2024-04-27 12:22:03, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_033952853 4087 bp mRNA linear VRT 28-APR-2020 DEFINITION PREDICTED: Geotrypetes seraphini NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X2, mRNA. ACCESSION XM_033952853 VERSION XM_033952853.1 DBLINK BioProject: PRJNA627137 KEYWORDS RefSeq. SOURCE Geotrypetes seraphini ORGANISM Geotrypetes seraphini Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Geotrypetes. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_047090.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Geotrypetes seraphini Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4087 /organism="Geotrypetes seraphini" /mol_type="mRNA" /db_xref="taxon:260995" /chromosome="7" gene 1..4087 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns" /db_xref="GeneID:117364064" CDS 176..3148 /gene="NRDE2" /codon_start=1 /product="nuclear exosome regulator NRDE2 isoform X2" /protein_id="XP_033808744.1" /db_xref="GeneID:117364064" /translation="
MIIVTYTVYKHMYKRKGNTCLGINPKKQCITWEDSATGKKSLHKRAERYFTKSGVQLLAADGTPVYSRTRATPLWDSTLIPLLEGDEDGKAACPSTAWVNPLGVYDMSTTLWLQGKGLPESEAKYPASSDDLNNTLKAKVEEFNRKLRESPEDVQTWLAFVAFQDELMKGPSMYTIDEKQLESRRKSLRLILEKKLSILDRAIESNPHQVELKLTRLKLCEEFWEPAVLLKEWQKLVFLHPNDAVLWQKYLLFAQSHFSTFSMSKVISTYGKCLSTLAAVQDGSMVSHPLLPGTEEAMSAIFLQQCHFLRQAGQSEKAISLFQAMSDFTFFKPDSVKDMSTKRQVEFFEPFWDSGEPRFGEKGAKGWNAWMRQQERGGWIVVSNFDEEEEEDNAEDEPEIKDKTCPRWRIWLEMECAREAKHWLPWRPDKAKGQSEEDCEDPERQVLFDELGPSLFRISSSELKFQLMCAFLQFLGVPCGCHLPASCLYLAMDENSVFDCGHASERTLTPFDCLSSGVGTLGHMETMVTGRRQTGHPKEGEEFLQNIFRLAQSCFSGEAKSHFLVCWFQYEISKIAWYLRVKDKKHLKSQGKKSKKLAKHLLKEAENRNNLSLWKEYAYLEWLLGNIDDSRKVFDTAISMGKNSGMKNRGLLNLCLLYAELEVGLLNTLEGAVNSRAVHVLTKLADNGPYAPYNGQMFSVSILKARKVYEHAVQDCLQESLSSGLGKPPVQLVSLVGCFALFQYLTVGLDAAVQVFRLFTDKRDSVSVLKAGEFNETPNSWAALETLSAMQTSLLRYHLKMGVHPLNPLRETLREALTLYPGNRFLWQSYVEVESKSHNASKMRRFFDRVRRSTVCLEPWLFAIQAEQARKRLVESVQRKDAGEIHATIPETGLTNRIQALFEHAIGSQQGAHCPLLWRLYLHFMVSLGNKERSKGLFYKALQSCPWAKVLYLDAVEYFPDELQEILDLMTEKELRLRMPLEELDLLLED"
misc_feature <212..>361 /gene="NRDE2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature 599..1603 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
caaatagtgtaaaaaatcacttggtttggctcgaggatattgaatctgtgaatggtgaggccttcagaattgataagaaccctgaccctgctaactgggaatacaagtccctttacagagcacatatagcaaggatgatgattatcgaaatactctgaaaatgtgagctgtttgaatgatcatagtcacatacacagtctataaacatatgtataaaaggaaagggaacacctgtcttggtattaatccaaagaagcaatgtataacttgggaagattctgccactggaaagaaatcgctccacaagcgggcagaacgttactttactaaaagtggggtacagttactcgctgcagacgggactccagtgtatagcagaactcgggctacccccctttgggacagcacactcataccgcttctggaaggggatgaagatgggaaggctgcctgtccatccactgcctgggttaatcccctgggagtttatgatatgtccactacattgtggctccagggaaaggggcttcctgagagtgaagccaaatatccggcttccagtgatgatttaaacaatacactgaaggcaaaggtggaagagttcaaccgcaagctgagagagagtcctgaggatgtccagacttggttggcctttgttgcttttcaggatgaactgatgaagggacccagtatgtacaccatcgatgagaaacagctagaaagcagaagaaagtctctgaggctgatcttggagaaaaaactctcgatcctagacagggccattgagagcaatccgcaccaagtggagctgaagctcacaaggctgaaactgtgtgaagagttctgggagccggctgtgctcctgaaggagtggcagaagttggtgtttctgcatcctaacgatgctgtactgtggcaaaagtatctcctgtttgcccagagccatttcagcaccttttccatgtccaaagtcatcagtacctatgggaaatgtttgagcaccctggcagcagtgcaggatggcagtatggtgtcccaccccctacttccaggcacagaggaagccatgtctgctatcttcctgcagcagtgccacttcctccggcaggcaggccagtccgagaaagccatctccctcttccaggctatgagcgatttcaccttcttcaaacctgacagcgtcaaagacatgtcaacaaagcggcaggtggagttttttgaacctttctgggacagcggagagcctcggtttggggaaaaaggcgccaaaggctggaatgcgtggatgcgtcaacaagaaagaggaggctggattgttgtcagtaactttgatgaggaggaagaagaagataatgcggaggatgaaccagaaataaaggataaaacttgtcctcgatggcgcatctggctggagatggagtgtgcacgtgaagctaaacactggctaccctggagacctgacaaagcaaaaggccagtcagaagaggattgtgaggacccagagagacaggtgttgtttgatgaactgggtccatctttgttccgaatttccagctctgagctgaaatttcagctgatgtgtgcattcctacaatttttgggggttccatgtggatgccatcttcctgcttcctgcttatacctagcaatggatgagaattctgtctttgactgtgggcacgcttctgagaggacactgaccccttttgattgcctgtcctctggagttggcactcttggccatatggagacaatggtcacagggagacgacagacagggcatcctaaggaaggagaggagttcctacagaacattttccggttggcacagtcttgcttctcaggggaggcgaagtctcatttcttagtctgttggtttcagtatgaaatatcaaagattgcatggtatttacgagtaaaagacaaaaagcacctcaagtctcaagggaaaaagagtaaaaagctagcaaaacatcttcttaaggaagcggagaaccgaaacaatctttccctctggaaggaatatgcctacctggagtggctgctgggaaatatagatgattcccgtaaggttttcgatacagccatcagcatgggtaaaaacagcggcatgaaaaaccgcggccttttgaacctgtgtctgctttatgctgaactggaagtggggctgctgaacaccctggaaggagccgtcaactcgcgtgctgtccacgtcctgactaagctggctgacaacggaccctatgcgccttacaacgggcagatgttctcagtcagcattttgaaagcccgtaaggtatatgagcatgcagtgcaagactgtctgcaggaaagtctgtcctctggcctcggaaagcctcctgtccagcttgtgagcttggtgggttgttttgcactcttccagtatttaactgtaggacttgatgctgcagttcaggttttcagactttttactgataaacgggacagtgttagtgtcctgaaagctggagaatttaatgaaacaccaaattcttgggctgcccttgaaacgctttccgcgatgcaaacaagtttactcaggtaccaccttaaaatgggcgtgcaccccttgaatcctttgagagagacactcagggaggctctgaccttgtatcctgggaaccggtttctgtggcagtcctacgtggaagtggaaagtaaatcccacaatgctagtaaaatgaggagattttttgaccgtgtccgaagatccaccgtgtgccttgaaccatggctcttcgcgatccaggccgagcaagccagaaaaaggcttgtggagtcagttcagaggaaagatgcgggagagatccatgcgacaatccccgagacgggcctgacaaatcggatccaagcgttatttgaacatgccattggaagccagcagggggctcactgcccactcttgtggaggctgtatttacatttcatggtttcattaggaaataaagaaagaagtaaaggactgttttataaagcacttcagagctgtccctgggccaaggtgctgtacttggatgcagtcgagtacttccctgatgagctccaggagatcctggatcttatgacggagaaagaactacgtttgcgcatgcctctggaagagctggacttgctgctggaagactgaaaaaaagagaagggggggagggaagaaagaacagaaactggagtgcagcatgacccagacagagcctctgagcttttagaaatgtgctaaaagctcaagtaccttgaattgaaaaaggcaggacaacacagcctggaaggaacagtctgaacgtcgagttcctgcttcccaggaccattgtgttagccagtccatcccactgtgagaaggaaaggacaatagagggggaagtcttccaatgctgaaaactagggtcctggatgttttcagctcggtcttccgacttggtgacatcttgggacagtttatccatgtgcagacacagtgagctgcatttttcgaaaggttctgcttctaccacattgccaaaatgttggttttaaagaacacttcaaaactaacttactgatttacagtgaagccaccgcatgcattgtacaggaatagaacaacatatcagccactttaagtggtagattctgtcattgcagggacacagctttaattctctaattcaatgtaaatatagtgtgtgtgtatttggggggggggagggagggaatgggggtaagggtggagaggttcagcacaatgcactctgaatttcccaagccatgatgagtacaatacaggtgacagagcaggcttcagatcggggagtggataagtagaaatacaaatgaaagaaatgtgttctgtctgccataatccctggtctccttttgctggactgcggttacctactttggggatatacatcttacaattgagcgtctattcttttacatgtggaataaacaggttaaaactgtcatcagactaagggcgacttttaatcacgtgctaaccaaaaagctactgcctgctcaaggcaggcgttagcggctagcggtttaacgcacgctattacgcgcgttaaaccgctagtgtggcttgata
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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