2024-05-06 12:48:27, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_034436040 3908 bp mRNA linear VRT 03-NOV-2023 DEFINITION PREDICTED: Pantherophis guttatus argonaute RISC catalytic component 2 (AGO2), mRNA. ACCESSION XM_034436040 VERSION XM_034436040.1 DBLINK BioProject: PRJNA1031231 KEYWORDS RefSeq. SOURCE Pantherophis guttatus ORGANISM Pantherophis guttatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Colubridae; Colubrinae; Pantherophis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_026844077) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_029531705.1-RS_2023_10 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 10/30/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3908 /organism="Pantherophis guttatus" /mol_type="mRNA" /isolate="1" /db_xref="taxon:94885" /chromosome="Unknown" /sex="male" /tissue_type="blood" gene 1..3908 /gene="AGO2" /note="argonaute RISC catalytic component 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 43 Proteins" /db_xref="GeneID:117676521" CDS 32..2638 /gene="AGO2" /codon_start=1 /product="protein argonaute-2" /protein_id="XP_034291931.1" /db_xref="GeneID:117676521" /translation="
MYPAGGAAPGAAAGPVLTTPPSLPPPMQAYAFKPPPRPDFGTSGRTIKLQANFFEMDIPKMDIYHYELDIKPEKCPRRVNREIVEHMVQHFKAQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKDRIFKVAIKWMSVVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPFVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKTFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPSEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA"
misc_feature 299..556 /gene="AGO2" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 584..736 /gene="AGO2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 737..1099 /gene="AGO2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(893..895,938..940,980..982,992..994,1046..1048, 1067..1069,1073..1075) /gene="AGO2" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1232..2509 /gene="AGO2" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1643..1645,1655..1657,1691..1702,1709..1711, 1733..1735,1742..1744,1754..1756,1766..1768) /gene="AGO2" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1847..1849,1853..1855,2063..2065,2477..2479) /gene="AGO2" /note="active site" /db_xref="CDD:240015" polyA_site 3908 /gene="AGO2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
cgcctcccacgcagcccggcgctcggccgccatgtacccggccgggggagccgcccccggggccgccgcgggacccgttcttacaacacctccatcactgccacctccaatgcaggcatatgcatttaaacctccccctcgaccagattttggtacttcgggaagaacaatcaaactgcaagccaatttctttgaaatggacatccccaaaatggacatctatcattacgaattggatataaagcctgagaaatgtcctagaagagttaacagagaaatagttgagcacatggtgcagcactttaaagcccagatctttggagatcgcaagccagtatttgacgggagaaaaaatctctacaccgcaatgccgcttccaatagggagagataaagtggaattggaggtcacgttgccaggagaagggaaggaccgaatattcaaggtagccatcaagtggatgtcggttgtgagtcttcaggcattgcacgacgctctctccggtcgtcttccaagtgttcctttcgaaaccattcaagctcttgacgtggtgatgaggcacctgccctccatgagatatactccagtgggccgatctttttttactgcatccgaaggatgttcgaatcctctgggaggtggcagagaagtctggtttggattccatcagtcagtcaggccttccctgtggaaaatgatgctgaacattgatgtctctgcaacagcattttataaggcccagccagtgattgaatttgtatgtgaagttcttgatttcaaaagtattgaagaacaacagaaacctctgacagattcccaaagggttaagtttaccaaagaaattaaaggtcttaaggtggaaatcactcactgtggacaaatgaaaagaaaataccgagtatgcaacgttacgagaagaccagcaagtcaccaaacatttcctcttcagcaggagagtggccagactgttgaatgcactgtagctcaatattttaaggacaggcacaaattggtattacgctatcctcaccttccatgtttacaagttggacaggagcagaaacatacgtaccttcccttagaggtatgcaatatagttgcaggacagagatgtattaagaagctgacagacaatcaaacttctactatgattagagccacggcgagatcagccccagatcgtcaggaagagatcagcaaattgatgcgaagtgcaagttttaataccgaccctttcgttcgtgagtttggcatcatggtgaaagatgaaatgacggatgtcactgggagagtgttacagccaccttcaattctctacggaggccggaacaaagcaattgctaccccagtgcagggggtctgggatatgaggaacaaacagtttcatactggaattgaaatcaaggtctgggccattgcgtgtttcgctccccaacgccagtgcactgaagtccatcttaaaaccttcacggaacaactgaggaaaatatccagagatgcaggaatgcccatccaaggtcaaccatgcttctgtaaatatgcccagggagcagacagcgtggaacccatgttccgtcacctgaagaacacctattctggtctgcagcttgtggttgtcattctacccgggaaaactcctgtttatgccgaagtgaagcgtgtcggtgacaccgtgttgggaatggccacgcagtgtgtgcagatgaaaaatgtgcagaggactaccccccagaccctttccaacctatgcttaaagatcaatgtcaaactaggaggagttaataacattttattgccacaaggaaggcctccagtatttcagcagcctgttattttccttggtgcagacgtcactcatccaccagctggagatgggaaaaagccatctattgctgctgttgtaggcagcatggatgcccatccgaaccgctactgtgccactgtgagggtccagcagcaccgccaagaaataattcaagacttggctgccatggttagggagctgctgatccagttttacaaatcaactcgattcaagccaacgcggatcattttctatcgagacggtgtttccgaggggcagtttcaacaggttcttcatcatgaattgctggctatccgagaagcctgcattaaactagaaaaagattaccagccagggattaccttcattgtggtgcagaagaggcatcacaccaggctgttttgcaccgacaaaaatgaaagagttgggaaaagtggaaacattccagcaggtaccactgtggacacaaaaatcacccacccttcggagtttgacttctacctgtgtagtcatgctggtattcagggcacaagcagaccgtctcattaccatgttctctgggatgacaatcgcttctcttcagacgaactccagatcctcacttaccaactgtgtcatacctacgtccggtgtactcgatctgtttctatccctgcgccagcctactatgcacacctggtggccttcagagccaggtatcatttggtggataaagagcatgacagcgccgaagggagccacacttccgggcagagcaacggccgcgatcaccaagctctcgcgaaagctgtccaggtccaccaagatactttgcgcaccatgtactttgcttgacatctggccgtgttgaggaactcagttctgtgttggattcacaagagaccagctgcacttagaccaacagttgcccgagctaccgcgacagccagcaaaggagtgatgcatctttatttttaaatatttgaggggtggggaggggaggagggggctgatgatgatgatgatgattgtgattctatttgcaagaaagcttttcatccagaatttcagacttgagcgtagaaaaaaaaaattgcacagcttttaagacatgtggatatgccaaaatcaaaaagctgcttgtcgggagaaatgaaacaaacaaacaaacaaacaaaaattgaaaacccacgttttctaattaactagagctgtgatctcagggctaaaaacaacacttctcattttagttatgactttttcagatgctcttatttgtaataatctgaagaaatatccaattaagatccgattgaacgggcctgggaggaaaaaagaaatgaatttgcttttatttctttaaaaaaaaaaaagcactagtttggatgccagtgaagtctttgatcattctggatgcatttgtaaagtgattttgtaccgagatgcaaaaagagtgagcgaatcctttgctgtcttattgataagtctgtgaaggtctatgggcaaaaaaaaaaaaaaaatatgtatttttgacgttagttcttgaatgtctttcattgtgctgtttaaaattttttgtaggatgagttacggaattatttcagttacaaaaaagaagttttatctatactttttattaggtccactgaaagattaatgaagtgtgccactttttttaaaaaaaaagtttattttttcttaaaaaaaaaataataataatccattttgattactaatcatggagtttgtcctctaggactgtgacacttaattttccaaagcttttctaaagaatacgggtctgtggtgatacagtacaatctctttcactgttatgtttgaattaatgtaaaatttatatgtgtttcacagtattaacatgatagtatagatgctatttatatttatttactaaagagtgctcaacatagttctgtttaacatatcacaaattgaagaatgctttggagttttaaagtggagagcttttacgtggacgagagggatttgggtcgaattcaccaaccgtagcttttttgcaggttcccttgttcattttaacgaggtttctttattatatctccttgaagtgaacaaaggagaactggacctgatgtgttgtccc
//
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@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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