2024-04-19 14:51:39, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_033242012 4485 bp mRNA linear INV 30-MAR-2020 DEFINITION PREDICTED: Anneissia japonica mucin-3A-like (LOC117101896), mRNA. ACCESSION XM_033242012 VERSION XM_033242012.1 DBLINK BioProject: PRJNA615663 KEYWORDS RefSeq; includes ab initio. SOURCE Anneissia japonica ORGANISM Anneissia japonica Eukaryota; Metazoa; Echinodermata; Pelmatozoa; Crinoidea; Articulata; Comatulida; Comatulidae; Comatulinae; Anneissia. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_022696345.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Anneissia japonica Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..4485 /organism="Anneissia japonica" /mol_type="mRNA" /isolate="Jap-2015-1" /db_xref="taxon:1529436" /chromosome="Unknown" /tissue_type="sperms" /country="Japan: Sagami Bay (Misaki)" /collection_date="01-Jan-2016" gene 1..4485 /gene="LOC117101896" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:117101896" CDS 1..4485 /gene="LOC117101896" /codon_start=1 /product="mucin-3A-like" /protein_id="XP_033097903.1" /db_xref="GeneID:117101896" /translation="
MRTSEISRQPTGCILKSIIICLFLPLYLASTEQTGTARIETDYATNADVSSTNSASTTQPRFISKSNTIIYDHNNTTSPDTTRIETDYTTNADVSFVTTITENVTTTGKILFFTDITTFKQTIKKNNKITSDEVVTTSITGVTSNKEEPTIVELIFGTTELPTIPSTHNIKTPALTNDTNTKDSGTGTDYTTDADVSSTYSAITTQPRFISTMNTIINKHNTTTSPDTTRIETDYTTNADISSTYSAIATQPRFTSTTDTYSETDYTTDADVSSTYSDINTQSRFISTTNTIISEHNTTTLPDTTTIEIDYTTNADVSSTHSAIATQPRYTSTTDTYTETDYTTDADVSSNYSAINTQSRFISTTNTIISEHNTTTLPDTTRIETDYTTNADVSSTYSATTTQPTFTSTTNTIINEHNTKTSPNTIRSEAALITEEVTRVESISNATELSTIPLTNNIKTSAITNAMNTTDSGTGTDYTTVTDADVSPTYSAITTQPRFTFTTNTIINERNTTASPDTTRIEAALITEEITRVESISDTRELPTITSTNNIFEYDIETSIIDIYEYNTTTTQDTTRIETDYATNAQHEASTLINVGYEHQTSTFTEEVTRVESISDTTELPTITSTNNIVQYDIETSIIDIYEYNTTTKPGTTSIETDYATNTQHEASTLITVGYETQTSTFTEEVTRVESISDTTKLPTITSTNNIVEFDIETSIIDIYEYNTTTTPGTTRIETDYATNAQQEASTLITVGYETQTSTFTEEVTRVESISDTTELPTITSTNNIVEYDIETSIIDIYEYNTTTTPGTTTIETDYATNAQHEASTLITDGYETQTSTFTEEVTRVESISDTTELPTITSKNSIVEYDIETSIIDIYEYNTTTTPPGTTRIETDYATNAQHDASTLINVSYEHNTTTASRTNVTTHIQTLEFSARSVSDISTADLTTDTATTSVPTTTHLNNIINMPTTDSNFRSATEQHTETTTGSRLCTHGTTTLNTLHKTTRRETVLSQEIANITKNVTNDNIEEVAVGLEVIVEKAELEPADVKEVSNALETIAKIKSPNENVTGAVVGTVDAIIASDSSDSNLPPETTALILESFEQQISTAATDGQNYTQDEDTLSVRTLSFNSNLNSDVEFVINENETPYVCFEDVCLANDRKQSVKLPKDLLTSYEERTNISFTSFYNPNLFQSGAAEQHLSSVIMSATIYNDSLPEVFQNPVKLVFNVPESYSNSNVSCVFWNATLDGNGNWSIKGCKRIDTGYKGSVTCHCTHLTHFAVLFFPNEIPPGVNLFLDLVTYIGCGVSIICLVLTVVTVLSITCYLSATKVEVFIYTIIIPIGLVMVFNFVIFVLTIKKLFFSSSMVNRPLDEKEKKKRLVNAIAISLLLGLTWIFGFLSFENDADIVFLILFCVFNSFQGVAIFYLFCLRQKECKEAWQKWLGIYKLKTSYNFSLRQSTSQCQTTNDLFRSISMEQKHKAFNQLQLVENPAFENTVD"
