LOCUS       XM_032678938            6820 bp    mRNA    linear   VRT 29-FEB-2020
DEFINITION  PREDICTED: Chiroxiphia lanceolata ATPase copper transporting beta
            (ATP7B), transcript variant X5, mRNA.
ACCESSION   XM_032678938
VERSION     XM_032678938.1
DBLINK      BioProject: PRJNA603801
KEYWORDS    RefSeq.
SOURCE      Chiroxiphia lanceolata (lance-tailed manakin)
  ORGANISM  Chiroxiphia lanceolata
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Passeriformes; Pipridae;
            Chiroxiphia.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045638.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Chiroxiphia lanceolata Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6820
                     /organism="Chiroxiphia lanceolata"
                     /mol_type="mRNA"
                     /isolate="bChiLan1"
                     /db_xref="taxon:296741"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="isolated red blood cells"
                     /dev_stage="adult"
                     /country="Panama: Isla Boca Btava"
                     /lat_lon="8.2166658 N 82.2666656 W"
                     /collection_date="14-Apr-2017"
                     /collected_by="Emily DuVal"
     gene            1..6820
                     /gene="ATP7B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 ESTs, 7 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116782376"
     CDS             440..4768
                     /gene="ATP7B"
                     /codon_start=1
                     /product="copper-transporting ATPase 2 isoform X5"
                     /protein_id="XP_032534829.1"
                     /db_xref="GeneID:116782376"
                     /translation="

MKHNFAFDNMGYEESFETTPSSSSQERTVTINIVGMTCQSCVQAIEGRISKVKGIVSIKVSREQNNAVIKYLQLEISPDQICLEIQDMGFDASIAEEKLTTATINLSSLKEAVVKLRVEGMTCQSCVTNIEGKIRKLHGVAKIKVSLGNQEAIIAYYPYIIQPDDLKRHINNLGYDCTIKSKSAPLKLGVLDLQRLQNANPEKTPASFEGDGLDPLVAEMSSTATVTVQIEGMHCKSCVRNIEENISAIPGIKSIKVSLEQKCAVVEYSPNLITLSALQQAIESLPPENFKVCLLSGSEANKGASPSPAFTGDLIKQPLQDPTCMVVIKIDGMTCNSCAQSIEGTISERQGVQQVAVSLAGSTGTIHYDPAVTNGEELRAAIEDMGFDASVLTVFVWCTSLFIQDTSTAEHRHQPNASKAAVQPRAPEPPQQGCVLDALLDSPHLDGSNQLSGATAEKCFLQITGMTCASCVSTIERNLQKEDGIVSVLVALMAGKAEIKYKPEFIQPFEIARLIQNLGFEATIIEDHAETEGHVDLLITGMTCSSCVHNIESKLMRTNGIFYASVALATCKAHIQFDPEIIGPRDIIKIIKEIGFHASVARRDPNAHNLDHKKEIQQWKKSFLCSLLFGIPVLIIMIYMQIPNGEHHGSMVLERNLIPGLSILNLLFFILCTFVQFLGGWYFYVQAYKSLRHRMANMDVLIVLATTIAYVYSCVILIVAIIEKAEESPVTFFDTPPMLFVFIALGRWLEHIAKSKTSEALAKLMSLQATEATVVTLGPDHSIVREEQVAVELVQRGDIIKVVPGGKFPVDGKVIEGSSMADESLITGEPMPVTKKPGSTVIAGSINAHGSVLVNATHVGSDTTLAQIVKLVEEAQMSKAPIQQLADKFSGYFVPFIIIISTVTLIVWITIGFINVDVIKKYFPNQSKHISKAELILRFAFQTSITVLSIACPCSLGLATPTAVMVGTGVAAQNGILIKGGKPLEMAHKIKTVMFDKTGTITYGVPKVMRVLLLGDTAVISLKKVLAIIGTAEASSEHPLGVAVTKYCKEELGTQSLGYCTDFQAVPGCGISCKVRGVEAILGTANQGFDNLDANRSGDSRAPLGDNAVITLLESCGPSPSHTYSVLIGNREWMRRNGLNIANDVNDAMTDHETKGQTAVLVAIDGVLCGMIAIADTVKQEAALAVHTLKSMGIDVVLITGDNRKTAKAIATQVGIKKVFAEVLPSHKVAKVQELQNGRRKVAMVGDGVNDSPALARADIGIAIGTGTDVAIEAADVVLIRNDLLDVVASIHLSKRTVRRIRINLILALIYNLLGIPIAAGAFMPVGLVLEPWMGSAAMAASSVSVLLSSLQLKCYKKPDTESYEARAQGHMKPLTPSQISVHIGMDDRRRDSSRLAPWDQISQVSFSSLASDKLPRRNGFVEEEGGKLSLLMNGGDEEHYI"

