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2024-04-19 14:51:39, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_033242012            4485 bp    mRNA    linear   INV 30-MAR-2020
DEFINITION  PREDICTED: Anneissia japonica mucin-3A-like (LOC117101896), mRNA.
ACCESSION   XM_033242012
VERSION     XM_033242012.1
DBLINK      BioProject: PRJNA615663
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Anneissia japonica
  ORGANISM  Anneissia japonica
            Eukaryota; Metazoa; Echinodermata; Pelmatozoa; Crinoidea;
            Articulata; Comatulida; Comatulidae; Comatulinae; Anneissia.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_022696345.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Anneissia japonica Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 100% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4485
                     /organism="Anneissia japonica"
                     /mol_type="mRNA"
                     /isolate="Jap-2015-1"
                     /db_xref="taxon:1529436"
                     /chromosome="Unknown"
                     /tissue_type="sperms"
                     /country="Japan: Sagami Bay (Misaki)"
                     /collection_date="01-Jan-2016"
     gene            1..4485
                     /gene="LOC117101896"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein"
                     /db_xref="GeneID:117101896"
     CDS             1..4485
                     /gene="LOC117101896"
                     /codon_start=1
                     /product="mucin-3A-like"
                     /protein_id="XP_033097903.1"
                     /db_xref="GeneID:117101896"
                     /translation="
MRTSEISRQPTGCILKSIIICLFLPLYLASTEQTGTARIETDYATNADVSSTNSASTTQPRFISKSNTIIYDHNNTTSPDTTRIETDYTTNADVSFVTTITENVTTTGKILFFTDITTFKQTIKKNNKITSDEVVTTSITGVTSNKEEPTIVELIFGTTELPTIPSTHNIKTPALTNDTNTKDSGTGTDYTTDADVSSTYSAITTQPRFISTMNTIINKHNTTTSPDTTRIETDYTTNADISSTYSAIATQPRFTSTTDTYSETDYTTDADVSSTYSDINTQSRFISTTNTIISEHNTTTLPDTTTIEIDYTTNADVSSTHSAIATQPRYTSTTDTYTETDYTTDADVSSNYSAINTQSRFISTTNTIISEHNTTTLPDTTRIETDYTTNADVSSTYSATTTQPTFTSTTNTIINEHNTKTSPNTIRSEAALITEEVTRVESISNATELSTIPLTNNIKTSAITNAMNTTDSGTGTDYTTVTDADVSPTYSAITTQPRFTFTTNTIINERNTTASPDTTRIEAALITEEITRVESISDTRELPTITSTNNIFEYDIETSIIDIYEYNTTTTQDTTRIETDYATNAQHEASTLINVGYEHQTSTFTEEVTRVESISDTTELPTITSTNNIVQYDIETSIIDIYEYNTTTKPGTTSIETDYATNTQHEASTLITVGYETQTSTFTEEVTRVESISDTTKLPTITSTNNIVEFDIETSIIDIYEYNTTTTPGTTRIETDYATNAQQEASTLITVGYETQTSTFTEEVTRVESISDTTELPTITSTNNIVEYDIETSIIDIYEYNTTTTPGTTTIETDYATNAQHEASTLITDGYETQTSTFTEEVTRVESISDTTELPTITSKNSIVEYDIETSIIDIYEYNTTTTPPGTTRIETDYATNAQHDASTLINVSYEHNTTTASRTNVTTHIQTLEFSARSVSDISTADLTTDTATTSVPTTTHLNNIINMPTTDSNFRSATEQHTETTTGSRLCTHGTTTLNTLHKTTRRETVLSQEIANITKNVTNDNIEEVAVGLEVIVEKAELEPADVKEVSNALETIAKIKSPNENVTGAVVGTVDAIIASDSSDSNLPPETTALILESFEQQISTAATDGQNYTQDEDTLSVRTLSFNSNLNSDVEFVINENETPYVCFEDVCLANDRKQSVKLPKDLLTSYEERTNISFTSFYNPNLFQSGAAEQHLSSVIMSATIYNDSLPEVFQNPVKLVFNVPESYSNSNVSCVFWNATLDGNGNWSIKGCKRIDTGYKGSVTCHCTHLTHFAVLFFPNEIPPGVNLFLDLVTYIGCGVSIICLVLTVVTVLSITCYLSATKVEVFIYTIIIPIGLVMVFNFVIFVLTIKKLFFSSSMVNRPLDEKEKKKRLVNAIAISLLLGLTWIFGFLSFENDADIVFLILFCVFNSFQGVAIFYLFCLRQKECKEAWQKWLGIYKLKTSYNFSLRQSTSQCQTTNDLFRSISMEQKHKAFNQLQLVENPAFENTVD"
