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2026-05-31 02:57:02, GGRNA.v2 : RefSeq release 233 (Jan, 2026)

LOCUS       XM_032977054           17028 bp    mRNA    linear   VRT 08-AUG-2025
DEFINITION  PREDICTED: Petromyzon marinus copper-transporting ATPase 2-like
            (LOC116955762), transcript variant X1, mRNA.
ACCESSION   XM_032977054
VERSION     XM_032977054.2
DBLINK      BioProject: PRJNA1269050
KEYWORDS    RefSeq.
SOURCE      Petromyzon marinus (sea lamprey)
  ORGANISM  Petromyzon marinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Cyclostomata;
            Hyperoartia; Petromyzontiformes; Petromyzontidae; Petromyzon.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_133727) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 8, 2025 this sequence version replaced XM_032977054.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_048934315.1-RS_2025_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.4
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/04/2025
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17028
                     /organism="Petromyzon marinus"
                     /mol_type="mRNA"
                     /isolate="PM22_M1"
                     /db_xref="taxon:7757"
                     /chromosome="61"
                     /sex="male"
                     /tissue_type="testes"
                     /dev_stage="adult"
                     /ecotype="Great Lakes invasive population"
                     /geo_loc_name="USA: Great Lakes"
                     /collection_date="2022-08"
                     /collected_by="Jeramiah Smith"
     gene            1..17028
                     /gene="LOC116955762"
                     /note="copper-transporting ATPase 2-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, 19 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     56 samples with support for all annotated introns"
                     /db_xref="GeneID:116955762"
     CDS             833..5428
                     /gene="LOC116955762"
                     /codon_start=1
                     /product="copper-transporting ATPase 2-like"
                     /protein_id="XP_032832945.2"
                     /db_xref="GeneID:116955762"
                     /translation="
MAEEEEVKAGVEVKADMEVWHATFTVEGMTCQSCVQSITQVLTDLPGIYSVQVSLENKSASVLYDPALHTPNSLKNSVEDIGFEAAHRGAVTVMMLEVADIDIVGMTCQSCVQSIEGKMSKLKGVLSFSVCLQKNNATVAFIPGVISMQKLCDEIDDMGFEARPVDRKPATDTAEEGRSTEDMVKMRLEGLIGQSAVNALEGKLSKLNGVLRVKVNLSSQEVVVWFQKLAISVDDIQNQIAECGLQTTVRSRPKQLRLSPQAVQKLQEMNGSVCHFKEAKPTSLGLGKCPNVVISVEGMHCKSCVFNIESNIGQLPGVHSIVVSLETKSAAVSYSPEDISPAALCQAIEALPPGIFQASVSPTSAKAVASTPPPPLSSVVVLRVERMESSAGVLAVERALLECPGVKTARASLVDGTATVHYDPRGASPAALCASITSKGFKASLLDGSDAKSRANHAQFLLEGSATPSLNGSRPGWHAPTTSGGKGSMQLVPTEEEAAVASAKEEEAKCFLMVTGMTCASCVANIERVLGRRRGVQSVLVSLMAGKAEVRYHPASVAPEEIAESVRDMGFGATLLDDQDIAPGCLELVVQGMRSASCAHAIESALMQCHGVTSASVALATNRAHVEFDPDQIGPRDIIKAVQNAGFLAVHLKRDRTGNHLDHSDKIHQWRRSFFFSLIIVVPTMGMMIYMMVTERHHEGHHTGILAKHIVPGLSLMNLAAFVLCTPVQFIGGWYFYKQAYGALRHGTANMDVLIVLATTVAYAYSCVVLFVAMGEQAMVSPITFFDTPPMLFVFVSLGRWLEHIAKSKTSEALVKLMSLQAAEATVVKYGLSNDIIGEEQVDVDLVHRGDVVRVLPGGKFPVDGKVIEGQSLADESLITGEAMPVMKKPGSLVIAGSINQNGGLLVKATHVGADTTLSQIVRLVEEAQTSKAPIQQFADKISGYFVPFIVGVSVVTLLSWVTIGYVDFSIAKKYFPEYDPRLSHGEVVWRLAFQAAITVLCIACPCSLGLATPTAVMVGTGVGAQLGILIKGGEPLEMAHKVRTVVFDKTGTITHGIPKVMRVSILEEHVKLPLRTFLAVVGTAEASSEHPLGSAVAKYCRQSLGTESLGSCADFQAIPGCGISCRVSDVEAVLASSKQGLAAGNSAAAAAAARTDGFPLLVDIADGGPAGSQAISSTDLGAGPAATSGQEYAVLIGNREWMNRNALLVAEPVDKAMAEHEEKGQTAVLVAINGKLCGMLAIADTVKPEAALAVRTLADMGLQVVLMTGDNRKTAQAIAAQVGIRRVFAEVLPSHKVAKVEQLQESGQTVAMVGDGVNDSPALARSDVGIALGTGTDVAIEAADIVLIRNDLLDVVASIHLSKKTVRRIHINFVFALIYNVVGIPIAAGVFMPAGLVLQPWMAAAAMAASSVSVVLSSLMLKRYKKPSRPRLEAQTRGRVRGCSLSEVSVAVGMGDRPAWVDGRTSPKLGVWDRVKFISQTSIASLTADKRMAGGGTAAGLSVQLLDRHSLLGDGGGGSGGSHHEFTTDV"
     misc_feature    896..1090
                     /gene="LOC116955762"
                     /note="Copper chaperone CopZ [Inorganic ion transport and
                     metabolism]; Region: CopZ; COG2608"
                     /db_xref="CDD:442020"
     misc_feature    1130..1321
                     /gene="LOC116955762"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(1148..1156,1163..1165)
                     /gene="LOC116955762"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1379..1564
                     /gene="LOC116955762"
                     /note="Copper chaperone CopZ [Inorganic ion transport and
                     metabolism]; Region: CopZ; COG2608"
                     /db_xref="CDD:442020"
     misc_feature    1709..1885
                     /gene="LOC116955762"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(1727..1735,1742..1744)
                     /gene="LOC116955762"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1970..2161
                     /gene="LOC116955762"
                     /note="Copper chaperone CopZ [Inorganic ion transport and
                     metabolism]; Region: CopZ; COG2608"
                     /db_xref="CDD:442020"
     misc_feature    2366..2554
                     /gene="LOC116955762"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(2381..2389,2396..2398)
                     /gene="LOC116955762"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    2588..2773
                     /gene="LOC116955762"
                     /note="Copper chaperone CopZ [Inorganic ion transport and
                     metabolism]; Region: CopZ; COG2608"
                     /db_xref="CDD:442020"
     misc_feature    2846..5038
                     /gene="LOC116955762"
                     /note="P-type heavy metal-transporting ATPase, similar to
                     human copper-transporting ATPases, ATP7A and ATP7B;
                     Region: P-type_ATPase_Cu-like; cd02094"
                     /db_xref="CDD:319783"
