaggaagctgaagagtggtacaagtccaaatttgcagatctgtccgaagcagcctcccggaacaatgatgccctgcgccaggccaaacaagaagcgaatgagtaccgcaggacaattcagagtctcacctgtgaagtggatgcacttaaaggaactaacgaatccctggaacgccagatgcgtgagatggaggagaactttaaccttgaagctgctaactaccaagacaacattgcccgactgcaggacgagatccaaaacatgaaggaagaaatgtctcgccatctgcgcgagtaccaagaactgctgaatgtaaagatggctcttgatattgagattgccacttacaggaagctgctggagggagaagagagcagaatcacaatgcccattccgacttttgcttccctgaacctgagagaaacaaaccttgagtctatcccaattgacacccactccaagagaacacttcttatcaagactgttgaaactagagatggacaagttatcaatgaaacttctcaccatgatgaactggagtgaagaagagagcagcacatcttccttgtgccgaaacgaacccttaccagcaaaactaaaaaaagagaaacagcttttcaagtgcctttctgcagttttttccaagaacgcaaggtggttatgctagaagatataggtcttagagcatgcaaaactgactctcttgatgggttagaagagcttaaaaaaagggagtctagttcagatagcactatcttgtgctgcaatactgttgtttttttaagtttctgaattgaataaaactgctttttcagcacagtatgatgagcaacctctcactgcttcaataaacatttgggaaattgc
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]