2024-04-19 10:08:38, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_032314178 7164 bp mRNA linear MAM 03-FEB-2020 DEFINITION PREDICTED: Mustela erminea ATPase copper transporting beta (ATP7B), transcript variant X3, mRNA. ACCESSION XM_032314178 VERSION XM_032314178.1 DBLINK BioProject: PRJNA602914 KEYWORDS RefSeq. SOURCE Mustela erminea (ermine) ORGANISM Mustela erminea Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Mustela. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_045628.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mustela erminea Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7164 /organism="Mustela erminea" /mol_type="mRNA" /isolate="mMusErm1" /db_xref="taxon:36723" /chromosome="15" /sex="male" /tissue_type="spleen (genome), liver, muscle, kidney" /dev_stage="adult" /country="New Zealand: Coromandel" /lat_lon="37.304717 S 175.755071 E" /collected_by="Andrew Veale, Tim Cruickshank" gene 1..7164 /gene="ATP7B" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns" /db_xref="GeneID:116573862" CDS 321..4790 /gene="ATP7B" /codon_start=1 /product="copper-transporting ATPase 2 isoform X3" /protein_id="XP_032170069.1" /db_xref="GeneID:116573862" /translation="
MVGKGVTVDTAMEEAGGETPRSPEPSFLATLGDPQVTLVSVHKRWSFRRNPGARGSSRPVTSEEEGECSQKVLNGTRGIRSNQILSKLSLPARAREPAMKQSFAFDNVGYEGGLDTVDPPQTATGTISISGMTCQSCVKSIEGRISSLKGIVSIKVSLEQGSATVRYVPSILSLPQICRHIEDMGFEASVAEGKAASWPSRSSPGLEAVVKLRVEGMTCQSCVSSIEGKLGKLQGVVRVRVSLSTQEAVITYQPYLIQPQDLRDHVSDMGFEAVIKNKVAPVSLGPIDIGRLQSTNPKTPLASDNQSLNNSETSEHQGSHTVTLQLRVDGMHCTSCVMNIEENIGQLPGVQSVQVSLESRLAQVQYDPSRVTATALQRAIEALPPGNFKVSLPDGVTGNGTGRRSSNRVVPAPTLRPQVQGVCDTVVLAIAGMTCASCAQSIEGLISQREGVQRISVSVADGTGVVLYDPSVTNPEELRAAVEEMGFEASVISENYSTNHVGNHSAGTSPAPPEAGVPVFVQEVAPRAGEPPKNHNSGSSSEPPQASTTVAPQKCFLQIGGMTCASCVSHIEKSLQKEAGILSVLVALMAGKAEVKYNPEVIQPLEIAQLIQDMGFEATVMEDYTGSDGDLELIITGMTCASCVHNIESRLTRTNGITYASVALATSKAHVKFDPEIIGPRDIVRIIEEIGFHASPAQRNSGAHHLDHKVEIKQWRKSFLCSLVFGIPVMGLMIYMLVPSHEPHEAMVLDRNIIPGLSILNLIFFILCTFVQLLGGWYFYVQAYRSLKHGTANMDVLIVLATTIAYTYSFVILVVAVAEKAERSPVTFFDTPPMLFVFIALGRWLEHVAKSKTSEALARLMSLQATEAIVVTLGEDNLIVREEQVPMELVQRGDVIKVVPGGKFPVDGKILEGNTMVDESLITGEAMPVTKKPGSIVIAGSINAHGSVLVNATHVGNDTTLAQIVKLVEEAQMSKAPIQQLADRFSGYFVPFIIIISTLTLVVWIIIGFIDFGVVQKYFPTHSKHISQAEVIIRFAFQTSITVLCIACPCSLGLATPTAVMVGTGVAAQNGILIKGGKPLEMAHKIKTVMFDKTGTITHGVPKVMRVLLLVDVAMMPLRKVLAVVGTAEASSEHPLGVAITKYCKEELGTDSLGYCTDFQAVPGCGIGCKVSSVEGLLAHSESQQSKQAAPPSRAGSAPEEIDVTPQTFSVLIGNREWMRRNGLTISSDVSDAMANHELKGQTAVLVAVDGVLCAMIAIADAVKQEAALAVHTLKSMGVDVVLITGDNRKTARAIATQVGINKVFAEVLPSHKVAKVQELQNEGKKVAMVGDGINDSPALAQADVGIAIGTGTDVAIEAADVVLIRNDLLDVVASIHLSKRTVWRIHLNLVLALIYNLIGIPIAAGVFMPIGIVLQPWMGSAAMAASSVSVVLSSLQLKCYKKPDLERYEAQAQGRMKPLTASQVSVYIGMDDRRRDSPRATPWDQMTL"
