2024-04-23 18:56:55, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_032669949 4124 bp mRNA linear INV 27-FEB-2020 DEFINITION PREDICTED: Danaus plexippus plexippus copper-transporting ATPase 2 (LOC116776693), transcript variant X3, mRNA. ACCESSION XM_032669949 VERSION XM_032669949.1 DBLINK BioProject: PRJNA607945 KEYWORDS RefSeq. SOURCE Danaus plexippus plexippus ORGANISM Danaus plexippus plexippus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Danainae; Danaini; Danaina; Danaus; Danaus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_045834.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Danaus plexippus plexippus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4124 /organism="Danaus plexippus plexippus" /mol_type="mRNA" /isolate="F-2" /sub_species="plexippus" /db_xref="taxon:278856" /chromosome="28" /sex="female" /country="USA: Greenfield, Massachusetts" /lat_lon="42.98 N 73.00 W" /collection_date="Oct-2008" gene 1..4124 /gene="LOC116776693" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:116776693" CDS 321..3956 /gene="LOC116776693" /codon_start=1 /product="copper-transporting ATPase 2 isoform X3" /protein_id="XP_032525840.1" /db_xref="GeneID:116776693" /translation="
MLSRGVKYKLLEDGDGGDPSPDLVSVRVPIHGMTCQSCVRSIEGSVRELPGIHYVKVELSEKAGYFKYDPSACSADSIRSHIEDMGFEVTDNSDGETRNLLNPEIPTDTLIDMSTDASLLLAVVGMTCQSCVDSIQGALKDVPGVTSSTVSLAQGTALVTFTPAEVTPDLIKDTIYNLGFDVDIISVTDKEAENKDQGGSGDRRARAGGGEATAKTNGNAPSEISRCTLEVKGMTCASCVAAIEKHCAKLTGVHSIVIALLAAKAEVRYEPAKISAAAIADSITELGFSSELISDSGAPKDLNLLIKGMTCASCVNKIEKSLMKLTGVVSCSVALTTSKGKVKYDPEVIGARRICDAVGDLGFEANVVGSQHKGTANYLEHKEEIRRWRNAFLVSLIFGAPCMAAMTYFMLGMGHHSARDMCCVLPGLSLENLLLWLLATPVQFIGGWHFYKQAYKALRHGTSNMDVLISMTTTISYLYSVGAVSAAMALQKDTSPLTFFDTPPMLLVFVSLGRWLEHIAKGKTSEALSKLLSLKPTEAVLVTLDPEGREISEKNIPVDLVERGDILKVVPGAKIPVDGKVISGQSTCDESLITGESMPVAKTKDSLVIGGSMNQHGALLVRATHTGEASTLAQIVRLVEDAQSSKAPVQRLADTIASYFVPMVVFLSLLTLVCWTISGALDVDRIKAITPEIYRDAGFSDWELIVQTAFHFALSVLAIACPCALGLATPTAVMVATGVGARLGLLIKGAEPLENAHKVKTVIFDKTGTVTRGDTSVARVSILTGDPSTLPEVITCILTAELNSEHPVASAIVRWCTSVVGSPRALVRGFTAAPGCGLRARVLLTERPPGLDKDGVLSHLGGVPVELVGGEGDAALSSAQAAARLQRVIKAAEQGEEVEQVVLIGNREWMHRNGVMVPRRVQEQLRTDEELGRTAVLVAINDQLVCTIGVSDQVKPEAHLAVYCLKKMGLEVCLLTGDNKKTAAAIARQVGINKVFAEVLPSHKVAKVQELQDKGQKVAMVGDGVNDSPALARADVGVAIASGTDVAVEAADLVLMRSDLLDVVSCLQLSRVTVRRIRMNFVFASVYNLLGIPLASGAFALYGLQLQPWMASAAMAMSSVSVVCSSLLLKTFRKPTMEQLKTPEYLQSLHQEQLEQLEAVAVHRGLDEKLDPQDKGTPLAKLFTRSKSTDDFLLREEDDLLTVSFIPKRSS"
