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2024-03-28 19:10:55, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_032308531            4802 bp    mRNA    linear   MAM 03-FEB-2020
DEFINITION  PREDICTED: Mustela erminea testis and ovary specific PAZ domain
            containing 1 (TOPAZ1), transcript variant X1, mRNA.
ACCESSION   XM_032308531
VERSION     XM_032308531.1
DBLINK      BioProject: PRJNA602914
KEYWORDS    RefSeq.
SOURCE      Mustela erminea (ermine)
  ORGANISM  Mustela erminea
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia;
            Musteloidea; Mustelidae; Mustelinae; Mustela.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045614.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Mustela erminea Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4802
                     /organism="Mustela erminea"
                     /mol_type="mRNA"
                     /isolate="mMusErm1"
                     /db_xref="taxon:36723"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="spleen (genome), liver, muscle, kidney"
                     /dev_stage="adult"
                     /country="New Zealand: Coromandel"
                     /lat_lon="37.304717 S 175.755071 E"
                     /collected_by="Andrew Veale, Tim Cruickshank"
     gene            1..4802
                     /gene="TOPAZ1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116570889"
     CDS             144..4568
                     /gene="TOPAZ1"
                     /codon_start=1
                     /product="protein TOPAZ1 isoform X1"
                     /protein_id="XP_032164422.1"
                     /db_xref="GeneID:116570889"
                     /translation="
MRRLLPSGPTAAHGREGDARGSRKRGRRPGPGEAGGCGPEVWEREESRQKRRMVARASGREEVESDKSAKEKRKITEASSDDPQPGTDLNENNKYSIEESNVGRKPRKRMKVSEKGDEMIIEMNFSNMYSKSELALQENQTGAEDKGAETLEAKKSPLKVLRKINHNTLSPVGHLLSLPETAGKKTSPGHHVNAMFQKTLEPLLEEEIKNDSEHLGLKSMEPEEYIKLVQSSIVKLPSDCSNFEKRSSWEDLRNEAEELKLGCHRTIPMTGKRTWPCYSCARISAQCWKKSSLPDSNNCLPGSRESFKQDDFLKHQTNQTHLTDSKLSLQSTITETNSESSSKEKLDSNLNCLSLVSTIEPTLMIIKEPIIDDKKIQSEEPSRSGSEVVSNTTEDTQLTNVPQNLTGSKKKDRGNLTKFNLTVASQDVQEANNSIGKTIHRKACIAKQTFVVPDLVKILNTGRLTNFKIPLLKNKTEKKKEINARSSEREAYSPLELLDNLSGAEVRQNRNKENISTVTSGPQSLRIQNSVTPVQANSDSCSCKHSCSISSSFLKQGNDNKPSNHISEPGNIISNKEAVSLTVERNTFSCDLGCIEKSPAFCSNEQETFKPVFSEVSGREMTKNFSEIKMGFPDILKAYEDDVLLIDVIQDDPDLFGVSSEAELSFTSEFPMINQEPNVAEEHQSTDSKHMELPEKKEPSDDLRKLPILDPGLMKSEICASLSAANEIKHDSEGGNITLGKVTNETCESEKLRDFIEHVKRSDLDEKCRFSEKVIIKEEKENIFEVCKSEDSKNAELVVGESQLAVLAPKPLCLSVPPLNISGHQEDILLKPWMNDFRFPGKYSLLKLQNPETCEIFKREKNLGVFQKPLGLMLPHRYCKFHFNTLRGCERSQCKFAHVPEQGDEKVCMDVFKKYISINELCLLQRAVNTFMDYYRKFPPGIHFDLQVLNDLLNSLLKHCLLKEVFQVVNLSIMVKMLPSLKILLKIFEHVATMKLRNAVPALIDIFCKFVEAGMVFDAEHFNYIVKLLYQLQASQQEITAVLEMKSRLQMRQFKKNWKCDLDSALNEIEHCKEKGDWIKLGNLYINIKMGCENFADFQRFCAYIAETLTKDCKEERPGVPFCEFAETVSKDPQNSEVDKTLLGRIGISAMYYYHKLLQWSKGRKVLDKLYELKIHFTSLKGLTGPEKLAPRCQIVNIAAEIFLKSGSLDGAIWVLRESEWIINTPLWPCDRLDVLNRHNLLCTIAHEILAKSLYRQTFEVLQNLPGFQNSQETVEVSQYSLLFNKLLDACIESNSLGMSSSVAEFMISKNIPIDFSFLRRLITSLGRSCLWLKARAHYKSALSLGCYPPLEGNLYRKLLLIPSYLSEIEMLLAIEIFLVSNASSIQSPGTSTQILQIVLKRCEENKSRSKDDYQAAVERLIMAARISDPKLFIKHMTVNVNKEQVYSLEHCSALKWLKENMKWAGKVWLFSNH"
     misc_feature    3348..3875
                     /gene="TOPAZ1"
                     /note="Putative aspartate racemase; Region:
                     Asp_Glu_race_2; pfam14669"
                     /db_xref="CDD:434113"
ORIGIN      
gcaggcggcgcggagctgggccaaggctggggtcttggcagcggaagcagcttttgcgtggcgggtggccgcctgtgagcgggtgcggccggcctcggagggcatcagcgggcatcgcgggcagggcgggccgcccggggctgatgcggcggctgctgccctcgggccccacggcggcccacgggcgtgaaggcgacgcgcgaggctcgaggaagcgaggccggcggccagggccaggcgaagcgggaggctgcggccctgaggtctgggaacgcgaggagagcaggcaaaagaggagaatggtggcccgggcgtctgggagagaagaggtggaaagtgacaagtcggccaaggaaaaaagaaaaattactgaagcctcaagtgatgatccacagccagggactgacctgaatgaaaacaataaatactcaatagaggagagcaatgttgggagaaaacccaggaaaaggatgaaggtgtctgaaaaaggagatgaaatgattattgagatgaacttctctaatatgtatagcaagtctgagttggcattacaagaaaaccaaacaggtgctgaggataaaggagcagagactttagaggctaaaaaaagtcctttaaaagttttgagaaaaataaaccacaatacactctcgccagtgggtcatttattaagtcttccagaaacagcagggaaaaaaacaagtcctggacatcatgtaaatgctatgtttcagaaaacccttgagccacttttggaagaagaaataaaaaatgattcagagcacttaggattaaaaagcatggagccagaagagtatattaagttggtgcaaagctcgatagtgaaattacctagtgattgcagtaattttgaaaagagatcatcatgggaagacttgagaaatgaagctgaagaattgaagttaggctgtcacagaacaataccgatgactggtaaaagaacttggccttgttattcctgtgctagaatatctgcccagtgttggaaaaagtcttccttgccagattcaaataactgtcttcctgggtctcgggaaagttttaagcaagatgattttcttaaacaccaaacaaatcaaactcacttaactgattctaaattatcattacaaagtaccataacagaaacaaacagtgaatcttcaagtaaagaaaaattggattctaatttaaattgtttgtctttagtctccacaatagaacctactttaatgattataaaggaacccataattgacgataaaaagatacagtcagaggaaccaagcagaagtggttcggaggtagtttctaatactactgaagatactcagctaactaatgtgcctcaaaacttaacaggaagtaaaaaaaaagatagagggaatttaacaaaatttaatttgacagtggcttcccaggatgtccaggaagcaaataactctataggcaaaactattcatcgaaaagcatgcattgctaagcaaacctttgtggttccagacttagtgaaaatactgaacacaggccggctgactaattttaaaattccattacttaagaataaaacagaaaaaaagaaagaaataaatgcaaggtcatcagagagagaagcatatagtcccttagaacttcttgacaatttatctggagctgaggtaagacaaaataggaataaagaaaatatttctacagtaacttcaggacctcagtctttgagaatacaaaatagtgtaactccagtgcaagctaattctgactcatgcagctgcaagcattcctgtagtatttcttcaagttttttaaagcaaggtaatgataataaaccatccaaccacatctctgaaccaggcaatattatttcaaacaaggaagctgtttctctcacagttgaaagaaatactttttcttgtgatcttgggtgtatagagaaaagtcctgctttctgctctaatgaacaagaaacattcaaaccagttttctctgaagttagtggtagagaaatgactaagaacttttcagaaattaaaatggggtttccagatattcttaaagcatatgaagatgatgtcctcttaattgatgtcattcaagatgacccagacctctttggggtctccagtgaagcggagctctcatttacttcagagttccctatgataaaccaggaacccaatgttgctgaagagcaccagtcaacagactctaagcacatggaacttccagaaaaaaaagaaccaagcgatgacttgagaaaacttcccatactggatcctggattgatgaagtcagagatctgtgcttccttatcagcagcaaatgaaattaaacatgattctgaaggtggaaatattaccttagggaaagttactaatgagacctgtgaaagtgaaaagctgagagacttcattgaacatgtaaaacgttcagacttggatgaaaagtgtagattttcagaaaaggtgattattaaagaagaaaaagaaaatatttttgaagtttgcaaaagtgaagattctaaaaatgcagagcttgtggttggtgaaagtcagctagcagtactggccccaaaacctctatgcttatcagtgccacctttgaatataagtggtcatcaagaagacatattactgaagccctggatgaatgatttcagatttccaggaaaatattctctcctaaaactgcaaaatcctgaaacttgtgaaatatttaagagggaaaaaaatttaggggtgttccagaagcccttagggttgatgctaccacatagatactgcaaatttcattttaatacgttacgtggctgtgaacgatcacaatgcaagtttgctcatgtgcctgagcaaggggatgagaaggtctgtatggatgtgtttaagaaatatataagtatcaacgaactgtgtttgctacaacgtgcagtaaacacatttatggattactaccgaaaatttccaccgggtatacactttgatttacaagtgctaaatgaccttctaaattctttactcaaacattgtttattgaaagaagtatttcaggtagtgaacctcagcataatggttaaaatgctgccttctctgaaaatattactaaaaatatttgaacacgtggcaactatgaaattaaggaatgctgtacctgctttaattgatatattttgcaagtttgttgaagctgggatggtatttgatgcagaacactttaactatattgtcaagctcttataccaactacaggcttcccaacaagaaataactgcagttctggaaatgaaatccaggttgcagatgaggcaatttaaaaagaactggaaatgtgatttagattcagccttgaatgaaatagagcattgtaaagaaaaaggtgactggatcaaactgggaaatttatacattaacataaaaatgggctgtgaaaactttgcagatttccagagattttgtgcttatattgctgaaacattaacaaaagactgtaaagaagagagaccaggtgttccattttgtgaatttgctgaaacagttagcaaagatccgcaaaatagtgaagtagataaaactttgttgggaagaattggaatcagtgctatgtactactatcacaagctgttgcagtggtccaagggaaggaaagtcttagataaattatatgaattaaaaatacatttcacaagtttaaaaggacttacagggcctgagaagctagcaccaagatgtcaaattgtgaatattgcagcagaaatttttctaaaaagtggaagcctagatggtgccatttgggtattgagggagtcagaatggatcatcaataccccactgtggccttgtgatagactggatgtactcaatcgacataatctgctctgtacaattgcacatgaaatcttagccaagagcctttatagacagacatttgaagttttgcaaaatctaccaggttttcaaaattctcaagaaactgtggaggtctcacagtatagccttctctttaataaacttctggatgcctgtatagaaagcaacagtcttggtatgtcatcctctgtagcagaattcatgatttcaaagaacatccctattgatttctcctttcttagaagattaattacttctttaggaaggagttgtttatggctcaaagccagagcccactacaaaagtgctctttcattgggttgctacccaccattggagggaaatttatacagaaaacttctactgattccttcctatttatctgagattgaaatgcttttagctattgaaatcttcctggtatctaatgctagtagtattcagagtcctggaacttctacacagatactgcagatagttttgaaaagatgtgaagaaaacaaatctcggagcaaggatgattatcaagctgcagtggaaagattaattatggctgctcgtatatcagatccaaagctcttcattaagcacatgaccgtcaatgttaataaggagcaggtttatagtttggagcactgttctgccctgaaatggttgaaagagaatatgaagtgggctggaaaggtctggcttttcagtaaccattagttaataaaggctttttttttttttttttttttttttttaagttcaagtaatcattgttgaaaataaaaggcagtaaaaatagttttcactgtattcaccttttgccctttattggtttatatagtaagttaatagtttccaaacactaaaagtttggattaaagtatgcaagatggttttatccacactgaaaagtgatttttcaaattactttttgacttccctttaacttag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]