LOCUS       XM_032678936            6747 bp    mRNA    linear   VRT 29-FEB-2020
DEFINITION  PREDICTED: Chiroxiphia lanceolata ATPase copper transporting beta
            (ATP7B), transcript variant X3, mRNA.
ACCESSION   XM_032678936
VERSION     XM_032678936.1
DBLINK      BioProject: PRJNA603801
KEYWORDS    RefSeq.
SOURCE      Chiroxiphia lanceolata (lance-tailed manakin)
  ORGANISM  Chiroxiphia lanceolata
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Passeriformes; Pipridae;
            Chiroxiphia.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045638.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Chiroxiphia lanceolata Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6747
                     /organism="Chiroxiphia lanceolata"
                     /mol_type="mRNA"
                     /isolate="bChiLan1"
                     /db_xref="taxon:296741"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="isolated red blood cells"
                     /dev_stage="adult"
                     /country="Panama: Isla Boca Btava"
                     /lat_lon="8.2166658 N 82.2666656 W"
                     /collection_date="14-Apr-2017"
                     /collected_by="Emily DuVal"
     gene            1..6747
                     /gene="ATP7B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 ESTs, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116782376"
     CDS             253..4695
                     /gene="ATP7B"
                     /codon_start=1
                     /product="copper-transporting ATPase 2 isoform X3"
                     /protein_id="XP_032534827.1"
                     /db_xref="GeneID:116782376"
                     /translation="

MERKQDSKMKRELSYLATLNDRNITLMSIRKQQAAHDVPELLIIGEKSKTGSPVKASSNLQKEEKLLQSYSMGMPEVNTVERQALSNTDSPPGCELEPTMKHNFAFDNMGYEESFETTPSSSSQERTVTINIVGMTCQSCVQAIEGRISKVKGIVSIKVSREQNNAVIKYLQLEISPDQICLEIQDMGFDASIAEEKLTTATINLSSLKEAVVKLRVEGMTCQSCVTNIEGKIRKLHGVAKIKVSLGNQEAIIAYYPYIIQPDDLKRHINNLGYDCTIKSKSAPLKLGVLDLQRLQNANPEKTPASFEGDGLDPLVAEMSSTATVTVQIEGMHCKSCVRNIEENISAIPGIKSIKVSLEQKCAVVEYSPNLITLSALQQAIESLPPENFKVCLLSGSEANKGASPSPAFTGDLIKQPLQDPTCMVVIKIDGMTCNSCAQSIEGTISERQGVQQVAVSLAGSTGTIHYDPAVTNGEELRAAIEDMGFDASVLTVFVWCTSLFIQDTSTAEHRHQPNASKAAVQPRAPEPPQQGCVLDALLDSPHLDGSNQLSGATAEKCFLQITGMTCASCVSTIERNLQKEDGIVSVLVALMAGKAEIKYKPEFIQPFEIARLIQNLGFEATIIEDHAETEGHVDLLITGMTCSSCVHNIESKLMRTNGIFYASVALATCKAHIQFDPEIIGPRDIIKIIKEIGFHASVARRDPNAHNLDHKKEIQQWKKSFLCSLLFGIPVLIIMIYMQIPNGEHHGSMVLERNLIPGLSILNLLFFILCTFVQFLGGWYFYVQAYKSLRHRMANMDVLIVLATTIAYVYSCVILIVAIIEKAEESPVTFFDTPPMLFVFIALGRWLEHIAKSKTSEALAKLMSLQATEATVVTLGPDHSIVREEQVAVELVQRGDIIKVVPGGKFPVDGKVIEGSSMADESLITGEPMPVTKKPGSTVIAGSINAHGSVLVNATHVGSDTTLAQIVKLVEEAQMSKAPIQQLADKFSGYFVPFIIIISTVTLIVWITIGFINVDVIKKYFPNQSKHISKAELILRFAFQTSITVLSIACPCSLGLATPTAVMVGTGVAAQNGILIKGGKPLEMAHKELGTQSLGYCTDFQAVPGCGISCKVRGVEAILGTANQGFDNLDANRSGDSRAPLGDNAVITLLESCGPSPSHTYSVLIGNREWMRRNGLNIANDVNDAMTDHETKGQTAVLVAIDGVLCGMIAIADTVKQEAALAVHTLKSMGIDVVLITGDNRKTAKAIATQVGIKKVFAEVLPSHKVAKVQELQNGRRKVAMVGDGVNDSPALARADIGIAIGTGTDVAIEAADVVLIRNDLLDVVASIHLSKRTVRRIRINLILALIYNLLGIPIAAGAFMPVGLVLEPWMGSAAMAASSVSVLLSSLQLKCYKKPDTESYEARAQGHMKPLTPSQISVHIGMDDRRRDSSRLAPWDQISQVSFSSLASDKLPRRNGFVEEEGGKLSLLMNGGDEEHYI"

