2024-03-29 17:33:27, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_033352045 3882 bp mRNA linear INV 23-FEB-2022 DEFINITION PREDICTED: Belonocnema kinseyi protein argonaute-2-like (LOC117167226), mRNA. ACCESSION XM_033352045 VERSION XM_033352045.1 DBLINK BioProject: PRJNA623416 KEYWORDS RefSeq. SOURCE Belonocnema kinseyi ORGANISM Belonocnema kinseyi Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Proctotrupomorpha; Cynipoidea; Cynipidae; Cynipinae; Cynipini; Belonocnema. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_046657.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Updated annotation Annotation Name :: Belonocnema kinseyi Updated Annotation Release 100.20220217 Annotation Version :: 100.20220217 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; propagated RefSeq model Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3882 /organism="Belonocnema kinseyi" /mol_type="mRNA" /isolate="2016_QV_RU_SX_M_011" /host="Quercus virginiana" /db_xref="taxon:2817044" /chromosome="1" /sex="male" /tissue_type="whole body" /dev_stage="Sexual adult" /country="USA: Houston" /collection_date="2017" gene 1..3882 /gene="LOC117167226" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 95 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns" /db_xref="GeneID:117167226" CDS 249..3554 /gene="LOC117167226" /codon_start=1 /product="protein argonaute-2-like" /protein_id="XP_033207936.1" /db_xref="GeneID:117167226" /translation="
MGRKGKKKPSGDSGPAGDAPKPGTSATSGDGLPPQQPQGGERQEGAPVWRAGRGRGSGPQQQGPQQRPGQGPPPVGAFQVQPRPAWQPQGQQPAQAQQQRTPWGAQQQTPFQQQEKPAGPSQVQQPVQQQQKSAWQQKQPQQQQKPVGQQQQQQRPVAQQQQQQRPVAQQQQQQRPVAQQQHQQRPVSQQQQQKPVGQQQQQPGPQWRKEPFPVQQQAQAQQQKQQQPQQRQPRQAGDRASPPTKEMARMSVVDEPFPTTKQSSPTKSSIPDHLARALVEKIPLRKTEGKTGRPIQVFVNMMEIKFGPNFRTDIVHYDIVFNPETPRYLIRPAFQALQQQHFPTRHPAFDGRKNVFSAGRLPFGDTMEHDVEVHNEDGRPKSFKITMNKVNEIDLKWLKNVRRGYPEGERDIISVQALDIILRQAPYQNLCVTPVGRSFFSQPRGRPVDLGNGLELWVGLFQSAVLGWKPYLNVDVAHKGFPKPQAVLDAMGELCRSNGVPTAQEVNNNREEIERYLRKLKVTCMIPNQPDSRRTYTINGLVRCARDNFFEHNGNRVSVEHYFQIEKKYRIRYTDIPCLHVGPHQKNIHVPAELCTILSGQATNKKMNELQTSNMIRQAATPADARRQKILDTFNAVRHNHSPCMKEFGLSIGGEFEKVNARVLNAPTLTYNEQDRDVRVMKGVWRASRFNVGKDLPDESWTILNLDNRTREDALRNLEQLLRGGASSLGMNIGRAVTPYAQMQPPTRNLQEIIKFFNEAKARKLRLVFVVVPDRPPNVYSKVKQVAELNVGVLTQCLKSFTVQRKLNPATVGNILLKVNAKLDGVNHTLHKTSKPRCLFEPCMIVGADVTHPAPDAMGIPSIAAVAASHDPKAFKYHIEIRLQPPRAEIIQHLEEIMIIQLKTFYQKTSHKPRRIIFYRDGVSEGQFPQVMHHELTAIRNACRKVEPGYEPPISFFVVQKRHHIRLFPADARNSDDRNGNVQAGTIVDTEITHPSHIDFYLVSHASIQGTARPTKYRCLWDDNKMSEDEIEQLTYYLCHMFSRCTRSVSYPTPTYYAHLAAFRARALTQDVNIDVNNLENEQKRKLTIKEDFLNNPMFFV"
misc_feature 1269..1514 /gene="LOC117167226" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 1548..1697 /gene="LOC117167226" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1770..2096 /gene="LOC117167226" /note="PAZ domain; Region: PAZ; pfam02170" /db_xref="CDD:426635" misc_feature order(1854..1856,1896..1898,1923..1925,1935..1937, 1989..1991,2010..2012,2016..2018) /gene="LOC117167226" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 2175..3446 /gene="LOC117167226" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2586..2588,2598..2600,2634..2645,2652..2654, 2679..2681,2688..2690,2700..2702,2712..2714) /gene="LOC117167226" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2793..2795,2799..2801,3009..3011,3423..3425) /gene="LOC117167226" /note="active site" /db_xref="CDD:240015" ORIGIN
