LOCUS       XM_032678933            6929 bp    mRNA    linear   VRT 29-FEB-2020
DEFINITION  PREDICTED: Chiroxiphia lanceolata ATPase copper transporting beta
            (ATP7B), transcript variant X1, mRNA.
ACCESSION   XM_032678933
VERSION     XM_032678933.1
DBLINK      BioProject: PRJNA603801
KEYWORDS    RefSeq.
SOURCE      Chiroxiphia lanceolata (lance-tailed manakin)
  ORGANISM  Chiroxiphia lanceolata
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Passeriformes; Pipridae;
            Chiroxiphia.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045638.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Chiroxiphia lanceolata Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6929
                     /organism="Chiroxiphia lanceolata"
                     /mol_type="mRNA"
                     /isolate="bChiLan1"
                     /db_xref="taxon:296741"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="isolated red blood cells"
                     /dev_stage="adult"
                     /country="Panama: Isla Boca Btava"
                     /lat_lon="8.2166658 N 82.2666656 W"
                     /collection_date="14-Apr-2017"
                     /collected_by="Emily DuVal"
     gene            1..6929
                     /gene="ATP7B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 ESTs, 7 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:116782376"
     CDS             252..4877
                     /gene="ATP7B"
                     /codon_start=1
                     /product="copper-transporting ATPase 2 isoform X1"
                     /protein_id="XP_032534824.1"
                     /db_xref="GeneID:116782376"
                     /translation="

MERKQDSKMKRELSYLATLNDRNITLMSIRKQQAAHDVPELLIIGEKSKTGSPVKASSNLQKEEKLLQSYSMGMPEVNTVERQALSNTDSPPGCELEPTMKHNFAFDNMGYEESFETTPSSSSQERTVTINIVGMTCQSCVQAIEGRISKVKGIVSIKVSREQNNAVIKYLQLEISPDQICLEIQDMGFDASIAEEKLTTATINLSSLKEAVVKLRVEGMTCQSCVTNIEGKIRKLHGVAKIKVSLGNQEAIIAYYPYIIQPDDLKRHINNLGYDCTIKSKSAPLKLGVLDLQRLQNANPEKTPASFEGDGLDPLVAEMSSTATVTVQIEGMHCKSCVRNIEENISAIPGIKSIKVSLEQKCAVVEYSPNLITLSALQQAIESLPPENFKVCLLSGSEANKGASPSPAFTGDLIKQPLQDPTCMVVIKIDGMTCNSCAQSIEGTISERQGVQQVAVSLAGSTGTIHYDPAVTNGEELRAAIEDMGFDASVLTVFVWCTSLFIQDTSTAEHRHQPNASKAAVQPRAPEPPQQGCVLDALLDSPHLDGSNQLSGATAEKCFLQITGMTCASCVSTIERNLQKEDGIVSVLVALMAGKAEIKYKPEFIQPFEIARLIQNLGFEATIIEDHAETEGHVDLLITGMTCSSCVHNIESKLMRTNGIFYASVALATCKAHIQFDPEIIGPRDIIKIIKEIGFHASVARRDPNAHNLDHKKEIQQWKKSFLCSLLFGIPVLIIMIYMQIPNGEHHGSMVLERNLIPGLSILNLLFFILCTFVQFLGGWYFYVQAYKSLRHRMANMDVLIVLATTIAYVYSCVILIVAIIEKAEESPVTFFDTPPMLFVFIALGRWLEHIAKSKTSEALAKLMSLQATEATVVTLGPDHSIVREEQVAVELVQRGDIIKVVPGGKFPVDGKVIEGSSMADESLITGEPMPVTKKPGSTVIAGSINAHGSVLVNATHVGSDTTLAQIVKLVEEAQMSKAPIQQLADKFSGYFVPFIIIISTVTLIVWITIGFINVDVIKKYFPNQSKHISKAELILRFAFQTSITVLSIACPCSLGLATPTAVMVGTGVAAQNGILIKGGKPLEMAHKIKTVMFDKTGTITYGVPKVMRVLLLGDTAVISLKKVLAIIGTAEASSEHPLGVAVTKYCKEELGTQSLGYCTDFQAVPGCGISCKVRGVEAILGTANQGFDNLDANRSGDSRAPLGDNAVITLLESCGPSPSHTYSVLIGNREWMRRNGLNIANDVNDAMTDHETKGQTAVLVAIDGVLCGMIAIADTVKQEAALAVHTLKSMGIDVVLITGDNRKTAKAIATQVGIKKVFAEVLPSHKVAKVQELQNGRRKVAMVGDGVNDSPALARADIGIAIGTGTDVAIEAADVVLIRNDLLDVVASIHLSKRTVRRIRINLILALIYNLLGIPIAAGAFMPVGLVLEPWMGSAAMAASSVSVLLSSLQLKCYKKPDTESYEARAQGHMKPLTPSQISVHIGMDDRRRDSSRLAPWDQISQVSFSSLASDKLPRRNGFVEEEGGKLSLLMNGGDEEHYI"