     misc_feature    order(3845..3847,3851..3853,4970..4972)
                     /gene="LOC116955762"
                     /note="putative Cu binding site [ion binding]; other site"
                     /db_xref="CDD:319783"
     misc_feature    order(3977..3985,4187..4189,4421..4429,4517..4519,
                     4637..4645,4703..4705,4712..4714,4721..4723,4778..4780,
                     4787..4789)
                     /gene="LOC116955762"
                     /note="putative ATP binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:319783"
     polyA_site      17028
                     /gene="LOC116955762"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
tcgtcatcaccggtcacatcgtttacaatcaccaccaccatcaccaccagcaataccaccatcagcaacaacaccaccactatcatcatcactaccaccatcatcatcactaccaccaccatcagcaacaccaccatcaccactatcatcatcatcactaccaccattaacaacaacaccatcaccaccaccatcagcaacaccaccattaagaaacaccaccaccatcatcaccaccatcatcaccagcaacaccctcgtccgccgtgcgctgggttactcgtcgcacggggcgaggtcgtcccgactctcatcccttgtgactctcaccccctctcttatcccttgtgactctcacaccctctctcatcccctctgtcaccccctctctcaccccctgtgactctcaccccctctctcatcccctctgtcaccccctctctcaccccctctctcaccccctctctcatcccctctctcatcccctctctcaccccctctgtcaccccctctctcacccactctgtcaccccctctctcacccactctgtcaccccctctcacccctctgtcaccccctctctcaccccctctctcacccccctctctcatcccctgtgactctcaccccctctctcaccccctctgtcatcccctctctcaccccctctgtcaccccctctgtcaccccctctctcaacccctctctcacccactctctcatcccatcggattgcgcagtggacgcgaagcggccggactcagctctgagggcttcggcgcgagacggcaacgtgcggcttgaaaaccggagcaccgtgagccgctgggcatggcggaggaggaggaggtgaaggccggcgtggaagtaaaggccgacatggaggtgtggcacgccacattcaccgtggaaggcatgacgtgccagtcgtgcgtgcagagcatcacccaggtgctcacggatctgcccgggatctacagcgtacaggtgtctttggagaataagagcgcttcagttctgtacgacccggcacttcacaccccgaactctctgaaaaacagcgttgaggacattggcttcgaggcagctcacaggggagcagtcaccgtcatgatgctggaagtcgccgacattgacattgtgggcatgacctgtcagtcgtgtgtgcagagcatagaggggaaaatgtcaaagctcaagggagtgctgagcttcagcgtgtgcttgcagaaaaacaatgccacggtcgcattcattccgggggtgataagcatgcagaagctgtgcgacgaaatcgacgacatgggattcgaggcgcgccccgtcgatcggaagcctgccacggacaccgcggaagagggcagatcaaccgaggatatggtgaaaatgaggctcgaaggattgattgggcaatccgcggtgaatgcactggaggggaagttgagcaagttgaatggtgtcctgcgcgtgaaggttaacctgtccagccaggaggtggtcgtgtggttccagaagctcgccatcagcgtcgacgacatccaaaaccagatcgccgaatgtggtttgcaaaccaccgtgaggtcgcgtccgaagcagctgaggttgtcgccgcaggccgtgcagaaactgcaggagatgaacggctctgtgtgccattttaaagaagccaagccaacgtcgctaggcctagggaagtgtccgaacgtcgtcataagcgtcgaggggatgcactgcaagtcgtgcgtctttaacatcgaaagcaacatcggccagttgcccggagtgcacagcatcgtggtttctctcgagacaaagtcggctgcggtgagctacagcccggaggacatctcccccgcggctctgtgccaggccatcgaggcacttccacccggcatctttcaagcgagcgtttcgccaacgtcggcgaaggcggtggcttccacccctcctcccccgctgagcagcgtcgtggtgctgcgcgtggagcgcatggagagctccgctggcgtcctcgccgtggagcgcgccctgctggagtgccccggcgtgaaaacggcgcgcgcctcgctcgtcgacggcaccgccaccgtgcactatgacccccgcggcgccagccccgccgcgctctgcgccagcatcaccagcaagggcttcaaggcttccctgctcgatggcagcgatgccaagtcacgggcaaaccacgcgcagtttctactggagggctcggctactccctcgctcaacggcagcaggccgggctggcacgcgcccaccaccagcggcggcaaggggtccatgcagctcgtgcccaccgaggaagaggcagcggtggcatcggcgaaggaagaggaggccaagtgcttcctgatggtcacgggcatgacttgcgcctcgtgcgtggcaaacatcgagcgcgtgctcggcagaaggcgcggtgttcagtcggtgctggtgtcgctcatggccggcaaggcggaggtgcgctaccacccggcctccgtggcgccggaggagatcgcggagagcgtgcgagacatgggctttggggcgacgctcctcgatgaccaggacatcgcgccgggctgcctggagctcgtggtccagggcatgcggtcggcgtcgtgcgctcacgccatcgagtcggcgctcatgcagtgccacggcgtcacgagcgcctccgtggcgctcgccacaaaccgggcgcacgtggagttcgaccccgaccagatcggcccgcgggacatcatcaaggccgtccagaatgccgggttcctcgccgtccacctgaagagagaccgcactgggaaccacctcgaccactcggacaagattcaccagtggcgaaggtcattcttcttcagcctgataattgtggtgcctaccatggggatgatgatttacatgatggtgacagaacgtcaccacgagggccaccacaccggcatattggccaagcacatcgtgccggggctctctctgatgaacctggctgccttcgtgttgtgcaccccagtgcagttcatcggcggctggtacttctacaagcaggcctacggggccctgcgtcacggcacggccaacatggacgtgctgatcgtgctggcgaccaccgtggcgtacgcctactcctgcgtggttctcttcgtggcaatgggggagcaggcgatggtcagccccatcacgttcttcgatacgccgcccatgctcttcgtgttcgtgtcgctcggccgctggctcgagcacatcgccaagagcaaaacctcggaggcgctcgtcaagctgatgtcccttcaggctgcagaggccacggtggtgaagtacggactcagcaacgacatcatcggagaggagcaggtggacgtggacctggtgcaccggggggacgtggtgcgagtgctgcccggagggaagttcccagtcgacgggaaggtcatcgaggggcagtccctcgccgacgagtctctcatcaccggtgaggcgatgccagtgatgaaaaagccggggagcctggtgatcgctggctccatcaaccagaacggcggcctgctggtgaaggccactcacgtgggagcggacacaacgctgtcccaaattgtgcggctggtggaggaggcgcagacttccaaggcacctattcagcagttcgccgacaagatcagcggctactttgtgccgttcatcgtgggcgtttccgtggtgaccctgctctcctgggtcaccatcggctacgtggatttcagcatcgctaagaaatactttccggagtacgatccgaggctgtcgcacggcgaggtggtctggcgcctcgccttccaggcggccatcacggtcctgtgcatcgcgtgcccctgctcgctgggcctggccacccccacggccgtcatggtcggcacgggggtcggagcgcagctgggcatcctcatcaaaggcggcgagcccctggagatggctcacaaggtgcgcacggtagtgtttgacaagacgggcacaatcacgcatggcatcccgaaggtgatgcgcgtgtccatcctggaggagcacgtgaagctgcccctccgcacgttcctcgcggtggtgggcacagcggaggcaagcagcgagcacccgctgggctcggccgtcgccaagtactgtcggcagagcctcggcaccgaaagcctgggatcgtgcgccgacttccaggccatccctgggtgcgggatcagctgccgcgtgtccgacgtggaggccgtgctggcctcgtctaagcagggcctggccgccggcaactcggcggcggcggcggcggcggcgaggaccgacggctttccgctgctggtggacatcgccgacggcggacccgcgggctcccaggccatctccagcaccgatttgggggctggaccagcagcaacctcggggcaagaatacgccgttctgattggaaaccgcgagtggatgaaccggaatgcgctgctggtcgcggagcccgtcgacaaggccatggctgagcacgaggagaagggccagaccgccgtcttggtcgccatcaacggcaagctgtgcggcatgctggccatcgcggacacggtgaagcccgaggccgcgcttgccgtccgcacgctcgccgacatgggcctccaggtggtgctcatgacgggcgacaacaggaagacggcacaagcgatcgccgcccaggtgggcatcaggcgcgtgtttgcggaggtgctgccctcgcacaaggtggccaaggtggagcagctgcaagagagcggacagacggtggcgatggtgggcgacggcgtcaacgactcgccggcactcgcccgctccgacgtgggcatcgcgctcggcaccggcaccgacgttgccatcgaggcggcggacattgtcctcatccgcaacgacctgctggacgtcgttgccagcattcacctctccaagaagacggtgcgacgcatccacatcaacttcgtgttcgccctcatctacaacgtcgtcgggatccccattgctgcag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//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]