2024-05-06 11:57:58, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_035118315 6669 bp mRNA linear VRT 23-OCT-2023 DEFINITION PREDICTED: Zootoca vivipara protein argonaute-1 (LOC118086560), transcript variant X1, mRNA. ACCESSION XM_035118315 VERSION XM_035118315.2 DBLINK BioProject: PRJNA1028606 KEYWORDS RefSeq. SOURCE Zootoca vivipara (common lizard) ORGANISM Zootoca vivipara Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Zootoca. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_083281) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Oct 23, 2023 this sequence version replaced XM_035118315.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963506605.1-RS_2023_10 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 10/17/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6669 /organism="Zootoca vivipara" /mol_type="mRNA" /db_xref="taxon:8524" /chromosome="6" gene 1..6669 /gene="LOC118086560" /note="protein argonaute-1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 69 Proteins" /db_xref="GeneID:118086560" CDS 140..2719 /gene="LOC118086560" /codon_start=1 /product="protein argonaute-1 isoform X1" /protein_id="XP_034974206.1" /db_xref="GeneID:118086560" /translation="
MEAGPSGAATAAGTYLPPLQQVFQAPRRPGIGTVGKPIKLLANYFEVDIPKIDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWMAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 245..637 /gene="LOC118086560" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 665..817 /gene="LOC118086560" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 818..1180 /gene="LOC118086560" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(974..976,1019..1021,1061..1063,1073..1075, 1127..1129,1148..1150,1154..1156) /gene="LOC118086560" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1313..2590 /gene="LOC118086560" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1724..1726,1736..1738,1772..1783,1790..1792, 1814..1816,1823..1825,1835..1837,1847..1849) /gene="LOC118086560" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1928..1930,1934..1936,2144..2146,2558..2560) /gene="LOC118086560" /note="active site" /db_xref="CDD:240015" polyA_site 6669 /gene="LOC118086560" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ggctgcagcagcgcgagcggcgccctggtcccggcgcgcgctcgcgggcatcactcagccccccctcccccaccgcgtccgccgcttcgactttctctctttcccccgctaggctcggggcgacgcccgcgtggatgggatggaagcaggaccctcgggagcagcaaccgctgcaggcacttatctgccacccctgcagcaggtatttcaagctcctcgccggcccgggataggaactgtcgggaagccaatcaaactcttagccaactactttgaagtagacattcccaagattgacgtctatcactatgaagttgacatcaagccagacaagtgcccacgcagagtcaacagggaggttgtggaatacatggtacaacacttcaaacctcaaatctttggagatcggaagccggtgtacgatgggaaaaagaacatctatacggtcactgccctgcccattggcaatgaaagggttgactttgaggtgacgattccaggggaaggcaaagacaggatattcaaggtttcaatcaagtggatggccattgtgagctggcggatgcttcacgaggccctggtgagcgggcagattcctgttccgctggaatctgtccaagcccttgatgttgccatgaggcacctggcctccatgaggtacacgccagtgggccgttccttcttctctcctcctgaagggtactatcacccgctgggaggtggtcgggaggtctggtttgggttccaccagtctgtcaggcccgctatgtggaagatgatgctgaatattgatgtatcagcgacagccttctacaaggcccagccagtgattgagttcatgtgtgaggtgctggacatccggaacattgatgagcagccgaagcccctgactgattctcaaagagtccgtttcaccaaggagatcaaaggtttgaaagtggaggtgactcattgtggacagatgaagaggaaataccgtgtgtgtaacgttactcggaggccggctagccaccaaacgttccctctccagctggagagcggtcagacggtggagtgcacagtagcgcagtacttcaagcagaaatacaacctccagctcaagtacccccacttgccatgtcttcaagtcggccaagagcagaagcacacatatctacctctggaggtatgtaacattgtggctggccagcggtgcattaagaaactaacggacaatcagacctccaccatgatcaaagcaacagcgaggtctgccccggataggcaagaggagattagccggctgatgaagaacgccagttataacctggatccatacatacaggagtttggcataaaggtgaaggatgacatgactgaagtgactgggcgtgtcctgccagccccaattttacagtatggaggacggaaccgtgccatcgccacacccaaccagggggtatgggacatgagggggaagcagttctacaatggcattgagatcaaagtctgggccatagcctgtttcgccccccagaagcaatgcagggaagaagttctgaagaactttacagaccagctacgcaagatctccaaggatgcagggatgccaatccagggccagccgtgtttctgcaaatatgcacaaggtgcggacagtgtggagcccatgttccgtcaccttaagaacacctattcggggctccagctcatcatagtcatcctgccagggaagacgccggtgtatgcggaggtaaagcgtgtgggggacacgctcctggggatggctacccagtgcgtgcaggtcaagaatgttgtgaagacatcgccacagactctttccaacctctgcctcaagatcaatgtcaagctcggcgggatcaacaacatcctggtgcctcaccagcgatctgctgtctttcaacagccagtcatattccttggagctgatgtgactcatcccccagcaggcgatggaaagaagccttccataacagctgtggtgggcagtatggatgcccacccaagccgttactgtgccactgtgcgggttcagcggccccggcaggagatcatagaggacctgtcgtacatggtgagagagctcctcatccagttttacaagtccactcgcttcaaacccacccgcatcatcttctaccgtgatggagtgccggagggacagctcccacagatccttcattatgagctcctggccatccgtgacgcttgcatcaaattggagaaggactaccagccaggcattacttacattgttgtacagaaacgacaccacactcgcctcttctgtgcagataagaatgagaggatcggtaaaagtgggaacattccagcaggaacaacagtggatacaaacattactcatccatttgagtttgacttctacctgtgtagtcatgctggcattcagggtacaagcagaccttcccattattacgttctttgggatgacaaccggtttacagcggatgagcttcagattctcacctaccagctttgccacacttacgtacgctgcactcgctcagtctctatcccagcaccagcatactatgcccgcttggtggcatttcgggcgcgatatcaccttgtggacaaagagcatgacagcggagaaggcagtcacatatctggccagagtaatggtcgagaccctcaggccctcgccaaggccgtacaagttcatcaggacactttacgtaccatgtactttgcttgaaagtataactttttttacctcactccagaaagctttcagatttgtaggagccataatttaaaaagaggaagcattgggagcaccttatgggcatccaatgagaaatcactgcagggcgcagatggcgttggaggcaggaaaccagcatcctctggaatgaatgcaggagagccacttaaccggttgaacacacctttgtagtctttgtttttcaggctttctagttacctgaccaaacacactaagtatttaaaccatggaagagatctgacttcctgttaagaaaaaaacaaaacggttttcactattgggatggggcggggggggggcgcaatattagactatctcgactgtgaaataacttttttggttctccaatgccaaatccaaacgctggtaagatttttgtttgttattgtttgggatgggtgggggaaatgggatttgtagagccttaaaacagatgactagatttataaaaactaatattttaggatacaagatgctttaattggtgaagaagaagaaaaagccagtagtttatagattaattttaacactcttacccttccctatgaagaaattttctcccctttatatataataataataaataaataaaataataataataataaataataataatgtaaggcacccccagcacttaccacaatgccgaaaaggaaacttgtcttccgcctgtttaaaagtgggatagctgctgcccttttaatgcagcagtcacatactcaaatgtgggcgagtgccttactgcaatgctgcaaaatgttgatgttcgttcacctttcaaaggaacagaaaagcaaaccaaggatactcttgtctcggtggtggtccaaaaaaatctccatcttgaaggtattaggagttctttttttttttaaatgttcacacaaagctttcattttcatgttagcctcacagcctcacgatgggttaaaattctgtgcacttttaacatgacatatgaatttggagagctgctgataaaacctgtttttgttcttttgtttttatttgatgttgatttaattgttcttgatgtatttcttgagtggaattttttttaaaaaaatttaatttaaaaactacatttctaacaaacggggttttgcaagaagaagaatgtttttgcctgccccatgagcacaaacaagaaactccattatcaattgatgtcctgacttttttttatatgccggtgaaattttttattaccaagtgttatttttatacggtgccaagtcttattgccaaaacttactcaaatcacttatatcttctcagcatttacatcacaatattcccccagcagccacctcatactttggagttttcctatagcatatgtggtgggttgtgttaagagatttttgcttgctttggcagcatgtgtactaaaaggcaagtgatagagattagcgagaggctggctgcttttccattaattgagctgcaatccacaaaatcttttatttctaaagtttcattctatttttcctttacagttttataatagttttaggtccagcatgttctcaaaactgccctgatggtttctgctgccaacccccctcccccatgcaaataaacaaaaacccacttggctcttccttggatcagaacaacaacatcatgcactttgctctatctatgtagacatagttcgtattcacaagacaaatctattctgtccccccgtgatgatgaatttcaaacttcctacaagaagctacttgtgctttcaaggctggaggttctctgtcatattctgttacggacacattcttgccattttagtacaaaagcaggcatgtggtgagagaaggaaatgtcacctatactcaagccacattgtcttttcagattattatcttaaactgccaaaatcttttttttaaaaaaaggaaggttgaacctgtgcagccatgccactctctttataggcacaccctgttaaagcatattctttgcagcttgtgaggcaatactgattttaccactcaagcatcaagtgtcaagtcaggtatcccatcctttttattttcactcctccatcccatccccttctctctccaattgccattttgggggcagaatgttaacccatcataatgggttgcataatgctatgcaaaaaacaaaaaaaatgggccacagaatggagcactgttgtgttttacattacttgggcattatggctcatattctttagcctggtcccaaagaactgctgtaggaatgcttgtgtgcagctgctgagatttctgaccttgagcatcagatctccacttcatatcacaactggcttttagcatttccccaggttccagaatggttcacctgctttacttgggaagatgtgtgcctgcttactggtttttgaagcacaagtccaatgcactattggctgcacacagtgagttatgcagttctttggatctttgactcctctctttccccgctggtttcctttttcctctcactcagctgctttgtatcccgcaaggctgggaattgctttgctttgggcagagtccggtcagcaaaagcatcagtctggaaaagctgatcttcttaaccaagtgcctgcatgggtaaacacattatcatcttccagcatgaacctagattatgagccctgtgtttttcagaaagagatgttggggagtcccccctcttacttgggcttgtgagtgagaatgattttatttatagaagcagctttttgagttctttgcatccccttcatgtcctctgcgcctctgtctctgtgcttggagtgggatttgtaagttcagtcaccagcattgcaactaaaatatttggtccaagattcagaagcgttttgagcaaaaatgacttgggcattttcagaacctggggggtgggggagatggagggaatctgagaaatattcagctttgtttaaaaaaaattgctttaaaacaaacacaaacctccaggacttgaattgttatcagatatttgcactccgctgttaagtagctgctttgaatgaattggtgttggcatgacctaatgagacaggcagctagggcaggctttgccaacctggtgctctccagttgttttacactgctttgagttgcctggggagtgcaaatcatctagaaggcacaaggttgctgaaggttgagctagaagaaacatacctgtttcaaagcgctttctggcccatccttcacttctccctcccacccacctggtgcatgcggaattttcactaagtgccgtaaatgatgtcattgctgcaccctctattgaacaaagtttctgggttcggggtatttcccctcccccctttagatgttctacttaatgagttagatcttcctgcatgttctgtgtaatggaggctccctgttccattcccgcttaggtttggcaaagctgtatattatatcctcttgatagtccacgagagcacatagcaggaggtggcattctttcttttgtaccacagactgtgtccactttgggggcgttgcaaggctaccaataagatatttgaatacgcattttggagcatttaaccttgcaccttaagtctgtttcttgtcactatgttgcccttctgcagctgaaaatgttgccaaattctcactttgtgtgtgtgtgtgtgtgtgtgtttgcatttgcatttgcgtgagggtttgggaggcagcataattatgtagctatctgttgttggctcttgttttttattttacctgcactgctgctagttccaatttaatgcttatatttgagcaaaagacactgggctgggtggaagaggatggtgaagaaggcaagaacctgtgccacaaaagattgcacggagcagtacaaaaactggactgggattcaaggtggcccttaggtttgtgccaaggggcttatatgagcccagtggaatattt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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