     misc_feature    636..827
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(654..662,669..671)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    891..1082
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(909..917,924..926)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1227..1403
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(1245..1253,1260..1262)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1527..1718
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(1545..1553,1560..1562)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1929..2117
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(1944..1952,1959..1961)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    2163..2345
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(2172..2180,2187..2189)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    2409..4550
                     /gene="ATP7B"
                     /note="P-type heavy metal-transporting ATPase, similar to
                     human copper-transporting ATPases, ATP7A and ATP7B;
                     Region: P-type_ATPase_Cu-like; cd02094"
                     /db_xref="CDD:319783"
     misc_feature    order(3402..3404,3408..3410,4479..4481)
                     /gene="ATP7B"
                     /note="putative Cu binding site [ion binding]; other site"
                     /db_xref="CDD:319783"
     misc_feature    order(3534..3542,3744..3746,3930..3938,4026..4028,
                     4146..4154,4212..4214,4221..4223,4230..4232,4287..4289,
                     4296..4298)
                     /gene="ATP7B"
                     /note="putative ATP binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:319783"
ORIGIN      

atgccaattggtgggaaacatttaaactggcagggaaagcaggtagctgagtgcagcgagcagtgtacacaaggatcacaggttacatctgggattttgtgatgaatgcctaatgagcatgttgattagacgggcagaactctccaggctgttgtaaacgtagctgaaggaagcgtggctgataagacactgaataaccgctctcgtaaagcttttgtttggcactgcaatatttaaaatccagagagataatggagagaaaacaggacagtaaaatgaaaagggaactgtcctacttagctactttaaacgacagaaacataaccctgatgtctattcgtaagcagcaggcagctcatgatgtgcctgaactactgattattggtgaaaagtccaagactggatctccagtaaaagcaagcagtaacttgcagaaagaagagaaacttttgcagagttactccatgggaatgccagaagtcaatacagttgaaagacaggctttgtcaaacactgattctcctcctggctgtgagctggagcctacaatgaaacataattttgcttttgacaacatgggctacgaggagagctttgaaaccactccctcttcatcttcccaagagcgtactgtgacaatcaacatcgtgggaatgacttgccaatcatgtgtgcaggcaatagaaggccggatttccaaggtgaagggcattgtgagtattaaagtctcccgtgaacagaacaatgctgttatcaagtatctgcagttggaaataagtccggatcagatttgcctggaaattcaggatatgggctttgatgccagcatagcagaagagaagttgacaacagcaaccataaatctgtcgagcttgaaagaagcagtagttaagcttcgcgtagaaggcatgacatgccagtcctgtgtcaccaacattgaaggaaagattaggaaactgcatggtgtagcaaaaatcaaggtgtcacttggtaaccaggaagcaattattgcttactatccttacatcattcagcctgatgacctcaagagacacatcaataacctggggtatgactgcaccattaaaagtaaatcagcccctttgaagctgggtgtccttgatctccagcgcttgcagaatgcaaaccccgagaagacaccagcaagttttgagggtgatgggttggatccactggttgctgagatgagcagcacagctacggtgactgtacagatagaaggcatgcactgcaagtcctgtgtcagaaacattgaagaaaatatatcagctattcctggaataaaaagtattaaagtgtctttggagcaaaaatgtgctgtggtagagtatagcccaaatttaatcaccctgtcagctctgcagcaagctattgaatcccttccacctgaaaactttaaagtatgtctccttagtggttcagaagcaaataaaggagcatctccatcacctgctttcacaggtgatctcatcaaacagccgctgcaagacccgacgtgcatggttgttattaagattgatggcatgacctgcaattcttgtgcacagtccatagaagggaccatatcagagagacaaggagtgcaacaggtagcagtttctctagctggcagtactggaaccatacattatgatccagctgtcactaacggcgaagagttaagagctgccatagaagacatgggatttgatgcttcagtgctgacagtgtttgtttggtgtacttctttatttattcaagatacctccactgcagaacataggcaccagcctaatgccagcaaagctgcggtgcagcctcgagctccagagcctcctcagcaaggctgtgtcttggatgctcttctagacagtcctcaccttgatgggtcaaaccagctcagtggagcaacagctgaaaagtgttttttgcaaatcacaggcatgacctgtgcatcatgtgtgtctaccatcgaaagaaatctgcagaaagaagatggaattgtttcagtgttggtagcgctgatggcaggtaaagcagagataaaatacaagccagaattcatacagccttttgaaatagcacggctgatccagaatttgggttttgaagctaccatcatagaagatcatgcagaaacagaagggcatgtggatcttcttattacagggatgacttgttcttcttgtgttcacaatattgaatccaaactcatgagaacaaatggcatattttatgcctcagttgcacttgcaacttgcaaagctcacatccagtttgatcctgaaattattggacctcgagatattataaaaataatcaaggaaattggttttcatgcttctgtggctagaagagatccaaatgcacataacctggatcataaaaaggaaatacagcagtggaagaaatctttcttgtgcagcctactgtttggtattcctgtcttaatcataatgatttatatgcaaatacccaatggtgagcaccatgggtctatggtgctggaacggaacctcattcctggattatctattttgaatcttctcttctttatcctgtgcacttttgttcagtttcttggcggatggtatttttatgtacaagcttacaaatcgctgaggcacaggatggccaacatggatgtgctcatcgtactggccacgacgattgcttatgtgtattcctgtgtgatcctgatagtggcgataatagaaaaggcagaggaaagccctgttactttctttgacactcctccgatgttgtttgtgttcattgcacttggcagatggctggaacacatagcaaagagtaagacctcggaagctcttgctaaacttatgtctcttcaagccacagaagccactgtggtgactcttggacctgaccactctattgtcagggaggaacaggtagctgttgaactggttcaaaggggtgatatcataaaagttgttcctggtggaaagttcccagtggatggaaaggtcattgaaggcagttctatggcagatgagtctctcattactggggaacctatgccagtcactaaaaagcctgggagcacagtgattgctggttctataaatgcacatggctcagttcttgttaatgctactcatgttggtagtgataccactctggcgcagattgtgaaattggtggaagaagctcaaatgtcaaaggcacccatccagcaactggcagataagtttagtggatactttgttccatttatcatcatcatttcaacagtgacattgatagtatggatcacaattggttttataaatgttgatgttattaaaaaatattttcctaatcagagcaaacacatttcaaaagctgaactaatactgaggtttgcatttcaaacctcaatcactgtgctgagcattgcatgcccttgctctttaggcctggctacccccacagctgtaatggtgggcacaggagtggctgcacagaatggtattctcatcaaaggtggaaaacccctggaaatggcacacaagatcaagactgtaatgtttgataaaactgggaccatcacctatggagttcctaaagtcatgagggtgcttttgttgggagacacagctgtgatctccctgaagaaggtactggcgattattggcactgcagaagccagcagtgagcatcctttaggagtggcagtcactaaatattgcaaagaggagcttggcactcagagtctgggatactgcaccgacttccaggcagtcccaggctgtggtatcagctgcaaagtcagaggagttgaggccatcctcggcacagccaatcagggtttcgataatctggatgctaacaggagtggagacagcagggctcctctgggagataacgcggtgatcacgctcttggaatcatgtggtccatcaccatctcatacatactcagtgttgatcggaaatcgtgagtggatgcgacgcaatggcttgaatattgcaaatgatgtgaatgatgcaatgacagaccatgaaacgaaaggacagactgctgtactggtggctatagatggtgtgttgtgtggaatgattgcaatagcagacactgtcaagcaggaggcagcccttgctgtgcatacactgaaaagcatgggaatagatgtggtgctgataacgggggacaacagaaaaactgcaaaagccattgctactcaggttgggatcaaaaaagtgtttgccgaggttcttccttctcacaaggttgccaaggtccaggaactccaaaatgggaggaggaaggttgcaatggttggtgatggagtcaatgattcccctgcactagccagggctgatattggaattgcaattggaacaggcaccgatgttgccattgaagcagcagatgttgttcttatccgaaatgacctgctggatgtagttgccagtattcatttatcgaagagaacagttcgaagaatacgaataaatctaattcttgccttaatttataatctgcttggaatacccatagcagcaggtgcgttcatgcctgttggccttgtgcttgagccttggatgggatcagctgcaatggcagcttcttctgtgtctgtcctgctgtcttccctgcagctgaaatgttacaagaagccagacacagaaagttatgaagctcgagctcaaggccacatgaagccactcactccttctcaaatcagtgttcatattggaatggatgatagaagaagggattcttccagactggctccttgggatcagattagccaagtgtctttctcttccttggcttcagacaagctgccaagacgtaatggttttgttgaggaggaagggggaaagttgtcattgctcatgaatggaggagatgaagaacactacatctgaagcagtgcattcttagtacagagaaatgtttctcttcaccagtgatgggagggattgacttgtttcatcaagagcttcaaggttgtacatgaagttactccttcggctcataagacaattgcaacccagctcaatgttgggttgtacagatggtggatttttttcaggtcaccagttatttctagttatggaaataatctgtggctctatgaactggcttctttgcgtacagcagttagtaaaataatgtaaaattgtaattttcagagtctaaaagtgtttctttctctgtgactctttgctaggcaccaaatttcatacttttcactctttctaactttattctttcaagagcacgtgaagcaaaagtattttcagagctgccaaatattaatgtgtttctaagtgaaattagcaatggcataagaatctctgtggtctgaagttgagtttttacacagaatcctaactagtcatgtcactgtgagaacactttgtatttaggattcatgtttgtctccttggaccaaaaatgctttgttatttcactggctataactctctgaagggtctgtttcaaagattttcacttgttttcaggttttgcatccttttgatgcacatttccattgctaaacttgttctgtgattcgcactgctgtcctagattttctcttttgctcaatatgagcccttttttctcctttccttgcacaagatatcttctatagttactattatgtatacagatattcctgtttgggacaaattcctttaagtcaccaggaacttttccattcctattgaagtccacaaaggcagaaaaattcctagtccaagttatccaagatacttgcaggaccctaggaagctcctgacagttgggcagttatctgtctctttcctctgacagattgaagaatttatgcctgtgtgagcaaaattggtatttaccgtgttatgactgagagcagaactgtcactggttggactccagcacagcagaacagagcgagtttattgcataagttaaccccagcttgctggttgcttaaaatggagtccaaagtttaaatgataaatgtggaaaaatggccttaaaatgtggggcttctatttgctgtcacatctaaataaatgacaggaggacttgaactaagaagatttgtaatagcaaatgtaaatttgtattcatgttttgaattggttttagtttccttctttgctctattttattgagaaatcaaggtgctgaacaacactttttttttgccttagcatcttttccaaagcttgcagtaactttatccccgtaaatgtcaaatttatcccttaacactttttagagtcaaggcagtaggaatcaatggctttggtgcactggatccagtcctggagtgctgtgttgtccaactgtgggactccaatgtaagcagaccacagttttataatctaaaataaaaactgaaagaagaggaaatgttatgctaaactatgtgaaataaccgcttactttcattgacttaaatataaagctatttccaacgcaggttcaaatcctgcttcttctaatgtagaaatgaaaaacaagtaagagaggaaaagaattgtgcttgaaacattggccaggtcttcctattctctcttcctctcagtattgtatttgaactgtctttagcaaactttgacagaactgtcttatatatgattataaatcagttttaaaactctctataaatagagattactttcacagcacacacacttttcaaatatgccataggtgcctatacatttccctgtgggaaagaggatctgctgtttcactgttctatgctttcttaccagtccttatggtaaaaatatggtttgttttttttttaacaaacaaacaaataaataactttgtgtctttgtttttcttttttctttgttgtcttttttccttttcctttttcttttcctttttcttttttttcaggggtacagaataaaaaaaagagcataagcagtgattgttggcttgcaggatacatatgcacaaggttttgc

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