misc_feature 696..887 /gene="ATP7B" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(714..722,729..731) /gene="ATP7B" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 951..1139 /gene="ATP7B" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(969..977,984..986) /gene="ATP7B" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1293..1469 /gene="ATP7B" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(1311..1319,1326..1328) /gene="ATP7B" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1599..1790 /gene="ATP7B" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(1617..1625,1632..1634) /gene="ATP7B" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1989..2177 /gene="ATP7B" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(2004..2012,2019..2021) /gene="ATP7B" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 2214..2405 /gene="ATP7B" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(2232..2240,2247..2249) /gene="ATP7B" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 2469..4577 /gene="ATP7B" /note="P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B; Region: P-type_ATPase_Cu-like; cd02094" /db_xref="CDD:319783" misc_feature order(3462..3464,3468..3470,4506..4508) /gene="ATP7B" /note="putative Cu binding site [ion binding]; other site" /db_xref="CDD:319783" misc_feature order(3594..3602,3804..3806,3957..3965,4053..4055, 4173..4181,4239..4241,4248..4250,4257..4259,4314..4316, 4323..4325) /gene="ATP7B" /note="putative ATP binding site [chemical binding]; other site" /db_xref="CDD:319783" ORIGIN
ctgggtgagggcacgcgcggggccgtgtgcaaagattcccagtgccgaatgcagtgtgatgagtgagagggtgccaattggttggaaggatgtaggtaaacaagagcaaatatatatccagcagcgtgcagcctgcccgagttctgaagccggctgctggacttggctggcagcctctcaccgaactggctccagagcagaggggactctgcaggactgagcacagcaggtggcctgcccctgctacttagggggacacttttaaagcatttgctcctcccatgaccaggtagtgtggtgagggtgaactgcttgctcgaatggtgggtaaaggtgtgactgtggacactgcgatggaggaagctgggggtgagacgcccaggagccctgagccatccttcctggcgaccctgggtgacccacaggtgaccctggtgtccgtccacaagcggtggtccttcaggaggaaccctggggccaggggctccagcaggccagtgacttcggaggaggaaggagagtgttcacagaaggttttgaatggaacacggggaatccgttccaatcagatcttgtctaaactttccttgcccgctcgtgcccgggagccagcgatgaagcagagttttgcctttgacaatgtcggctacgaaggcggcctggacactgtggacccccctcagacggccaccggcaccatcagcatttcgggcatgacttgccagtcatgtgtaaagtctatcgagggcaggatttccagcctgaaaggcatcgtgagcattaaggtttccctggaacagggcagtgcgacggtgaggtatgtgccgtccatcctgagcctgccgcagatttgccgtcacattgaggacatgggctttgaggccagcgttgcagagggaaaggctgcctcctggccttcgaggtcctcgcctggcctcgaggctgtggtcaagcttcgggtggaaggcatgacctgccagtcctgcgtcagctccatcgaaggcaagctcgggaaactgcagggagtagtgagagtccgagtgtccctcagcacccaggaggcagttattacataccagccttacctgattcagccccaggacctcagggaccacgtcagtgacatgggctttgaagctgtcatcaagaacaaagtggcgcccgtaagcctgggacccatcgatatcgggcgcttacagagcaccaatccaaagacccctttggcatctgataaccagtctctcaataactctgagacctcagagcaccaagggagccacacggtcaccctgcaactgagagtagatggaatgcactgtacgtcttgtgtcatgaatattgaagaaaacataggccagctgcccggggttcaaagtgttcaagtgtccttggagagcagactggcccaagtacagtatgacccttctcgcgtcaccgccaccgccctgcagagggccatcgaagcgcttccacctgggaacttcaaagtctctcttcctgatggtgtgacaggaaatgggacaggtcgcaggtcttccaaccgtgttgtccctgcccccacgctgagaccccaggtgcagggggtgtgcgatactgtggtgctcgccattgctggcatgacctgtgcgtcctgtgcccagtccatcgaaggcctcatctcccaaagggaaggggtacagcggatatcggtctctgtggctgacgggactggcgtggttctctatgatccgtctgttactaacccggaagaactccgagctgctgttgaagaaatgggatttgaggcttcagtcatttctgaaaactattccaccaaccatgttggaaaccacagtgcggggacttccccagcgccccccgaagctggcgttcctgtgtttgtacaggaagtggctccccgtgccggggagccccctaaaaaccacaactccggctcctcgtccgagcccccacaggcctctaccacggtggctccccagaagtgctttctacagattggaggcatgacctgtgcatcctgtgtgtcccacatagagaagagcctgcagaaggaagcaggtattctgtcagtgctggttgccctcatggctgggaaggcagaggtcaagtataacccagaagtcatccagcccctggagatagctcagctcatccaggacatgggctttgaggcgacagtaatggaagactacacaggctccgatggcgacctcgaactcatcatcacggggatgacctgtgcgtcctgtgttcacaacattgagtccagactcacaaggacaaacggcatcacttacgcctctgtggcccttgccaccagcaaagcccacgtgaaatttgatcctgaaattatcggtccacgggatattgtccgaattatcgaggaaatcggctttcatgcttccccggcccagagaaactccggcgcgcatcacttggaccacaaggtggaaataaagcagtggaggaagtctttcctgtgcagcctggtgttcggcatccccgtcatgggtctcatgatctacatgctggtgcccagccatgagccccacgaggccatggtcctggaccgcaacatcattccgggactgtccatcctcaatctcatcttctttatcttgtgtacctttgtccagctcctcggtgggtggtacttctacgtccaggcctacaggtctctgaagcatgggacagccaacatggacgtgctcatcgtgctggctaccaccatcgcctacacctactcatttgtcatcctagtggtggccgtagccgagaaggcggagaggagccccgtgaccttcttcgacaccccccccatgctctttgtgttcattgccctggggcggtggctggaacacgtggcaaagagcaaaacctcagaagcccttgccagactcatgtctctccaagccacagaagccatcgttgtcacccttggtgaggacaacttgattgtcagggaggagcaggtgcccatggagctggtgcagcggggcgacgtcatcaaggttgtccccggggggaagttcccagtggatgggaaaatcttggaaggcaacaccatggtggacgagtccctcatcacaggagaagccatgcctgtcacgaagaaacctggaagcatagtgattgctgggtctataaatgcacatggctctgtactcgttaatgccactcacgtgggcaatgacaccacattggctcagatcgtgaaattggtagaagaggctcagatgtcaaaggcacccattcagcaactggctgaccggtttagtgggtattttgtcccatttatcatcatcatttcaacgctgacgttggtggtatggattataatcggttttatcgattttggtgttgttcagaaatactttcctacccacagcaagcacatctcccaggcagaggtgatcatccggtttgcgttccagacgtccatcaccgtgctgtgcatcgcctgcccctgctccctgggcctggccacgcccacagcggtcatggtgggcaccggggtggccgcccagaatggcatcctcatcaaaggaggcaagcctctggagatggcccacaagataaagaccgtgatgtttgacaaaactggcaccatcacccatggggtccccaaagtcatgagggtcctcctgctcgtggatgtggccatgatgcccctcaggaaggttcttgctgtggtggggactgcagaggccagcagcgagcaccccttgggcgtggcaatcaccaagtactgtaaagaggaattgggaaccgactccttgggatactgcacggacttccaagcagtgcccggctgtggaatcggctgcaaagtcagtagtgtggagggcctcctggcccacagcgagagccagcagagcaaacaggcggctcccccgagcagggctggcagcgctcccgaggaaatagacgtgaccccccagaccttctctgtgctcatcgggaaccgcgaatggatgaggcgcaacggcctaaccatttccagcgacgtcagtgacgcgatggcgaatcatgagctgaaaggccagacggccgtgctggtggccgttgacggcgtgctctgtgccatgatcgccatcgccgacgcagtcaagcaggaggcagccctggccgtgcacacgctgaagagtatgggtgtggacgtggttctgatcacaggggacaaccggaagacggccagagccatcgccacccaggttggtatcaacaaagtctttgcagaggtgctaccttctcacaaggtggccaaggtccaggagctccagaatgaagggaagaaagttgccatggtaggagacgggattaatgactcgccggccttggcccaggctgatgtgggcattgccatcgggacaggcacggatgtcgccatcgaggctgctgacgttgtcctcattagaaacgatttgctcgatgtggtggctagcattcacctctccaagaggaccgtctggagaatacacctcaacctggtgctggcgttgatttataacctgatcggaatacccatcgcggcaggggtcttcatgcccatcggcatcgtgctgcagccgtggatgggctcggcggccatggcggcctcctctgtgtctgtggttctctcgtcgctgcagctcaagtgctataagaagcctgacctggagcggtatgaggcccaggcccagggccgcatgaagcccctgacagcgtcgcaggtgagcgtgtacatcggcatggatgaccggcggcgggactccccgagggccacaccctgggaccagatgaccctgtaggagctggtgggaatgaaaccactctgcttcctgcactttcgcacacagcatgggcaagagcatagacaccactgtgtgggtttattccagagggagacgtctacttgtctgctgttttcctttgtgtgaagacaatgacaacggttgaaattacaggatagactatgagaagttaaataatgccacgaaatccctgagtcttctttattctattcgaaaagatgaataaacagatgtgaaatcatccgtgggctaagatgaaaacaagaattgagggaaatttaacattttttttgtctgaaaaagaaatggccatcatttcttcttatttaatgtaaacgtaacgactgcttatggcaaaaatttgaacacagggaaatatagaagggggggcacccaaaggataccccatgaacatgattttgtggaaagtgtcctgtgtgggtgaatcacactaagacctcgagggggcaaagcctgtctgcacccaggggcccagctcccagatctcccggtgctgtagtgagcagcggatagaactgtggggaacccacagatgcccaggtcccagtgaggtcaggaaacagtgttcaaagaccaagaggactggccgcaggctctgtgctggtgccccactggttctgtctcctgctcaccctgtcctcgcaatgatcttgagaacgataggcatcagcctcgtttccttagatggagggtccatgcttaggggagtccagctgtctgtgcaggagacaaagctgggaagggtgttcaagcccatttggctcttgtcctgccaggctcacctacctccctgcaaaggtgatgcccagtgctctcaggataagctgggtctctgtgccctgccctccccgctccccatagcatgccttgggtaagagaagtgtcctttcacgggacagtgtgttttatcgcaagagccaccaggtgtctctctgaccaaaacaacctcctaatctgctgcacgatcccaaattctcttaatctttttttttttttttcttgacgcacctggaaattcaaataaagctcatcgtaatgtgaataggagatgggacagaaggtgaggctggagtccagctctggcatggggcacctccaagctatggtgtgtgtgttcatgtctgtgctgttagcccgcatttagccctgcagagtatgtcactgggatgactcggcagtgaacttctctgccgtcacgtgtgtctgtctgggcttcgtgctttctaagttaagatattttttttttttaagcttgaacatttaaaaaagggggggatggttttaaaggctcgtggtgattgtcagtgtccccaaagctctaagttctgagactcctgtgttggccgtgggtttagagacctccaccccaagtccctggggagaagtgtgtccccccccccgtaatgtacatatggcccccttggggttacttgatcctgagcagggcttacctgctacagacctctatctcctcttctattcggtgaggagcactgcctatttcctgtcccaagtgcaaggtggcccatggtcaccggtaacctccttaggcaatgcaggtgtgctgtctcctgtagatcttcctgagaaagaacaaagggtgacctggggccctccgcttcctcgtctgcacaaaatggtgtaataatagtttccctgtcccaggatagtggtgaggagaggaaagcacgcgctgaacacacaacaaatgttagctgctgccattgacgccatgcgtgacagtggatgtgttctagatgaacagctcaccacctttgcacacaagcactcgaaacccacccttgtgggttccctcgccagccccaagaaagcacggtcttaatgggtctgcttctcagacctcctgggctgtgtggcttgctctaaaagaagcaggctttgtccagtagctgcgcagcaggccggattcccctcctcgcttcccggtggttctagagcatcaggctctagacgtggagcctgtgttccaagaacgtggcagcgggaggccacgccctggaggacagagtaagagtacccactgccgacccgagttcaaaacccgattccacaccgtgagaaggtcaccctgccttctgagcttccaatcagtgtagaagagaggagttcctccttccccggcgtgtgtagcctacatgcaacggacggtttgaaagatacacagtgagaattagaaaagtgatgaagtaaagggtgctagtgagccggagcgacaaaaaaggaaagtggcttctttttaccgcatcctgccagcctggtttagaacccatgtgtgtactgttcaggacttgagcgttttcaccaatctcttttgatgcctttcctttct
//
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@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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