LOCUS       XM_032442368            6764 bp    mRNA    linear   VRT 18-FEB-2020
DEFINITION  PREDICTED: Coturnix japonica testis and ovary specific PAZ domain
            containing 1 (TOPAZ1), transcript variant X1, mRNA.
ACCESSION   XM_032442368
VERSION     XM_032442368.1
DBLINK      BioProject: PRJNA314147
KEYWORDS    RefSeq.
SOURCE      Coturnix japonica (Japanese quail)
  ORGANISM  Coturnix japonica
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Perdicinae; Coturnix.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_029517.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Coturnix japonica Annotation Release
                                           101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6764
                     /organism="Coturnix japonica"
                     /mol_type="mRNA"
                     /isolate="7356"
                     /db_xref="taxon:93934"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="blood"
                     /country="France: Tours, INRA PEAT"
     gene            1..6764
                     /gene="TOPAZ1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 10 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:107309313"
     CDS             853..6444
                     /gene="TOPAZ1"
                     /codon_start=1
                     /product="protein TOPAZ1 isoform X1"
                     /protein_id="XP_032298259.1"
                     /db_xref="GeneID:107309313"
                     /translation="

MPQLRSGKVVGTETRLTLWGAGVGCELGKQVVVELSPQLALEREPEQPSPSGLQSAAHSGGSSEQITFLLSVQKERAKSRQRLGGKKNKRVQSRVSSERKSDSALQVPDSAVCEGGQAPSIVAGTCLEETVGKETGRGQQSLCLGTDLQKKLSGETGSPEKPNLIGFQENTRHLGKKRKHSYVELKLQIPALEEDLEGTEGHSVVSCLSESEVLPPRKGMHSTEMKSAASLMILNLQIPGLKSLGPEESFLSEPKPQEVVDNPESVDGCSLEMLKKPKKKGGKRYLTKKGGQPLVKSELQGARRSAMLELYTQCAESKENTASLTQEDSLPLLCAQGLSGQEQSTAEGEQHKCCTVEHQLNSEIQKGADSVQESAKKKQNKNKQNSGTRAVKKRKANLMRSENPCEKESHFLESPAVDELTGTQSNIFPCHPETKGSGVQFKRRKHITDSIKCLQNCSLTTGEEVINAEHDDVENNRDGLNSCNGLLDVTRKNPFVRLETCSCISTFVKSSMNGATSAFNVSGFFHKAQDERNCVSPGGTVEWSDRDCNTDRMQTIINDSFVFNKEVKAQRKQGRFLCNQRKSSKFSSEKQCNTVRRSRKKMKITEMSAMQTVFPDVTNECSKCDLVAEAAVASSDSSATLGLNNKETALSNLSDGASHVCKESNTCVAQKSRRNRRKNSTKSLAFEDGCKKTSGLFIVAERKDANTVASRCHSATSGSLRALPHAHNVSNDHNSVMDEKLNKVRKKLQRFTCQRAIPMTGKHVWPIESCARTSGWVPESRGSVSGGKIILSPVFAESSDESGVKTIGNSGVTGSLGQLVLQTSLAEVNKEPAHKIMDLNADCLNSAEISESSSVGIYETCKTSSENVESPVNMVKSAVPFNPDDMQEDKATSNFTSAKDNEAVTKRNPSMAGQNRACKGKRNRVNVDHKASVVNQMLSDLKQTTVLNTRNLTNFKIPLRRNKPESGTLEPVSSPESKTRSPPELLDSSSVSGSQKRDDETSLIKVKQQPLPVVRDAISTASMKKKADEVHNKDFCDGSEGLSNEKSTLPDPVFLYPCPLERQIKSSSPDFSGSECVWKSEVSHHSGDAVDHRVALEIHDDSKSKVNLPQHKSEKFPDVLEAYNKDVLVIDVIQDDPDLFGTSGEEELTVTDSGNCPAKACSSSFSIKEEKQYLESAVTSENSHSVNSNFRDVNVQESGKSNEAENSWDLMLKASGIKIHNSSSGNSPMRSFAEESFEDGQLTEVDELLKSFEIEEKFKFADGVAAVEPREKSEAEKSDCKYRDLVSCELLSELPLHAPNRNKFSESTVQKPWKNDFRFSGKSPSLPLQNFRESETGKTDKNIKASHSVQQILEMINLPRRYCRFYFVTLRGCERSRCWFWHVPRREHEKLCMAIFKTYISINESGLLKRAVEIFVRYYREVAPGENFDFQVLNDLLVCLLKKCLLQEVFQMLNVTAQINTLPALEVLLKVFECVASRNIRDAVPTLISTFCKLIDAGMFLEYEHFNYIIKLLHQLKVSSQEIDSVLSIKSRFQEMHFKSNWLLDLNLVMAEIQHCKEKNDWAKLGALYVNARTACENSDDLQRLSLCVTEILTKDSEKDGPGIPFCDFADAVIKHAQYNEADKAFIGRAGISVMNAYRRVLQWIKGRKVLDKLQELQINFTVLKGLTGAEKLASRCQIVLCSPSAFRVLQWWIGRISKQDWQRCSMLAGAVCLQRGRLQGWQQGELLQLVVLVWMAEKSGKEPRCIVGSATLILFLGGATPSARSSMAKGSSIARKDRFLLSCTCRCFVFLLHFPGAFWPSAFSCSSDASCNFSAHLSFEASFPCGVWNHTIIELFRLEKALKNHQVPPQPDRTLHSLSSLR"

     misc_feature    5509..>5892
                     /gene="TOPAZ1"
                     /note="Putative aspartate racemase; Region:
                     Asp_Glu_race_2; pfam14669"
                     /db_xref="CDD:434113"
ORIGIN      

caagtacttccacatcacagcactgtgcttctggaaaggagagacacaaaaaacttcttggggttggactggatggtctccaggggtctttcccaacccctgtgactttgtattttctgtgcgcacatctcatgggaagctgagcataggagctactacattagaagcccccaaattaattttgtttgttttctggctatatagtctaactatttcatctactttgtcccacctcctctatctcctcaggaaacacctcatttgaaatacaaagcttatgttaactgccagtacacaaccaagtacatccccttgactcaagagagttgggatctgtttgcttttttttcactcaggtcagcccgactttgaacctttggtgactccacaacaggccctcggcacttcggcccgtacccatgcggccctgccccgccccatgtcccgcctgtcgaagcggcactgccgcctttccacacgcctgcagagccgccctcgcaccccctcggccgccatgatgcgacatggcgtggcagcagcccgcccttctccgtgagcttctcgtcgctgggacccagacgaggcgttgacagacggagcagtgaactgagaagtggcgaggggaaggggggggggggggggggggggcggctgaaccggtggtgttatctatctgtgaggcagtacggaggtgtgggggtgggagctggttggtggctgtgggctcgcaggctgtgcttctcgcgggccaggctgtgttgaggcaggagaaggttgtgctcccttcgtgttcgggcctgcacttctcagggtgctgctaggggtgtgcagggcttggtggtgtcccccaccatgcctcagttaagatctgggaaggtggtcgggactgagactcggcttactctctggggtgcaggggtgggatgtgagctggggaagcaggtggtggtcgagctgagtcctcagctggcactggagagggaacctgagcagccctcaccttcaggtttgcaatctgctgcacactcaggaggttcctctgagcagattacttttcttttgtctgtgcagaaggagcgagctaagagtaggcagaggctgggtggtaagaaaaacaagagggtacagagcagggtgtcttctgaaaggaagagtgattctgctctgcaggtaccagacagcgctgtgtgtgaaggtgggcaagcaccatccatagtggcaggaacatgtttggaagagactgtaggcaaagagacaggacgaggtcagcagtcattatgcttaggaactgacttgcagaagaaattgtcaggagagactggtagcccagaaaaaccaaacctcattggtttccaggagaatacaagacacttaggaaaaaaacgcaagcattcctatgtggaattgaaactgcaaatcccagccttggaggaggatcttgagggtacagaggggcacagtgttgtttcctgtttgtcagaatctgaggtgctgccacctagaaagggcatgcatagcactgaaatgaaaagtgctgcctccttaatgatactgaatctgcaaatcccaggtcttaagagtttggggcctgaggagtctttcttgtctgaaccaaaacctcaggaagtggtggataacccagagagtgtagatgggtgttccttagaaatgctgaaaaagccaaagaagaagggaggaaagagatacttgacaaagaagggcggacagccattggtgaaatcagaactacagggggcaagaaggtctgccatgctagagctgtatacacagtgtgcggagtccaaggaaaacactgcaagtctgacacaggaggactcattgccattactatgtgcgcagggcttaagtggccaagaacaatcaactgctgaaggagagcagcacaagtgttgcaccgtagaacatcagctgaactcagaaattcagaaaggagcagatagcgtgcaggaaagtgcaaagaaaaaacagaacaaaaataagcaaaactcaggtacacgagctgtgaagaagcgtaaggcaaatctaatgagatcagaaaatccctgtgaaaaggaatctcacttcttggaatctcctgcagttgatgaattaactgggacgcaaagcaacatttttccttgtcatcctgaaaccaaagggtctggtgtacagtttaaaagaagaaaacacattactgattctatcaagtgcctgcagaattgtagcctaactacaggtgaagaagtgataaatgcagaacacgatgatgttgagaataatagagatggcctgaacagctgtaacggcttgctcgatgtaacaaggaagaacccatttgtgagattggagacctgtagttgcatcagtacatttgtaaaatcttcaatgaatggagctaccagcgcctttaatgtaagtggattcttccacaaagcccaggatgagaggaattgtgttagtcctggtggtactgtagaatggagtgatagggactgcaacaccgatagaatgcaaactatcataaatgatagtttcgtgtttaataaggaagtaaaagctcagcgtaaacaagggcgttttttatgcaaccagagaaaaagcagtaagttctcaagtgaaaaacagtgtaatactgttagaaggagtaggaaaaagatgaaaatcactgagatgtcagccatgcagactgttttccctgatgttactaatgaatgcagtaagtgtgacttagtagcagaagcagctgttgcctcttcagactcctccgcaaccttaggactaaataataaagaaacagctctgtcaaatttgtctgatggtgcatctcatgtatgtaaagaaagcaatacttgtgtagcacaaaagagtagaaggaataggagaaagaatagtactaaatcgcttgcatttgaagatggctgtaagaagacatctggtctgtttatagtagcagaaagaaaagacgcaaacactgtggcatcacggtgccattctgctacctcaggtagcctgagagcgctacctcatgctcataatgtttctaatgatcacaacagtgtgatggatgaaaaattaaataaagttagaaagaaactgcagcggtttacctgtcaaagagcaatacctatgactggcaagcatgtttggcctattgaatcttgtgccaggacttctggatgggtccctgaaagtcgtgggtctgtctcaggaggaaaaataattttaagtccagtttttgcagagtcctctgatgaaagcggtgtcaaaactattggaaacagtggtgtgacagggagtttgggacagctggttttgcaaacatcgttggcagaagttaacaaagaacctgcacataaaataatggatctaaacgctgactgtctgaattcagctgaaatctcagaatcttcttctgtgggtatttatgagacttgtaaaacgagcagtgaaaatgtggaatcaccagttaatatggttaaaagtgctgtaccttttaaccctgatgatatgcaagaagataaagcaacctcaaattttacaagtgcaaaagataatgaagctgtaacaaagagaaacccgtctatggcaggccagaatagagcatgtaaagggaaaagaaacagagtaaacgtagaccataaagcatccgttgtgaaccaaatgctttctgatttaaaacaaacaacagtactcaacaccagaaacctgacaaatttcaaaatacctttacgcagaaacaaacctgaatccgggacattggaacctgtcagttcacctgagagtaaaacccgtagcccaccagaactacttgatagctctagtgtttcaggaagtcagaaaagagatgacgagactagcttgataaaggttaagcagcagcctcttcctgtagtaagggatgccatatctacagcttccatgaagaaaaaagctgatgaggttcacaataaggacttttgcgatggctctgaagggctttcaaatgagaagtccacactccccgatcctgtctttttatatccgtgtcctcttgagagacagataaagtcatcttcacctgacttcagtggtagtgaatgcgtatggaaatcagaggtttcccatcattcaggggatgcagttgaccaccgtgttgcattagaaatacatgatgatagcaaatcaaaagtcaatcttccacaacacaaaagtgaaaagtttccagatgttcttgaagcttacaacaaagatgttcttgtcattgatgtgatccaggatgaccctgatctttttggaaccagtggcgaagaggagcttacagtcacagacagtggaaattgtcctgcaaaggcatgcagttccagcttctccattaaagaagaaaagcaatatctggagtctgctgttacttcagaaaacagtcattcagtaaacagtaattttagagacgttaatgtacaagaatctggaaagtcgaatgaggctgaaaattcatgggatttgatgctgaaagcttcaggtattaaaatccacaattcctccagtggaaacagtcccatgcgaagttttgcagaggagtcttttgaagatggacaactaacagaagtagatgagcttctaaagagttttgaaatagaagaaaagttcaaatttgcagatggagtggctgctgtggaaccaagagaaaaaagtgaagctgaaaaaagtgactgtaaatacagagatctcgtgagctgtgaactgctctcagaattgccactgcatgctccgaacagaaacaaattcagtgaaagtacggtgcagaaaccctggaagaatgattttagattctcaggaaaaagtccttcactgcccctccaaaatttcagagagtctgagacaggaaagacagacaaaaatataaaagcttcccattcagtccagcagatcctggagatgataaacttgccccgtagatactgcaggttttattttgtgactctgcgtggctgtgaaaggtcaagatgttggttttggcacgttcctagacgagagcatgaaaagctctgcatggcaatatttaagacatatattagtatcaatgaatcgggccttctgaaacgtgcagtcgaaatatttgtcaggtattacagagaagttgcacctggtgagaattttgattttcaagtgctgaatgatcttctcgtttgtttgctcaagaaatgtttgttgcaagaagtattccagatgttgaatgttactgcacagattaatacactaccagctttagaagttcttctgaaagtttttgaatgtgtggcttcccggaatataagagatgctgtgcctacattgatcagtaccttttgtaagcttattgatgctggtatgtttcttgagtatgaacattttaactacataattaaactccttcaccaattgaaagtttcaagccaggaaattgattctgtcttgagcataaaatccagatttcaggagatgcattttaaaagcaactggcttttggacttgaacttggtaatggcagaaattcagcattgcaaggaaaagaacgattgggccaagttgggagcattgtacgttaatgcaagaactgcatgtgaaaattctgacgatcttcagagattgtctttatgtgtcactgaaatactaacaaaagattctgagaaagatggaccaggaattcctttttgtgattttgctgatgcagtgataaaacacgcccagtataatgaagcagacaaagctttcatcggaagggctgggataagcgtaatgaatgcctatcgcagagtactgcagtggataaagggaaggaaagttctggataaactgcaagagctgcagataaattttacagtcctgaaaggactgactggggcagagaagttggcatcgagatgtcaaattgtgttgtgcagcccgtctgcttttagagtccttcagtggtggataggcaggataagcaagcaggactggcagaggtgcagcatgctggcgggggctgtctgcctgcagcgtggcaggctacagggttggcagcaaggggagctgctgcagctggttgtgctggtttggatggcagagaagtcagggaaggagccccggtgcattgtgggctctgctactttgattctttttcttggtggggcgaccccatctgccagatcttcaatggcaaaggggtcgtccattgccaggaaggatcgttttctgctttcctgcacttgcagatgttttgtttttctcttgcacttccctggtgctttctggccctcagccttctcttgcagcagcgatgcgagttgtaatttctccgcacatctctcttttgaggcctcttttccctgtggagtctggaatcatacaatcatagaattgttcaggttggaaaaggccttaaaaaatcatcaagtcccaccacaacctgaccgtacactccactctctatcatccctccgctgaatcacgtccctgtgtaccacatcaaaaagctttttaggcatgtccagggatggtgactcaaccagcaccctggggagcctattgcagtgcataaacccccctttgtataaagctgtttttcttggtgttcaatgtcaacctcccctggctcatcttgaggccatttcccctggtcctgtcacctgttatcattgagaatagaccagccccactctcactgctgtcaccttccaggtatgtgaagagagcaataagggctcccctcagcctcatcttccccaggctaaacagcctcatttcctctagtcgctcctcacagg

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