misc_feature 402..590 /gene="LOC116776693" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(417..425,432..434) /gene="LOC116776693" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 681..866 /gene="LOC116776693" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(696..704,711..713) /gene="LOC116776693" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1002..1193 /gene="LOC116776693" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(1020..1028,1035..1037) /gene="LOC116776693" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1236..1415 /gene="LOC116776693" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(1245..1253,1260..1262) /gene="LOC116776693" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1494..3647 /gene="LOC116776693" /note="P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B; Region: P-type_ATPase_Cu-like; cd02094" /db_xref="CDD:319783" misc_feature order(2481..2483,2487..2489,3579..3581) /gene="LOC116776693" /note="putative Cu binding site [ion binding]; other site" /db_xref="CDD:319783" misc_feature order(2613..2621,2817..2819,3030..3038,3126..3128, 3246..3254,3312..3314,3321..3323,3330..3332,3387..3389, 3396..3398) /gene="LOC116776693" /note="putative ATP binding site [chemical binding]; other site" /db_xref="CDD:319783" ORIGIN
tgcaatcgtatcttcggacgttctcgtgtcgccgatgattcacgaatgagaaacgtgagactgtcagtgctgtcgttaaccgaactcgtactaagcacacggatgtgtcctatatgtttgggactggaaatttaactgacatacacacaaatcacaggactgatggatagtataataaattaaatgatagcggatatcaattaaaatcaatgatagtgttatcaaattagagcatcgctgaactcgacggaatacagtgagaaataagagtgaattgagtgagtgaaataaattatgaagagttgagtgaaacagtgaagatgctgtcaagaggagttaagtacaagttactggaggatggcgacggaggtgatcccagtccagacctggtctccgtgcgtgtccccatccatggcatgacctgccagtcctgtgtgaggagcatcgagggatcagtccgggaactgccgggaattcactacgttaaggtggagctgtcagagaaggctggttatttcaagtatgaccccagcgcgtgctccgcggacagcatccgctctcatatagaagatatgggcttcgaggtcacggacaacagtgacggagagacgcggaacctcctcaacccagagatccccaccgacacgttgatagacatgagcacggacgccagcctgctgctcgctgtggtggggatgacctgccagtcctgtgtcgattccatacagggtgccctcaaagacgtcccaggtgttaccagctcaacagtcagcctggcccagggcacggcgctggtgaccttcaccccggccgaggtcactccggacctcattaaggacaccatctacaacctcggcttcgacgtggatatcatcagcgtcactgacaaagaagcagagaataaggaccagggcggctccggggacaggcgggcgcgcgcgggagggggggaggccaccgcgaagacgaacggtaacgcgccgtcagagatatccaggtgcaccctggaggtgaagggcatgacgtgcgcctcgtgtgtagcggccatagagaaacattgtgccaaattgacgggtgtgcattcgatagtgatagccctgctggcggccaaagccgaggtccgctacgagccggccaagatatccgcagcagccatcgccgactccatcaccgagctggggttcagctccgagctcatcagcgacagcggggcgccgaaggatttgaacctactaatcaagggcatgacctgtgcgtcgtgtgtcaacaagatagagaagtccctcatgaagctgaccggcgtggtgtcctgttccgtggcgctcaccaccagcaagggtaaagtcaagtatgaccccgaggtgatcggtgctcgccgcatctgtgatgctgtaggggacctcggcttcgaggccaacgtcgtgggatcgcagcacaaaggcaccgccaactatttggagcacaaagaagagatccgtcgttggcgtaacgcgttcctggtatccctgatattcggcgcgccgtgtatggcggccatgacttacttcatgctgggcatgggccatcactccgccagggacatgtgctgcgtgctgcctggactcagtctcgagaacctgctgctgtggctgctggcgacccccgtgcagtttatcggcggctggcacttctataaacaggcgtacaaagcgttgagacacgggacatcaaacatggatgtacttatatctatgaccactactataagttatttatattccgtgggcgcagtgagcgcggccatggcgctacagaaggacaccagcccgctcacgtttttcgacacgccgcccatgttactagtgttcgtgtcattaggcaggtggctagagcacatagctaagggtaagacttccgaggcgctatcaaagttgttatctctgaagcccacggaggctgttctcgtcaccctggaccctgaaggccgcgagatctcggagaagaacataccagtagacctggtggagaggggggacattctaaaggttgttccgggagcgaagatcccagtagacggaaaggtgatctccggccagagcacctgtgatgaatctctcataaccggggagtccatgccggtcgctaagaccaaagattccctggtgataggaggcagcatgaaccaacacggcgcgctgctagtgagggccactcacaccggcgaggccagcacactcgcacagatcgtgaggctggtggaggacgcgcagagcagcaaggcacccgtacagagactcgctgacactatcgcctcttacttcgtgccgatggtggtgttcctgtcgctgctgacgctggtctgctggaccatcagcggcgccctggacgtggacaggatcaaggctatcactccggagatctaccgcgacgcgggattctcggactgggagctgatagtgcaaacggccttccacttcgccctgtcggtgttggcgatagcctgtccctgtgcgctagggctcgccacgcccacggccgtcatggtggccacgggcgtgggcgcgcggctaggactgctcattaagggggcagagcctcttgagaacgctcacaaggtcaagacggtgatattcgacaagactggcaccgtcacgcgaggggacacgtccgtggcgagggtctccatactgacgggcgacccctccaccttaccggaagtcatcacgtgtatcctgacagcggaactgaacagcgaacatccggtcgcgtctgccatcgtgcggtggtgtacgagcgttgtgggctccccacgagcactcgtccgaggcttcacggcggctccggggtgcgggttgcgagcacgcgtgctcctgaccgagcgacccccgggactggacaaggatggagtcctgtcacatctggggggagtacccgtggagctggtgggaggggagggagacgccgcgctcagctccgcccaggccgctgccaggttacagagggtcatcaaggcggcggagcagggggaggaggtggagcaggtggtgcttatagggaacagagagtggatgcacaggaacggagtcatggtccctcgaagagtgcaggaacagctgcggacggacgaggagttagggaggacggctgtactggtcgccattaacgaccaactggtgtgcacgatcggcgtgtcggaccaggtgaagcccgaggcgcacctggccgtgtactgcctcaagaagatggggttggaggtgtgtctgctgacgggagacaacaagaagacggccgcggccatagcgagacaggtgggaatcaataaggtgttcgcggaagtgctgccctcacacaaggtggccaaggtccaggagttacaggacaaggggcagaaggtggctatggtgggtgacggtgtcaatgactccccggcgctggctcgagctgatgtcggtgtagccatcgccagcggtacggacgtggccgtggaagcagctgatttagtgcttatgaggagcgacctgctggacgtggtgtcgtgcctgcagctgtcgcgggtcacggtgcgccgcatcaggatgaacttcgtgttcgcttccgtctacaacctgctgggcatcccgctagccagcggagccttcgcgctctacggcctgcagctccagccgtggatggcgtccgctgctatggccatgagctcggtgtccgtggtgtgctccagcctcctgctgaagaccttcaggaagccgacgatggagcagctgaaaactccagagtatctccagtccttacaccaggaacagctggagcagctggaggcggtggcggttcaccgcggcctggacgagaagttggaccctcaggacaaaggcacgcctctggccaagttgttcacccgcagcaagtccaccgacgacttcctcctgcgcgaggaggacgacctgctgaccgtctccttcataccgaagaggtcgagctaggagcagctgtccacagctgacgtcacgttaccaatgttatgtacaaaatatatacctgatttatataaaaaatatattattatttggtatcgcaagtgaggctaacgtcgtggccgccgtctcaacccctacgggtatggtttctgttatctatgcccgtagcgagtg
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]