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2024-03-29 16:49:21, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_035019111            3617 bp    mRNA    linear   MAM 10-JUN-2020
DEFINITION  PREDICTED: Mirounga leonina protein argonaute-3-like
            (LOC118019694), transcript variant X3, mRNA.
ACCESSION   XM_035019111
VERSION     XM_035019111.1
DBLINK      BioProject: PRJNA638103
KEYWORDS    RefSeq.
SOURCE      Mirounga leonina (Southern elephant seal)
  ORGANISM  Mirounga leonina
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia;
            Pinnipedia; Phocidae; Mirounga.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_023270447.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Mirounga leonina Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3617
                     /organism="Mirounga leonina"
                     /mol_type="mRNA"
                     /isolate="KUSES-001"
                     /db_xref="taxon:9715"
                     /chromosome="Unknown"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /country="Antarctica"
     gene            1..3617
                     /gene="LOC118019694"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 3 ESTs, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:118019694"
     CDS             1415..3295
                     /gene="LOC118019694"
                     /codon_start=1
                     /product="protein argonaute-3-like isoform X3"
                     /protein_id="XP_034875002.1"
                     /db_xref="GeneID:118019694"
                     /translation="
MCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
     misc_feature    1415..1756
                     /gene="LOC118019694"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1550..1552,1595..1597,1637..1639,1649..1651,
                     1703..1705,1724..1726,1730..1732)
                     /gene="LOC118019694"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1889..3166
                     /gene="LOC118019694"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(2300..2302,2312..2314,2348..2359,2366..2368,
                     2390..2392,2399..2401,2411..2413,2423..2425)
                     /gene="LOC118019694"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2504..2506,2510..2512,2720..2722,3134..3136)
                     /gene="LOC118019694"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
gtaagagatggtgatggtctaatgtgggatggagagaaaggaaccatattataaggaataagttgaaacagtaggtttaagaaccatgtccagaaaaactttgggtatagttactggcacatggacctgagtggaaatgaatagaccagaaggtttactaggtttttgaaggaattgtttttggaaataaacttataaacctggtatatttgtcaggttcaaccacagaagcagaaccagtaggagatctaaagagagagagagagatttggtttacacagttgtaggggctagcgaggcaagtctgaaatctgtagaatagattgtcaggaagcgcagactgggactcgtgggcatgggctgaagctgctgttcataggtggaagttctcctctgtctctcttggggaagaaccagccctgctgtaaggcctttcaactgactgaacaaggcccacccaaattatccaggatgatctcctttacttagtcaactggttatggattttaattacatctataaaacactttcacagcattacctagattaatgtttgaatagctaacaactagtagcccagccaagttgatgcattaaaacaaaagtatacctggcctgcaaagttattcactctttgaaacaatcttcatgttcccaacccttcaggctcagtgactgtgttatattataaactagcttccaagaagggcatattcaccaacatataatcagaatagtgactcattcataccaggtgtgaatggtaattctgtcaattgaattgctattgctggttagttgtcagtacataccatatataaatagatcaaatattaatatgtccaaagcttgaagatcttctgggacatatggatagagactataatatatagttggaaatgcagatatgaaaatctgtagtggtgggagctagaagtagaagtttgggaactcttcagtatataagttcatatttgaaactgtagaaatggaaaaacttctttaggaatagtatttaaataaaacaggaatgaggaggataaagccatggggaatactagcatttaaggaaggaagaagaccagtgagcagttaatgattatcacaggcagtatgagagccaaaaaatggtgtcagggaagccaagggaggcaatatattcaaaaagtagatgatttcacagttaagcagtgggaacttttccagtaaaatctagaataaagcaaggatgtcaggactatgatattttagttattttgtgtttgctaacttctgttcttcttacaggtttcagtctacatgttacttccttgagaagcagtatttgaacccttctccccctcccacatccagccatcccccaagtctcatttctgccactgccttctacaaagcacaacctgtaattcagttcatgtgtgaagttcttgacattcataatattgatgagcaaccaagacctctgactgattctcatcgagtaaaattcaccaaagagataaaaggtctgaaggttgaagtgactcattgtggaacaatgagacggaaataccgtgtttgtaatgtaacaagaaggcctgccagtcatcaaacctttcctttacagttagaaaatggccaaactgtggagagaacagtagcacagtattttagagaaaagtatactcttcaactgaagtacccacatcttccttgtctgcaagtggggcaggaacagaagcatacctacctgccactagaagtctgtaatatcgtggcagggcaacgatgtattaagaagctaacggacaatcagacttccactatgatcaaagcaacagcaagatctgcgccagatagacaagaggaaattagcagattggtaagaagtgcaaattatgaaacagatccatttgttcaggagtttcaatttaaagttcgggatgaaatggcccacgtaaccggacgtgtacttccagctcccatgctgcagtatggaggacggaatcggacagtagcaacaccaagccatggagtatgggacatgcgggggaagcagtttcacacaggagtggagataaagatgtgggccatcgcttgcttcgccacgcagaggcagtgcagagaagagatactgaagggtttcacggaccagctgcgtaagatttctaaagatgcagggatgcccatccagggccagccttgcttctgcaaatacgcgcagggggcagacagcgtggagcccatgttccggcatctcaagaacacctactctgggctacagctcattattgtcatcctgccaggaaagacaccagtgtatgcggaagtgaaacgtgtaggagatacacttttgggtatggccacacagtgtgtccaagtcaagaatgtaataaaaacatcccctcaaactctctcaaacctgtgcctaaagataaatgttaaactcggagggatcaataatattcttgtacctcatcaaagaccttctgtgttccagcaaccagtgatctttttgggagcagacgtcactcatccaccagctggtgatgggaagaagccttcgattgctgctgttgtaggtagtatggatgcccacccaagcagatactgtgccacagtaagagttcagagaccccgacaggagatcatccaggacttggcctccatggttcgagaacttctcattcagttttataaatcaactcggttcaaacctactcgtatcatcttttatcgggatggtgtttcagaaggacagtttaggcaggtattatattatgaactactagcaattcgagaagcctgcatcagtttggagaaagactatcaacctggaataacctacattgtagttcagaagagacatcatactcgattattttgtgctgacaggacagaaagggttggaagaagtggcaatatcccagctggaacaacagttgatacagatattacacacccatacgagttcgatttttacctctgtagccatgctggaatacagggtaccagccgtccttcacactatcatgttttatgggatgataactgctttactgcagatgaacttcagctgctaacttaccagctctgccacacttatgtgcgctgtacacgatctgtttctatacctgcaccagcgtattatgctcacctggtagcattcagagccagatatcatctcgtggacaaagaacatgacagtgctgaaggaagtcacgtttcaggacagagcaacggacgagatccacaagctcttgccaaggctgtacagattcaccaagataccttacgcacaatgtactttgcttaaaaagtccaagaatattctctgagaggaagaactgaaaggtgcatcgacatacagcatatgtttccagtggagtcagttgagtggggatgcctccagccatacagcagccaacactgtgtggggaccagtgtctgatttttatgttgatacaaggaagattgtttacttcatcaaggaacacagcaccattatgcaatatgaaaccagccaactgcttttttgtgcggtctccttaggaagtatcgccattgttttgttttcactttcttgtagtctaacccttttaatgcctttacctcaagttgcttggcagcacaactat
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]