2024-03-29 16:49:21, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_035019111 3617 bp mRNA linear MAM 10-JUN-2020 DEFINITION PREDICTED: Mirounga leonina protein argonaute-3-like (LOC118019694), transcript variant X3, mRNA. ACCESSION XM_035019111 VERSION XM_035019111.1 DBLINK BioProject: PRJNA638103 KEYWORDS RefSeq. SOURCE Mirounga leonina (Southern elephant seal) ORGANISM Mirounga leonina Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Mirounga. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023270447.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mirounga leonina Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3617 /organism="Mirounga leonina" /mol_type="mRNA" /isolate="KUSES-001" /db_xref="taxon:9715" /chromosome="Unknown" /tissue_type="blood" /dev_stage="adult" /country="Antarctica" gene 1..3617 /gene="LOC118019694" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 3 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:118019694" CDS 1415..3295 /gene="LOC118019694" /codon_start=1 /product="protein argonaute-3-like isoform X3" /protein_id="XP_034875002.1" /db_xref="GeneID:118019694" /translation="
MCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
misc_feature 1415..1756 /gene="LOC118019694" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1550..1552,1595..1597,1637..1639,1649..1651, 1703..1705,1724..1726,1730..1732) /gene="LOC118019694" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1889..3166 /gene="LOC118019694" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2300..2302,2312..2314,2348..2359,2366..2368, 2390..2392,2399..2401,2411..2413,2423..2425) /gene="LOC118019694" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2504..2506,2510..2512,2720..2722,3134..3136) /gene="LOC118019694" /note="active site" /db_xref="CDD:240015" ORIGIN
gtaagagatggtgatggtctaatgtgggatggagagaaaggaaccatattataaggaataagttgaaacagtaggtttaagaaccatgtccagaaaaactttgggtatagttactggcacatggacctgagtggaaatgaatagaccagaaggtttactaggtttttgaaggaattgtttttggaaataaacttataaacctggtatatttgtcaggttcaaccacagaagcagaaccagtaggagatctaaagagagagagagagatttggtttacacagttgtaggggctagcgaggcaagtctgaaatctgtagaatagattgtcaggaagcgcagactgggactcgtgggcatgggctgaagctgctgttcataggtggaagttctcctctgtctctcttggggaagaaccagccctgctgtaaggcctttcaactgactgaacaaggcccacccaaattatccaggatgatctcctttacttagtcaactggttatggattttaattacatctataaaacactttcacagcattacctagattaatgtttgaatagctaacaactagtagcccagccaagttgatgcattaaaacaaaagtatacctggcctgcaaagttattcactctttgaaacaatcttcatgttcccaacccttcaggctcagtgactgtgttatattataaactagcttccaagaagggcatattcaccaacatataatcagaatagtgactcattcataccaggtgtgaatggtaattctgtcaattgaattgctattgctggttagttgtcagtacataccatatataaatagatcaaatattaatatgtccaaagcttgaagatcttctgggacatatggatagagactataatatatagttggaaatgcagatatgaaaatctgtagtggtgggagctagaagtagaagtttgggaactcttcagtatataagttcatatttgaaactgtagaaatggaaaaacttctttaggaatagtatttaaataaaacaggaatgaggaggataaagccatggggaatactagcatttaaggaaggaagaagaccagtgagcagttaatgattatcacaggcagtatgagagccaaaaaatggtgtcagggaagccaagggaggcaatatattcaaaaagtagatgatttcacagttaagcagtgggaacttttccagtaaaatctagaataaagcaaggatgtcaggactatgatattttagttattttgtgtttgctaacttctgttcttcttacaggtttcagtctacatgttacttccttgagaagcagtatttgaacccttctccccctcccacatccagccatcccccaagtctcatttctgccactgccttctacaaagcacaacctgtaattcagttcatgtgtgaagttcttgacattcataatattgatgagcaaccaagacctctgactgattctcatcgagtaaaattcaccaaagagataaaaggtctgaaggttgaagtgactcattgtggaacaatgagacggaaataccgtgtttgtaatgtaacaagaaggcctgccagtcatcaaacctttcctttacagttagaaaatggccaaactgtggagagaacagtagcacagtattttagagaaaagtatactcttcaactgaagtacccacatcttccttgtctgcaagtggggcaggaacagaagcatacctacctgccactagaagtctgtaatatcgtggcagggcaacgatgtattaagaagctaacggacaatcagacttccactatgatcaaagcaacagcaagatctgcgccagatagacaagaggaaattagcagattggtaagaagtgcaaattatgaaacagatccatttgttcaggagtttcaatttaaagttcgggatgaaatggcccacgtaaccggacgtgtacttccagctcccatgctgcagtatggaggacggaatcggacagtagcaacaccaagccatggagtatgggacatgcgggggaagcagtttcacacaggagtggagataaagatgtgggccatcgcttgcttcgccacgcagaggcagtgcagagaagagatactgaagggtttcacggaccagctgcgtaagatttctaaagatgcagggatgcccatccagggccagccttgcttctgcaaatacgcgcagggggcagacagcgtggagcccatgttccggcatctcaagaacacctactctgggctacagctcattattgtcatcctgccaggaaagacaccagtgtatgcggaagtgaaacgtgtaggagatacacttttgggtatggccacacagtgtgtccaagtcaagaatgtaataaaaacatcccctcaaactctctcaaacctgtgcctaaagataaatgttaaactcggagggatcaataatattcttgtacctcatcaaagaccttctgtgttccagcaaccagtgatctttttgggagcagacgtcactcatccaccagctggtgatgggaagaagccttcgattgctgctgttgtaggtagtatggatgcccacccaagcagatactgtgccacagtaagagttcagagaccccgacaggagatcatccaggacttggcctccatggttcgagaacttctcattcagttttataaatcaactcggttcaaacctactcgtatcatcttttatcgggatggtgtttcagaaggacagtttaggcaggtattatattatgaactactagcaattcgagaagcctgcatcagtttggagaaagactatcaacctggaataacctacattgtagttcagaagagacatcatactcgattattttgtgctgacaggacagaaagggttggaagaagtggcaatatcccagctggaacaacagttgatacagatattacacacccatacgagttcgatttttacctctgtagccatgctggaatacagggtaccagccgtccttcacactatcatgttttatgggatgataactgctttactgcagatgaacttcagctgctaacttaccagctctgccacacttatgtgcgctgtacacgatctgtttctatacctgcaccagcgtattatgctcacctggtagcattcagagccagatatcatctcgtggacaaagaacatgacagtgctgaaggaagtcacgtttcaggacagagcaacggacgagatccacaagctcttgccaaggctgtacagattcaccaagataccttacgcacaatgtactttgcttaaaaagtccaagaatattctctgagaggaagaactgaaaggtgcatcgacatacagcatatgtttccagtggagtcagttgagtggggatgcctccagccatacagcagccaacactgtgtggggaccagtgtctgatttttatgttgatacaaggaagattgtttacttcatcaaggaacacagcaccattatgcaatatgaaaccagccaactgcttttttgtgcggtctccttaggaagtatcgccattgttttgttttcactttcttgtagtctaacccttttaatgcctttacctcaagttgcttggcagcacaactat
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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