LOCUS       XM_033690076            3352 bp    mRNA    linear   PLN 21-APR-2020
DEFINITION  Lindgomyces ingoldianus putative RNA interference and gene
            silencing protein (BDR25DRAFT_303777), mRNA.
ACCESSION   XM_033690076
VERSION     XM_033690076.1
DBLINK      BioProject: PRJNA625772
            BioSample: SAMN05446602
KEYWORDS    RefSeq.
SOURCE      Lindgomyces ingoldianus
  ORGANISM  Lindgomyces ingoldianus
            Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina;
            Dothideomycetes; Pleosporomycetidae; Pleosporales;
            Lindgomycetaceae; Lindgomyces.
REFERENCE   1  (bases 1 to 3352)
  AUTHORS   Haridas,S., Albert,R., Binder,M., Bloem,J., Labutti,K., Salamov,A.,
            Andreopoulos,B., Baker,S., Barry,K., Bills,G., Bluhm,B., Cannon,C.,
            Castanera,R., Culley,D., Daum,C., Ezra,D., Gonzalez,J.,
            Henrissat,B., Kuo,A., Liang,C., Lipzen,A., Lutzoni,F., Magnuson,J.,
            Mondo,S., Nolan,M., Ohm,R., Pangilinan,J., Park,H.-J., Ramirez,L.,
            Alfaro,M., Sun,H., Tritt,A., Yoshinaga,Y., Zwiers,L.-H.,
            Turgeon,B., Goodwin,S., Spatafora,J., Crous,P. and Grigoriev,I.
  TITLE     101 Dothideomycetes genomes: a test case for predicting lifestyles
            and emergence of pathogens
  JOURNAL   Stud. Mycol. (2020) In press
  REMARK    DOI: 10.1016/j.simyco.2020.01.003
REFERENCE   2  (bases 1 to 3352)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (17-APR-2020) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 3352)
  AUTHORS   Haridas,S., Albert,R., Binder,M., Bloem,J., Labutti,K., Salamov,A.,
            Andreopoulos,B., Baker,S.E., Barry,K., Bills,G., Bluhm,B.H.,
            Cannon,C., Castanera,R., Culley,D.E., Daum,C., Ezra,D.,
            Gonzalez,J.B., Henrissat,B., Kuo,A., Liang,C., Lipzen,A.,
            Lutzoni,F., Magnuson,J., Mondo,S., Nolan,M., Ohm,R., Pangilinan,J.,
            Park,H.-J., Ramirez,L., Alfaro,M., Sun,H., Tritt,A., Yoshinaga,Y.,
            Zwiers,L.-H., Turgeon,B.G., Goodwin,S.B., Spatafora,J.W.,
            Crous,P.W. and Grigoriev,I.V.
  CONSRTM   DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (27-JAN-2020) DOE Joint Genome Institute, 2800 Mitchell
            Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_022985177).
            
            ##Metadata-START##
            Organism Display Name :: Lindgomyces ingoldianus ATCC 200398 v1.0
            GOLD Stamp ID         :: null
            ##Metadata-END##
FEATURES             Location/Qualifiers
     source          1..3352
                     /organism="Lindgomyces ingoldianus"
                     /mol_type="mRNA"
                     /strain="ATCC 200398"
                     /culture_collection="ATCC:200398"
                     /type_material="culture from holotype of Massarina
                     ingoldiana"
                     /db_xref="taxon:673940"
                     /chromosome="Unknown"
     gene            1..3352
                     /locus_tag="BDR25DRAFT_303777"
                     /db_xref="GeneID:54430727"
     CDS             96..3113
                     /locus_tag="BDR25DRAFT_303777"
                     /codon_start=1
                     /product="putative RNA interference and gene silencing
                     protein"
                     /protein_id="XP_033547644.1"
                     /db_xref="GeneID:54430727"
                     /db_xref="InterPro:IPR003100"
                     /db_xref="InterPro:IPR003165"
                     /db_xref="InterPro:IPR014811"
                     /db_xref="JGIDB:Linin1_303777"
                     /translation="