     misc_feature    3706..3837
                     /gene="LOC117101896"
                     /note="GPCR proteolysis site, GPS, motif; Region: GPS;
                     pfam01825"
                     /db_xref="CDD:426458"
     misc_feature    <3862..4305
                     /gene="LOC117101896"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; Region: 7tm_GPCRs; cl28897"
                     /db_xref="CDD:452889"
     misc_feature    3973..4050
                     /gene="LOC117101896"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:410628"
     misc_feature    4126..4197
                     /gene="LOC117101896"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:410628"
     misc_feature    4207..4284
                     /gene="LOC117101896"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:410628"
ORIGIN      
atgcgaacatcggagatatcacggcaaccaactggttgtattctgaaatcaattatcatttgcctgtttttgcctttatatttagcatctactgaacaaacaggcacagccagaattgaaactgattacgctactaatgcagatgtttcatcgactaattcagctagtactactcagccaagattcatctccaaatcgaacaccataatttatgaccataacaatacaacatcaccagacaccaccagaattgaaactgattacactacaaatgcagacgtttcatttgtaactaccataacagaaaatgtgacgacaacaggaaaaatactctttttcacagatataacgacatttaaacaaactataaaaaaaaataacaaaataacatcagatgaagtagtaacaacatctattactggggtgacaagtaataaggaagaacccacgatagtagagttaatattcggtacaacagagctaccaacgataccatcaacacacaatatcaaaaccccagcattaacgaatgatacgaacacgaaagattctggcacaggaactgattacactactgatgcagacgtttcatcaacttattcagctattactacacagccgagatttatctccacaatgaacaccataattaataaacataacactacaacatcaccagacaccacccgaattgaaactgattacactaccaatgcagacatttcatcaacgtattcagctattgctactcagccgagattcacctccacaacggacacctacagtgaaactgattacactactgatgcagacgtttcttcaacttattcagatattaatactcagtcgagattcatctccacaacgaacaccataattagtgaacataacactacaacattaccagacaccaccacaattgaaattgattacactaccaatgcagacgtttcatcaactcattcagctattgctactcagccgagatacacctccacaacggacacctacactgaaactgattacactactgatgcagacgtttcttcaaattattcagctattaatactcagtcgagattcatctccacaacgaacaccataattagtgaacataacactacaacattaccagacaccacccgaattgaaactgattacactaccaatgcagacgtttcgtcgacttattcagctactacaactcagccgacattcacctccacaacgaacaccataattaatgaacataacactaaaacatcaccaaacaccatccgaagtgaggctgctttaataacggaagaagtcacaagggtagagtcgatatccaatgcaacagagctatcaacgataccattaacgaacaatatcaaaacctcggcaataacgaatgccatgaacacgacagattctggcacaggaactgattacactacagtaactgatgcagacgtttcaccaacttattcagctattacaacacagccgagattcactttcacaacgaacaccataattaatgaacgtaacactacagcatcaccagacaccacccgaattgaggctgctttaataacggaagaaatcacgagggtagagtcgatctccgatacaagagagctaccaacgataacatcaacgaacaatatctttgaatacgacattgaaacttcaattatcgacatttatgaatataatactacaacaacacaagatacaaccagaattgaaactgattacgctactaatgcacaacatgaagccagtacattaattaatgttggttatgagcatcaaacatcgacatttacagaagaagtcacgagggtagagtcgatatccgatacaacagagctaccaacgataacatcaacgaacaatatcgtccaatacgacattgaaacttcaattatcgacatttatgaatataatactacaacaaaaccaggtacaaccagcattgaaactgattacgctactaatacacaacatgaagccagtacattaattactgttggttatgaaactcaaacatcgacatttacggaagaagtcaccagggtagagtcgatatccgatacaacaaagctaccaacgataacatcaacgaacaatatcgtcgaattcgacattgaaacttcaattatcgacatttatgaatataatactacaacaacaccaggtacaaccagaattgaaactgattacgctaccaatgcacaacaggaagccagtacattaattactgttggttatgaaactcaaacatcgacatttacagaagaagtcactagggtagagtcgatatccgatacaacagagttaccaacgataacatcaacgaacaatatcgtcgaatacgacattgaaacttcaattatcgacatttatgaatataatactacaacaacaccaggtacaaccacaattgaaactgattacgctactaatgcacaacatgaagccagtacattaattactgatggttatgaaactcaaacatcgacatttacagaagaggtcacgagggtagagtcgatatccgatacaacagagctaccaactataacatcaaagaacagtatcgtcgaatacgacattgaaacttcaatcatcgacatttatgaatataatactacaacaacaccaccaggtacaaccagaattgaaactgattacgctactaatgcacaacatgatgccagtacgttaattaatgttagttatgaacacaacactacaactgcgtctcgtacaaatgttacaacacacattcaaactttggagttttcggctcgcagtgtttctgacatttcaacggcggatctaactactgacacggcaactacatcggtaccaactacgacacatttgaataacatcattaatatgccaacaactgattcgaatttcagatcggctaccgaacaacatacagagaccacaactgggtctagattgtgtacgcatgggacaacaacgttgaatacgctccacaagacaacaagaagggaaactgtcctatcacaagaaatcgctaacattactaagaacgttactaatgacaatattgaagaggtagcagtaggactcgaagttatcgtagagaaggcggagctggagccagctgatgtaaaggaagtctctaatgccctagaaactatagccaaaatcaaatcaccaaacgaaaatgtaacaggtgcagtcgtgggtacggtggacgctataattgcctctgattcatcagattctaatctaccacctgaaacgacagctttaatccttgagtcattcgagcagcaaattagcaccgccgctactgatggtcagaattacactcaagatgaagatactctttctgtgcgaactttaagttttaattctaatcttaactctgatgttgaattcgttattaatgaaaatgagacgccttacgtatgttttgaagatgtttgtttagcaaacgacaggaagcagtctgtcaaacttccaaaggatctcctaacatcatatgaggagcggacgaacatcagttttacttcgttttacaacccaaacctgtttcagtcgggtgcagctgaacagcatctatccagtgtgattatgtcagctaccatttataatgacagtcttccggaggtgttccaaaacccagttaaacttgtgttcaacgtacccgaatcctattcaaacagcaatgtttcttgtgttttttggaatgcaactttagatggaaatggtaattggtcaattaaaggctgtaagcgtatcgatacaggctataagggcagtgtaacgtgtcattgtacacatctaacacactttgctgtcttgttttttcctaatgaaattccacctggtgttaacctatttctagatttggtgacctatatcggctgtggagtttcaatcatatgcttggtattaaccgtagtaactgttctatcaataacttgttaccttagtgctaccaaagtggaggtgttcatttacactatcattatcccaattggacttgtcatggtcttcaactttgtcatatttgtactcaccattaaaaagttattcttctcgagctcaatggtgaatagaccactcgatgaaaaagagaagaagaaacgtttggtaaacgccatcgccatctctttgctgctaggccttacttggatcttcggatttttgtctttcgaaaacgacgctgacattgtgtttctgattctgttctgcgtttttaactcgtttcaaggcgtcgccattttctaccttttttgtttaagacagaaagaatgcaaagaagcttggcagaaatggctaggcatctacaagttgaaaacatcatataatttcagtttaagacagagtacatcacaatgtcaaactacaaacgacttgttcagatcaatttcgatggagcagaaacacaaggcattcaatcaattgcagttggttgaaaatcctgcatttgaaaacacagttgattag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]