     misc_feature    527..718
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(545..553,560..562)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    782..973
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(800..808,815..817)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1118..1294
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(1136..1144,1151..1153)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1418..1609
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(1436..1444,1451..1453)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1820..2008
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(1835..1843,1850..1852)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    2054..2236
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(2063..2071,2078..2080)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    2300..4441
                     /gene="ATP7B"
                     /note="P-type heavy metal-transporting ATPase, similar to
                     human copper-transporting ATPases, ATP7A and ATP7B;
                     Region: P-type_ATPase_Cu-like; cd02094"
                     /db_xref="CDD:319783"
     misc_feature    order(3293..3295,3299..3301,4370..4372)
                     /gene="ATP7B"
                     /note="putative Cu binding site [ion binding]; other site"
                     /db_xref="CDD:319783"
     misc_feature    order(3425..3433,3635..3637,3821..3829,3917..3919,
                     4037..4045,4103..4105,4112..4114,4121..4123,4178..4180,
                     4187..4189)
                     /gene="ATP7B"
                     /note="putative ATP binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:319783"
ORIGIN      

agtccaagactggatctccagtaaaagcaagcagtaacttgcagaaagaagagaaacttttgcagagttactccatgggaatgccagaagtcaatacagttgaaagacagcacagatgccagccccatagcaagcagtacacaaatgcaaagtcctctggagatcctctgaaagtaatctttgaaagcagatgttaatgatgagttatgcagtagaaactaatgagcattgtttcagctccacctctaataatacagagtggtgattcttaggaaggaaacatagtatttctccttttgaactgcaattgcttgagtagtttgacagaagctcataccagtttattctctggaataacagaaattgaagaaacattaaaaagtccttgtaggctttgtcaaacactgattctcctcctggctgtgagctggagcctacaatgaaacataattttgcttttgacaacatgggctacgaggagagctttgaaaccactccctcttcatcttcccaagagcgtactgtgacaatcaacatcgtgggaatgacttgccaatcatgtgtgcaggcaatagaaggccggatttccaaggtgaagggcattgtgagtattaaagtctcccgtgaacagaacaatgctgttatcaagtatctgcagttggaaataagtccggatcagatttgcctggaaattcaggatatgggctttgatgccagcatagcagaagagaagttgacaacagcaaccataaatctgtcgagcttgaaagaagcagtagttaagcttcgcgtagaaggcatgacatgccagtcctgtgtcaccaacattgaaggaaagattaggaaactgcatggtgtagcaaaaatcaaggtgtcacttggtaaccaggaagcaattattgcttactatccttacatcattcagcctgatgacctcaagagacacatcaataacctggggtatgactgcaccattaaaagtaaatcagcccctttgaagctgggtgtccttgatctccagcgcttgcagaatgcaaaccccgagaagacaccagcaagttttgagggtgatgggttggatccactggttgctgagatgagcagcacagctacggtgactgtacagatagaaggcatgcactgcaagtcctgtgtcagaaacattgaagaaaatatatcagctattcctggaataaaaagtattaaagtgtctttggagcaaaaatgtgctgtggtagagtatagcccaaatttaatcaccctgtcagctctgcagcaagctattgaatcccttccacctgaaaactttaaagtatgtctccttagtggttcagaagcaaataaaggagcatctccatcacctgctttcacaggtgatctcatcaaacagccgctgcaagacccgacgtgcatggttgttattaagattgatggcatgacctgcaattcttgtgcacagtccatagaagggaccatatcagagagacaaggagtgcaacaggtagcagtttctctagctggcagtactggaaccatacattatgatccagctgtcactaacggcgaagagttaagagctgccatagaagacatgggatttgatgcttcagtgctgacagtgtttgtttggtgtacttctttatttattcaagatacctccactgcagaacataggcaccagcctaatgccagcaaagctgcggtgcagcctcgagctccagagcctcctcagcaaggctgtgtcttggatgctcttctagacagtcctcaccttgatgggtcaaaccagctcagtggagcaacagctgaaaagtgttttttgcaaatcacaggcatgacctgtgcatcatgtgtgtctaccatcgaaagaaatctgcagaaagaagatggaattgtttcagtgttggtagcgctgatggcaggtaaagcagagataaaatacaagccagaattcatacagccttttgaaatagcacggctgatccagaatttgggttttgaagctaccatcatagaagatcatgcagaaacagaagggcatgtggatcttcttattacagggatgacttgttcttcttgtgttcacaatattgaatccaaactcatgagaacaaatggcatattttatgcctcagttgcacttgcaacttgcaaagctcacatccagtttgatcctgaaattattggacctcgagatattataaaaataatcaaggaaattggttttcatgcttctgtggctagaagagatccaaatgcacataacctggatcataaaaaggaaatacagcagtggaagaaatctttcttgtgcagcctactgtttggtattcctgtcttaatcataatgatttatatgcaaatacccaatggtgagcaccatgggtctatggtgctggaacggaacctcattcctggattatctattttgaatcttctcttctttatcctgtgcacttttgttcagtttcttggcggatggtatttttatgtacaagcttacaaatcgctgaggcacaggatggccaacatggatgtgctcatcgtactggccacgacgattgcttatgtgtattcctgtgtgatcctgatagtggcgataatagaaaaggcagaggaaagccctgttactttctttgacactcctccgatgttgtttgtgttcattgcacttggcagatggctggaacacatagcaaagagtaagacctcggaagctcttgctaaacttatgtctcttcaagccacagaagccactgtggtgactcttggacctgaccactctattgtcagggaggaacaggtagctgttgaactggttcaaaggggtgatatcataaaagttgttcctggtggaaagttcccagtggatggaaaggtcattgaaggcagttctatggcagatgagtctctcattactggggaacctatgccagtcactaaaaagcctgggagcacagtgattgctggttctataaatgcacatggctcagttcttgttaatgctactcatgttggtagtgataccactctggcgcagattgtgaaattggtggaagaagctcaaatgtcaaaggcacccatccagcaactggcagataagtttagtggatactttgttccatttatcatcatcatttcaacagtgacattgatagtatggatcacaattggttttataaatgttgatgttattaaaaaatattttcctaatcagagcaaacacatttcaaaagctgaactaatactgaggtttgcatttcaaacctcaatcactgtgctgagcattgcatgcccttgctctttaggcctggctacccccacagctgtaatggtgggcacaggagtggctgcacagaatggtattctcatcaaaggtggaaaacccctggaaatggcacacaagatcaagactgtaatgtttgataaaactgggaccatcacctatggagttcctaaagtcatgagggtgcttttgttgggagacacagctgtgatctccctgaagaaggtactggcgattattggcactgcagaagccagcagtgagcatcctttaggagtggcagtcactaaatattgcaaagaggagcttggcactcagagtctgggatactgcaccgacttccaggcagtcccaggctgtggtatcagctgcaaagtcagaggagttgaggccatcctcggcacagccaatcagggtttcgataatctggatgctaacaggagtggagacagcagggctcctctgggagataacgcggtgatcacgctcttggaatcatgtggtccatcaccatctcatacatactcagtgttgatcggaaatcgtgagtggatgcgacgcaatggcttgaatattgcaaatgatgtgaatgatgcaatgacagaccatgaaacgaaaggacagactgctgtactggtggctatagatggtgtgttgtgtggaatgattgcaatagcagacactgtcaagcaggaggcagcccttgctgtgcatacactgaaaagcatgggaatagatgtggtgctgataacgggggacaacagaaaaactgcaaaagccattgctactcaggttgggatcaaaaaagtgtttgccgaggttcttccttctcacaaggttgccaaggtccaggaactccaaaatgggaggaggaaggttgcaatggttggtgatggagtcaatgattcccctgcactagccagggctgatattggaattgcaattggaacaggcaccgatgttgccattgaagcagcagatgttgttcttatccgaaatgacctgctggatgtagttgccagtattcatttatcgaagagaacagttcgaagaatacgaataaatctaattcttgccttaatttataatctgcttggaatacccatagcagcaggtgcgttcatgcctgttggccttgtgcttgagccttggatgggatcagctgcaatggcagcttcttctgtgtctgtcctgctgtcttccctgcagctgaaatgttacaagaagccagacacagaaagttatgaagctcgagctcaaggccacatgaagccactcactccttctcaaatcagtgttcatattggaatggatgatagaagaagggattcttccagactggctccttgggatcagattagccaagtgtctttctcttccttggcttcagacaagctgccaagacgtaatggttttgttgaggaggaagggggaaagttgtcattgctcatgaatggaggagatgaagaacactacatctgaagcagtgcattcttagtacagagaaatgtttctcttcaccagtgatgggagggattgacttgtttcatcaagagcttcaaggttgtacatgaagttactccttcggctcataagacaattgcaacccagctcaatgttgggttgtacagatggtggatttttttcaggtcaccagttatttctagttatggaaataatctgtggctctatgaactggcttctttgcgtacagcagttagtaaaataatgtaaaattgtaattttcagagtctaaaagtgtttctttctctgtgactctttgctaggcaccaaatttcatacttttcactctttctaactttattctttcaagagcacgtgaagcaaaagtattttcagagctgccaaatattaatgtgtttctaagtgaaattagcaatggcataagaatctctgtggtctgaagttgagtttttacacagaatcctaactagtcatgtcactgtgagaacactttgtatttaggattcatgtttgtctccttggaccaaaaatgctttgttatttcactggctataactctctgaagggtctgtttcaaagattttcacttgttttcaggttttgcatccttttgatgcacatttccattgctaaacttgttctgtgattcgcactgctgtcctagattttctcttttgctcaatatgagcccttttttctcctttccttgcacaagatatcttctatagttactattatgtatacagatattcctgtttgggacaaattcctttaagtcaccaggaacttttccattcctattgaagtccacaaaggcagaaaaattcctagtccaagttatccaagatacttgcaggaccctaggaagctcctgacagttgggcagttatctgtctctttcctctgacagattgaagaatttatgcctgtgtgagcaaaattggtatttaccgtgttatgactgagagcagaactgtcactggttggactccagcacagcagaacagagcgagtttattgcataagttaaccccagcttgctggttgcttaaaatggagtccaaagtttaaatgataaatgtggaaaaatggccttaaaatgtggggcttctatttgctgtcacatctaaataaatgacaggaggacttgaactaagaagatttgtaatagcaaatgtaaatttgtattcatgttttgaattggttttagtttccttctttgctctattttattgagaaatcaaggtgctgaacaacactttttttttgccttagcatcttttccaaagcttgcagtaactttatccccgtaaatgtcaaatttatcccttaacactttttagagtcaaggcagtaggaatcaatggctttggtgcactggatccagtcctggagtgctgtgttgtccaactgtgggactccaatgtaagcagaccacagttttataatctaaaataaaaactgaaagaagaggaaatgttatgctaaactatgtgaaataaccgcttactttcattgacttaaatataaagctatttccaacgcaggttcaaatcctgcttcttctaatgtagaaatgaaaaacaagtaagagaggaaaagaattgtgcttgaaacattggccaggtcttcctattctctcttcctctcagtattgtatttgaactgtctttagcaaactttgacagaactgtcttatatatgattataaatcagttttaaaactctctataaatagagattactttcacagcacacacacttttcaaatatgccataggtgcctatacatttccctgtgggaaagaggatctgctgtttcactgttctatgctttcttaccagtccttatggtaaaaatatggtttgttttttttttaacaaacaaacaaataaataactttgtgtctttgtttttcttttttctttgttgtcttttttccttttcctttttcttttcctttttcttttttttcaggggtacagaataaaaaaaagagcataagcagtgattgttggcttgcaggatacatatgcacaaggttttgc

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