misc_feature 3706..3837 /gene="LOC117101896" /note="GPCR proteolysis site, GPS, motif; Region: GPS; pfam01825" /db_xref="CDD:426458" misc_feature <3862..4305 /gene="LOC117101896" /note="seven-transmembrane G protein-coupled receptor superfamily; Region: 7tm_GPCRs; cl28897" /db_xref="CDD:452889" misc_feature 3973..4050 /gene="LOC117101896" /note="TM helix 5 [structural motif]; Region: TM helix 5" /db_xref="CDD:410628" misc_feature 4126..4197 /gene="LOC117101896" /note="TM helix 6 [structural motif]; Region: TM helix 6" /db_xref="CDD:410628" misc_feature 4207..4284 /gene="LOC117101896" /note="TM helix 7 [structural motif]; Region: TM helix 7" /db_xref="CDD:410628" ORIGIN
atgcgaacatcggagatatcacggcaaccaactggttgtattctgaaatcaattatcatttgcctgtttttgcctttatatttagcatctactgaacaaacaggcacagccagaattgaaactgattacgctactaatgcagatgtttcatcgactaattcagctagtactactcagccaagattcatctccaaatcgaacaccataatttatgaccataacaatacaacatcaccagacaccaccagaattgaaactgattacactacaaatgcagacgtttcatttgtaactaccataacagaaaatgtgacgacaacaggaaaaatactctttttcacagatataacgacatttaaacaaactataaaaaaaaataacaaaataacatcagatgaagtagtaacaacatctattactggggtgacaagtaataaggaagaacccacgatagtagagttaatattcggtacaacagagctaccaacgataccatcaacacacaatatcaaaaccccagcattaacgaatgatacgaacacgaaagattctggcacaggaactgattacactactgatgcagacgtttcatcaacttattcagctattactacacagccgagatttatctccacaatgaacaccataattaataaacataacactacaacatcaccagacaccacccgaattgaaactgattacactaccaatgcagacatttcatcaacgtattcagctattgctactcagccgagattcacctccacaacggacacctacagtgaaactgattacactactgatgcagacgtttcttcaacttattcagatattaatactcagtcgagattcatctccacaacgaacaccataattagtgaacataacactacaacattaccagacaccaccacaattgaaattgattacactaccaatgcagacgtttcatcaactcattcagctattgctactcagccgagatacacctccacaacggacacctacactgaaactgattacactactgatgcagacgtttcttcaaattattcagctattaatactcagtcgagattcatctccacaacgaacaccataattagtgaacataacactacaacattaccagacaccacccgaattgaaactgattacactaccaatgcagacgtttcgtcgacttattcagctactacaactcagccgacattcacctccacaacgaacaccataattaatgaacataacactaaaacatcaccaaacaccatccgaagtgaggctgctttaataacggaagaagtcacaagggtagagtcgatatccaatgcaacagagctatcaacgataccattaacgaacaatatcaaaacctcggcaataacgaatgccatgaacacgacagattctggcacaggaactgattacactacagtaactgatgcagacgtttcaccaacttattcagctattacaacacagccgagattcactttcacaacgaacaccataattaatgaacgtaacactacagcatcaccagacaccacccgaattgaggctgctttaataacggaagaaatcacgagggtagagtcgatctccgatacaagagagctaccaacgataacatcaacgaacaatatctttgaatacgacattgaaacttcaattatcgacatttatgaatataatactacaacaacacaagatacaaccagaattgaaactgattacgctactaatgcacaacatgaagccagtacattaattaatgttggttatgagcatcaaacatcgacatttacagaagaagtcacgagggtagagtcgatatccgatacaacagagctaccaacgataacatcaacgaacaatatcgtccaatacgacattgaaacttcaattatcgacatttatgaatataatactacaacaaaaccaggtacaaccagcattgaaactgattacgctactaatacacaacatgaagccagtacattaattactgttggttatgaaactcaaacatcgacatttacggaagaagtcaccagggtagagtcgatatccgatacaacaaagctaccaacgataacatcaacgaacaatatcgtcgaattcgacattgaaacttcaattatcgacatttatgaatataatactacaacaacaccaggtacaaccagaattgaaactgattacgctaccaatgcacaacaggaagccagtacattaattactgttggttatgaaactcaaacatcgacatttacagaagaagtcactagggtagagtcgatatccgatacaacagagttaccaacgataacatcaacgaacaatatcgtcgaatacgacattgaaacttcaattatcgacatttatgaatataatactacaacaacaccaggtacaaccacaattgaaactgattacgctactaatgcacaacatgaagccagtacattaattactgatggttatgaaactcaaacatcgacatttacagaagaggtcacgagggtagagtcgatatccgatacaacagagctaccaactataacatcaaagaacagtatcgtcgaatacgacattgaaacttcaatcatcgacatttatgaatataatactacaacaacaccaccaggtacaaccagaattgaaactgattacgctactaatgcacaacatgatgccagtacgttaattaatgttagttatgaacacaacactacaactgcgtctcgtacaaatgttacaacacacattcaaactttggagttttcggctcgcagtgtttctgacatttcaacggcggatctaactactgacacggcaactacatcggtaccaactacgacacatttgaataacatcattaatatgccaacaactgattcgaatttcagatcggctaccgaacaacatacagagaccacaactgggtctagattgtgtacgcatgggacaacaacgttgaatacgctccacaagacaacaagaagggaaactgtcctatcacaagaaatcgctaacattactaagaacgttactaatgacaatattgaagaggtagcagtaggactcgaagttatcgtagagaaggcggagctggagccagctgatgtaaaggaagtctctaatgccctagaaactatagccaaaatcaaatcaccaaacgaaaatgtaacaggtgcagtcgtgggtacggtggacgctataattgcctctgattcatcagattctaatctaccacctgaaacgacagctttaatccttgagtcattcgagcagcaaattagcaccgccgctactgatggtcagaattacactcaagatgaagatactctttctgtgcgaactttaagttttaattctaatcttaactctgatgttgaattcgttattaatgaaaatgagacgccttacgtatgttttgaagatgtttgtttagcaaacgacaggaagcagtctgtcaaacttccaaaggatctcctaacatcatatgaggagcggacgaacatcagttttacttcgttttacaacccaaacctgtttcagtcgggtgcagctgaacagcatctatccagtgtgattatgtcagctaccatttataatgacagtcttccggaggtgttccaaaacccagttaaacttgtgttcaacgtacccgaatcctattcaaacagcaatgtttcttgtgttttttggaatgcaactttagatggaaatggtaattggtcaattaaaggctgtaagcgtatcgatacaggctataagggcagtgtaacgtgtcattgtacacatctaacacactttgctgtcttgttttttcctaatgaaattccacctggtgttaacctatttctagatttggtgacctatatcggctgtggagtttcaatcatatgcttggtattaaccgtagtaactgttctatcaataacttgttaccttagtgctaccaaagtggaggtgttcatttacactatcattatcccaattggacttgtcatggtcttcaactttgtcatatttgtactcaccattaaaaagttattcttctcgagctcaatggtgaatagaccactcgatgaaaaagagaagaagaaacgtttggtaaacgccatcgccatctctttgctgctaggccttacttggatcttcggatttttgtctttcgaaaacgacgctgacattgtgtttctgattctgttctgcgtttttaactcgtttcaaggcgtcgccattttctaccttttttgtttaagacagaaagaatgcaaagaagcttggcagaaatggctaggcatctacaagttgaaaacatcatataatttcagtttaagacagagtacatcacaatgtcaaactacaaacgacttgttcagatcaatttcgatggagcagaaacacaaggcattcaatcaattgcagttggttgaaaatcctgcatttgaaaacacagttgattag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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