     misc_feature    637..828
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(655..663,670..672)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    892..1083
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(910..918,925..927)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1228..1404
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(1246..1254,1261..1263)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1528..1719
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(1546..1554,1561..1563)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1930..2118
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(1945..1953,1960..1962)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    2164..2346
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(2173..2181,2188..2190)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    2410..4368
                     /gene="ATP7B"
                     /note="P-type heavy metal-transporting ATPase, similar to
                     human copper-transporting ATPases, ATP7A and ATP7B;
                     Region: P-type_ATPase_Cu-like; cd02094"
                     /db_xref="CDD:319783"
     misc_feature    order(3403..3405,3409..3411,4297..4299)
                     /gene="ATP7B"
                     /note="putative Cu binding site [ion binding]; other site"
                     /db_xref="CDD:319783"
ORIGIN      

gatgccaattggtgggaaacatttaaactggcagggaaagcaggtagctgagtgcagcgagcagtgtacacaaggatcacaggttacatctgggattttgtgatgaatgcctaatgagcatgttgattagacgggcagaactctccaggctgttgtaaacgtagctgaaggaagcgtggctgataagacactgaataaccgctctcgtaaagcttttgtttggcactgcaatatttaaaatccagagagataatggagagaaaacaggacagtaaaatgaaaagggaactgtcctacttagctactttaaacgacagaaacataaccctgatgtctattcgtaagcagcaggcagctcatgatgtgcctgaactactgattattggtgaaaagtccaagactggatctccagtaaaagcaagcagtaacttgcagaaagaagagaaacttttgcagagttactccatgggaatgccagaagtcaatacagttgaaagacaggctttgtcaaacactgattctcctcctggctgtgagctggagcctacaatgaaacataattttgcttttgacaacatgggctacgaggagagctttgaaaccactccctcttcatcttcccaagagcgtactgtgacaatcaacatcgtgggaatgacttgccaatcatgtgtgcaggcaatagaaggccggatttccaaggtgaagggcattgtgagtattaaagtctcccgtgaacagaacaatgctgttatcaagtatctgcagttggaaataagtccggatcagatttgcctggaaattcaggatatgggctttgatgccagcatagcagaagagaagttgacaacagcaaccataaatctgtcgagcttgaaagaagcagtagttaagcttcgcgtagaaggcatgacatgccagtcctgtgtcaccaacattgaaggaaagattaggaaactgcatggtgtagcaaaaatcaaggtgtcacttggtaaccaggaagcaattattgcttactatccttacatcattcagcctgatgacctcaagagacacatcaataacctggggtatgactgcaccattaaaagtaaatcagcccctttgaagctgggtgtccttgatctccagcgcttgcagaatgcaaaccccgagaagacaccagcaagttttgagggtgatgggttggatccactggttgctgagatgagcagcacagctacggtgactgtacagatagaaggcatgcactgcaagtcctgtgtcagaaacattgaagaaaatatatcagctattcctggaataaaaagtattaaagtgtctttggagcaaaaatgtgctgtggtagagtatagcccaaatttaatcaccctgtcagctctgcagcaagctattgaatcccttccacctgaaaactttaaagtatgtctccttagtggttcagaagcaaataaaggagcatctccatcacctgctttcacaggtgatctcatcaaacagccgctgcaagacccgacgtgcatggttgttattaagattgatggcatgacctgcaattcttgtgcacagtccatagaagggaccatatcagagagacaaggagtgcaacaggtagcagtttctctagctggcagtactggaaccatacattatgatccagctgtcactaacggcgaagagttaagagctgccatagaagacatgggatttgatgcttcagtgctgacagtgtttgtttggtgtacttctttatttattcaagatacctccactgcagaacataggcaccagcctaatgccagcaaagctgcggtgcagcctcgagctccagagcctcctcagcaaggctgtgtcttggatgctcttctagacagtcctcaccttgatgggtcaaaccagctcagtggagcaacagctgaaaagtgttttttgcaaatcacaggcatgacctgtgcatcatgtgtgtctaccatcgaaagaaatctgcagaaagaagatggaattgtttcagtgttggtagcgctgatggcaggtaaagcagagataaaatacaagccagaattcatacagccttttgaaatagcacggctgatccagaatttgggttttgaagctaccatcatagaagatcatgcagaaacagaagggcatgtggatcttcttattacagggatgacttgttcttcttgtgttcacaatattgaatccaaactcatgagaacaaatggcatattttatgcctcagttgcacttgcaacttgcaaagctcacatccagtttgatcctgaaattattggacctcgagatattataaaaataatcaaggaaattggttttcatgcttctgtggctagaagagatccaaatgcacataacctggatcataaaaaggaaatacagcagtggaagaaatctttcttgtgcagcctactgtttggtattcctgtcttaatcataatgatttatatgcaaatacccaatggtgagcaccatgggtctatggtgctggaacggaacctcattcctggattatctattttgaatcttctcttctttatcctgtgcacttttgttcagtttcttggcggatggtatttttatgtacaagcttacaaatcgctgaggcacaggatggccaacatggatgtgctcatcgtactggccacgacgattgcttatgtgtattcctgtgtgatcctgatagtggcgataatagaaaaggcagaggaaagccctgttactttctttgacactcctccgatgttgtttgtgttcattgcacttggcagatggctggaacacatagcaaagagtaagacctcggaagctcttgctaaacttatgtctcttcaagccacagaagccactgtggtgactcttggacctgaccactctattgtcagggaggaacaggtagctgttgaactggttcaaaggggtgatatcataaaagttgttcctggtggaaagttcccagtggatggaaaggtcattgaaggcagttctatggcagatgagtctctcattactggggaacctatgccagtcactaaaaagcctgggagcacagtgattgctggttctataaatgcacatggctcagttcttgttaatgctactcatgttggtagtgataccactctggcgcagattgtgaaattggtggaagaagctcaaatgtcaaaggcacccatccagcaactggcagataagtttagtggatactttgttccatttatcatcatcatttcaacagtgacattgatagtatggatcacaattggttttataaatgttgatgttattaaaaaatattttcctaatcagagcaaacacatttcaaaagctgaactaatactgaggtttgcatttcaaacctcaatcactgtgctgagcattgcatgcccttgctctttaggcctggctacccccacagctgtaatggtgggcacaggagtggctgcacagaatggtattctcatcaaaggtggaaaacccctggaaatggcacacaaggagcttggcactcagagtctgggatactgcaccgacttccaggcagtcccaggctgtggtatcagctgcaaagtcagaggagttgaggccatcctcggcacagccaatcagggtttcgataatctggatgctaacaggagtggagacagcagggctcctctgggagataacgcggtgatcacgctcttggaatcatgtggtccatcaccatctcatacatactcagtgttgatcggaaatcgtgagtggatgcgacgcaatggcttgaatattgcaaatgatgtgaatgatgcaatgacagaccatgaaacgaaaggacagactgctgtactggtggctatagatggtgtgttgtgtggaatgattgcaatagcagacactgtcaagcaggaggcagcccttgctgtgcatacactgaaaagcatgggaatagatgtggtgctgataacgggggacaacagaaaaactgcaaaagccattgctactcaggttgggatcaaaaaagtgtttgccgaggttcttccttctcacaaggttgccaaggtccaggaactccaaaatgggaggaggaaggttgcaatggttggtgatggagtcaatgattcccctgcactagccagggctgatattggaattgcaattggaacaggcaccgatgttgccattgaagcagcagatgttgttcttatccgaaatgacctgctggatgtagttgccagtattcatttatcgaagagaacagttcgaagaatacgaataaatctaattcttgccttaatttataatctgcttggaatacccatagcagcaggtgcgttcatgcctgttggccttgtgcttgagccttggatgggatcagctgcaatggcagcttcttctgtgtctgtcctgctgtcttccctgcagctgaaatgttacaagaagccagacacagaaagttatgaagctcgagctcaaggccacatgaagccactcactccttctcaaatcagtgttcatattggaatggatgatagaagaagggattcttccagactggctccttgggatcagattagccaagtgtctttctcttccttggcttcagacaagctgccaagacgtaatggttttgttgaggaggaagggggaaagttgtcattgctcatgaatggaggagatgaagaacactacatctgaagcagtgcattcttagtacagagaaatgtttctcttcaccagtgatgggagggattgacttgtttcatcaagagcttcaaggttgtacatgaagttactccttcggctcataagacaattgcaacccagctcaatgttgggttgtacagatggtggatttttttcaggtcaccagttatttctagttatggaaataatctgtggctctatgaactggcttctttgcgtacagcagttagtaaaataatgtaaaattgtaattttcagagtctaaaagtgtttctttctctgtgactctttgctaggcaccaaatttcatacttttcactctttctaactttattctttcaagagcacgtgaagcaaaagtattttcagagctgccaaatattaatgtgtttctaagtgaaattagcaatggcataagaatctctgtggtctgaagttgagtttttacacagaatcctaactagtcatgtcactgtgagaacactttgtatttaggattcatgtttgtctccttggaccaaaaatgctttgttatttcactggctataactctctgaagggtctgtttcaaagattttcacttgttttcaggttttgcatccttttgatgcacatttccattgctaaacttgttctgtgattcgcactgctgtcctagattttctcttttgctcaatatgagcccttttttctcctttccttgcacaagatatcttctatagttactattatgtatacagatattcctgtttgggacaaattcctttaagtcaccaggaacttttccattcctattgaagtccacaaaggcagaaaaattcctagtccaagttatccaagatacttgcaggaccctaggaagctcctgacagttgggcagttatctgtctctttcctctgacagattgaagaatttatgcctgtgtgagcaaaattggtatttaccgtgttatgactgagagcagaactgtcactggttggactccagcacagcagaacagagcgagtttattgcataagttaaccccagcttgctggttgcttaaaatggagtccaaagtttaaatgataaatgtggaaaaatggccttaaaatgtggggcttctatttgctgtcacatctaaataaatgacaggaggacttgaactaagaagatttgtaatagcaaatgtaaatttgtattcatgttttgaattggttttagtttccttctttgctctattttattgagaaatcaaggtgctgaacaacactttttttttgccttagcatcttttccaaagcttgcagtaactttatccccgtaaatgtcaaatttatcccttaacactttttagagtcaaggcagtaggaatcaatggctttggtgcactggatccagtcctggagtgctgtgttgtccaactgtgggactccaatgtaagcagaccacagttttataatctaaaataaaaactgaaagaagaggaaatgttatgctaaactatgtgaaataaccgcttactttcattgacttaaatataaagctatttccaacgcaggttcaaatcctgcttcttctaatgtagaaatgaaaaacaagtaagagaggaaaagaattgtgcttgaaacattggccaggtcttcctattctctcttcctctcagtattgtatttgaactgtctttagcaaactttgacagaactgtcttatatatgattataaatcagttttaaaactctctataaatagagattactttcacagcacacacacttttcaaatatgccataggtgcctatacatttccctgtgggaaagaggatctgctgtttcactgttctatgctttcttaccagtccttatggtaaaaatatggtttgttttttttttaacaaacaaacaaataaataactttgtgtctttgtttttcttttttctttgttgtcttttttccttttcctttttcttttcctttttcttttttttcaggggtacagaataaaaaaaagagcataagcagtgattgttggcttgcaggatacatatgcacaaggttttgc

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