MSNKYRGGGGRQRGGFQGGGGGRSRGDRGGGSRGGYGGPHGGGQQAIQVFSNPQSQDPKVAKVEDALHPTTKKTLNLGSLKLTEDFPSRPGYGTKGAKVELTANYVELLPPSSMILHRYDIQIKPEAAGRKHFRLMQLLLLSTELAAHQGNLATDFRSTLVSKTKFPRNETFIEVQYRSEGEDEPAAGATTYTVRVLYSKTLSTAELIDYLNSTNLGQSFGDKEELTQALNIFLNHYAKSANNLATIGSTKSFSLNQNAARGDLGSGLEVIRGFFSSVRVATCRILVNINVSYGAFYHAGPLLALMNNYGVRNTVALEKFLKSVRVQTTHLPEKRNKANEVIPRVKTIFGLARKDDGHRMAHPPRVRNHGAGAKDIEFWLDDEASSSSAPKAEAKGDPKGKGKGKGKAKPESSAASSSGKYISVFEFFRKTYNQVLQHPELPLINCGNRENPMYLPAEVCIVLPGQPSKSKLNGAQTQQMIRHAVRKPWENAASIVGEGVQTVGLNENSNVLLRSFGVKVTPGLIKVPGRILVGPKVIYKDNKAADPRFGSWNMIDIKFNTSASLTKWSYLLISLPRTRDSFDLQSVRTVMNEFHQALRKIGVDAAPPLVGQRLQIQTPDDPAIGSTLQRAAGALNLLFIILPEADIPLYKRIKTLADKDYGIHTVCSVGSKLAKDRGRDQYMANVALKFNLKLGGINQIVENKNLGIVNQNKTMVVGIDVTHPSPGSSSNAPSVSAMVASIDRFLGQWPATLRIQRARQEDVDDLEEMLKSRLNLWKTKGKHTALPENILVYRDGVSEGQYNKVLEKELPQLRRACERVYSAADTKRGLPRFTIVICGKRHKTRFYPTTEQGCDRSGNTKPGTVVDRGVTEARNWDFFLQAHAALQGTARPCHYYIVHDEIFRQTYAKAIPPPFQNIADIVEDLTHNMCYLFGRATKAVSLCPPAYYADLACERARCYLANLFDTPSPSAAPSVTGTSAAGGAGQPSAGDVEIHPRLKDTMFYI"

     misc_feature    552..797
                     /locus_tag="BDR25DRAFT_303777"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    846..986
                     /locus_tag="BDR25DRAFT_303777"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    <1044..1484
                     /locus_tag="BDR25DRAFT_303777"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1131..1133,1227..1229,1365..1367,1377..1379,
                     1431..1433,1452..1454,1458..1460)
                     /locus_tag="BDR25DRAFT_303777"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1632..2975
                     /locus_tag="BDR25DRAFT_303777"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(2043..2045,2055..2057,2091..2102,2109..2111,
                     2139..2141,2148..2150,2160..2162,2172..2174)
                     /locus_tag="BDR25DRAFT_303777"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2253..2255,2259..2261,2478..2480,2943..2945)
                     /locus_tag="BDR25DRAFT_303777"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      

gccttccacctccttcaccaccacattcgtcgtagatttagcctcacatatcgtatcttatattttgttcgtgcctcactcagctattcagtaccatgtcgaataagtacagaggtggcgggggtagacagcgaggtggcttccagggcggcggtggtggccgctcccgtggagatcgcggaggtgggtctagaggagggtatggagggccgcatggtggtggccagcaagctatccaggtcttctccaaccctcaaagtcaagatcccaaagttgcgaaagttgaagacgcattgcatccaacaacaaagaagaccctcaatcttggaagcttaaagttaaccgaagacttccccagccgtcccggatatggcaccaagggtgccaaagttgaactcacagcaaactacgtcgagttattgcccccatcaagcatgattctgcatcggtacgacatccagatcaagccagaggccgccggcaggaagcatttccggctcatgcagctacttctcctgtcgacagaattggcagctcaccagggaaaccttgcaactgacttccggtctacccttgtctccaaaactaagtttccgcgtaacgagaccttcatcgaggttcagtatcgttccgaaggcgaagacgagccggcggctggagccactacatatacggttcgcgtcctttattcgaagactttaagtacggccgagttgatcgactatctgaactccacgaatcttggccagtcgtttggagacaaagaggagttgacgcaggctctgaatatctttctgaaccactatgccaagtccgcaaacaaccttgccacgattggatcgacaaaaagcttttctctgaaccagaacgccgcaagaggagatctcggctctggcttagaagtcattcgggggttcttttcgagcgtgcgcgttgcgacttgtcgcatcctggtcaatatcaatgttagctatggagctttctaccacgctggtcctttactggcgctcatgaacaattacggagttcgcaacactgtcgccttggaaaaatttctcaaatcagttcgtgtgcaaaccacgcatctgcccgagaagcgcaacaaagccaatgaagtaattccccgagtcaagactatctttggacttgctaggaaggatgatggacatcgcatggcccacccacctcgcgttagaaaccatggggcaggcgccaaagatatcgagttctggcttgatgatgaagccagctcttctagtgcacccaaggcggaagccaagggagacccgaaagggaagggtaagggcaaaggcaaggccaaaccagagagctcagcagcttctagctctgggaagtacatcagtgtgtttgagttttttagaaaaacatacaatcaagtcctgcaacatcccgaacttccgctgatcaactgcggcaaccgtgagaatccgatgtatctcccagcagaagtctgcattgtcttgccgggtcagccttctaagtcgaaactcaatggcgcccaaacgcagcagatgattcgccacgctgttcgaaagccatgggagaatgcggcctcgattgttggggagggtgtacagactgttggtctcaatgagaactccaatgtgcttttgcgttcttttggcgttaaggtcactccaggactcatcaaagtccccggtcgcatcctcgttggcccgaaggtcatctacaaggacaacaaggccgccgacccacgcttcggtagttggaatatgatcgatattaaattcaacactagcgcctcacttaccaagtggtcatacctattaatctcgctcccccgaacacgtgactccttcgacctgcaaagcgtaaggactgtaatgaatgagtttcatcaagccttgaggaaaatcggcgtcgacgccgctccaccattagtaggtcaacgcctccaaattcagaccccagatgaccctgcgatcggctcaaccttacaacgcgccgctggagctttgaatctcctttttattattctgcccgaggccgacataccactatataagcgcatcaagacgctggctgataaggactatggcatccacactgtctgctctgtgggctctaaactagccaaagaccgcggccgcgaccaatatatggccaatgtcgctttgaagttcaaccttaagcttggcggcatcaatcagatcgtggagaacaagaacctcggcatcgtcaaccagaacaagacaatggttgttggcattgacgtcacacacccttcacctggttcttcttctaacgcgccttctgtctccgcaatggtagcttctattgaccggttcctaggtcaatggcccgcaaccctgcgcatccaacgcgcgaggcaggaggacgtggacgacctagaggagatgctcaagtctcgccttaacctctggaagaccaaaggtaaacacaccgctctccccgaaaatattcttgtctaccgcgacggagtttccgaaggtcagtacaacaaggtcctcgagaaagagcttccccaactccgccgcgcatgcgaacgagtgtactcagcagccgacactaaaagaggccttccacgcttcaccatcgtaatctgtggcaagcggcacaaaacgagattctaccccactactgagcaaggctgcgacaggtctggcaatactaaacccggcaccgtcgtcgaccgcggggtgactgaagcgcggaactgggatttcttcctacaggcgcacgccgcacttcagggaaccgcacgcccatgccactattacattgtgcatgacgagattttccggcagacctatgcaaaagcgattccacccccgttccagaacatcgctgatatcgtggaagatctcacgcataacatgtgctacttgttcggccgcgcgaccaaggctgttagtctatgcccgcccgcgtactacgctgatctcgcgtgtgagcgcgcgcgatgctacttggccaatttgttcgacaccccatcaccaagtgcggccccgtctgtgactggaacctcggcggctggaggagccgggcagcctagtgctggtgatgtcgagatccatccaaggctaaaggatacgatgttctatatctagatttggatattgtgaaagcgctcatcactggtgtacgctcgcggaagggaaatgatgaatattaaactataacaaagaaggttatggaaggaagctagcaaggagcgagatatggagcaccgaaagcactatagggcaacaagtggcaggaatctggtctatatcacgctggggcttgggatatacgaaacggccgctattctcctatacatttttacaatctagaagctatatacggc

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