caccggcagtctgacatcttcttttttctgactgcagattggatagacagagataaaagaacatgcgagatgtagatgtgtacagatcactgagatgaaaacagaagacgtgtcgtgtcaagtcaagaaaagtatatagtcgtaaatttggctttaaaaaatcttttttttttgtgtttatcattgcgaaaagtgatctgaaattgaatgtgaatctgtgaactacaaaaggaaggaaatttcctaaaatgggccgaaaagggaagaagaagccatcaggggattctggaccagctggagatgccccaaaacctggaacatctgctacaagtggggatggactacctcctcagcaaccgcaaggtggtgaaaggcaggagggtgcgcctgtttggcgtgctggtagaggaagaggaagtggccctcaacaacaaggcccgcaacaaagacctggacaagggcctcctccagtaggtgcttttcaggtacaaccaagacctgcttggcaacctcaagggcagcaaccagcccaagcacaacaacaaagaacgccttggggggcacaacagcagacaccattccaacaacaggaaaaacctgctgggccatctcaagtgcaacagccagtccagcaacaacaaaaatccgcttggcaacaaaagcaacctcaacaacaacagaagcctgttggacaacagcagcagcaacaaaggcctgttgcgcaacagcagcagcaacaaaggcctgtcgcgcaacagcagcagcaacaaaggcctgttgcgcaacaacagcatcagcaaaggcctgtttcgcaacagcagcaacaaaagcctgttgggcaacagcaacagcaaccaggtccacaatggcggaaagagccatttcctgtgcaacaacaggcgcaggcccaacaacaaaaacaacagcagcctcagcaaagacaaccaagacaagccggtgatagagcttcaccgcctacaaaagaaatggcaagaatgagcgtagtggatgagccgtttccaacaacaaaacagtcttcccctacgaaatcatcaatcccagatcacctcgcgagggctttggttgaaaaaattccgcttcgcaagacagaaggaaagacaggtagacccattcaggtctttgtcaacatgatggaaatcaagtttggtccaaacttccgcactgacatcgttcactacgacattgtatttaatcctgaaactcctcgatatttgataagacctgcatttcaagcattgcagcaacagcattttccaacacgacatcctgcatttgatggaaggaaaaatgtcttcagtgctgggagattgccctttggagacacaatggaacatgatgtggaagttcataatgaagacggaagaccgaagtctttcaaaattacgatgaacaaagtcaatgaaattgacctgaaatggctgaaaaatgtgagaagagggtatccagaaggcgaacgcgacattataagtgtacaagccttagatatcattttacgacaggctccttatcaaaatttgtgtgtcacgccggtgggaaggtctttcttctctcagccacgcggtagaccagtggatctcggaaatggccttgaactctgggtgggtcttttccagtcagcagttcttggatggaagccttacttaaacgttgatgtggcccataaaggatttcctaagccacaagccgttcttgacgccatgggcgagctctgtcgctcaaatggggttcctacagcgcaagaggttaataacaaccgggaagaaattgagcgctatttgaggaaactaaaagtcacttgcatgattccaaatcaacccgattcaagacgcacctatacaattaatggattggtcagatgtgcaagagataactttttcgaacacaatgggaatcgtgttagcgtcgagcattattttcaaatcgaaaagaagtaccgaattcgatatactgatataccttgtctccacgttggaccgcatcaaaaaaacattcatgttcctgctgaactctgtactattctcagcggacaagcgacaaataagaaaatgaacgaactccaaacttcgaatatgatccggcaggctgcgacaccagcagatgctcgaaggcaaaagattttggacacgttcaatgcagttcgacacaatcatagcccgtgcatgaaggaatttggactctcaatcggaggagagttcgagaaagtgaacgctcgagttctgaatgcgccaacgttgacctacaacgaacaagacagagatgtccgagtcatgaagggagtttggagagcttcgagattcaacgtaggcaaagatttgcccgatgagagctggacaattttgaatctggacaacagaactcgagaagatgctcttcgaaatttagaacaattgttgagaggaggagcctccagtcttggaatgaacatcggaagagctgtgacgccttacgcacaaatgcagcctccaaccagaaatcttcaggagattatcaagtttttcaatgaagcaaaagctagaaagctgcgccttgtctttgtcgttgttcccgataggccgcccaatgtttacagtaaagtcaagcaagtggctgaattaaatgttggagttttgacccagtgtctcaagtccttcacagttcagagaaaattgaatccagcaactgttggaaatattctcttgaaagtgaacgcgaaattggatggagtaaatcataccttacacaaaacatcgaagccaagatgcttattcgaaccgtgtatgatagttggtgcagatgtgactcatccggctccagatgcaatgggaattccttccattgccgcggtggcagcaagtcacgatccaaaggccttcaagtatcacatcgaaattagattgcagcctccaagggctgagatcattcagcatttggaagagataatgattatccagctgaaaactttctatcagaaaacttcacataaaccaaggcgaattatcttctacagggatggagtcagtgagggccaatttcctcaggtaatgcaccatgaactgacggccatcaggaatgcctgcaggaaagtggagccaggttatgagcctccgatttcgttctttgttgtccaaaagagacatcatattcgccttttccccgccgacgcgaggaatagcgacgacaggaacggaaacgtccaggcgggaacgattgttgatacggaaatcacccatccatcgcatattgacttctaccttgtgtcacacgccagcattcagggaacggctagacctactaagtacagatgtctttgggacgataacaagatgagcgaggacgaaattgaacaactcacttattatctgtgccacatgttttcaagatgcactcgatctgtcagctatccgactccgacatattatgctcatcttgcagctttcagggcaagagccctgacgcaagatgttaatatcgacgtcaataacttggaaaatgaacagaagaggaagttgacaatcaaggaggatttcttgaataatccaatgttcttcgtctagaatttgtgaaggagtaaaataaatatatttatatcagcatcggaataatccactgcttcaattttcatattttatgcttgtttggaaaattacattcaccattattacatgtcaagagtagagagaagaatgtgatctaaacttagtaagtagttatatcgactgataaagtttaaacactacttctctattttgtattacgttataatttttacgcattatgctgcgcatatgtataatctatctttcaccagttttcttaaatattgcgtaattaattttcttttgttttttgagatttgtatttaatataatatttttaaatgta
//
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@meso_cacase at
DBCLS
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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