2024-03-28 19:10:55, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_032308531 4802 bp mRNA linear MAM 03-FEB-2020 DEFINITION PREDICTED: Mustela erminea testis and ovary specific PAZ domain containing 1 (TOPAZ1), transcript variant X1, mRNA. ACCESSION XM_032308531 VERSION XM_032308531.1 DBLINK BioProject: PRJNA602914 KEYWORDS RefSeq. SOURCE Mustela erminea (ermine) ORGANISM Mustela erminea Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Mustela. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_045614.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mustela erminea Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4802 /organism="Mustela erminea" /mol_type="mRNA" /isolate="mMusErm1" /db_xref="taxon:36723" /chromosome="1" /sex="male" /tissue_type="spleen (genome), liver, muscle, kidney" /dev_stage="adult" /country="New Zealand: Coromandel" /lat_lon="37.304717 S 175.755071 E" /collected_by="Andrew Veale, Tim Cruickshank" gene 1..4802 /gene="TOPAZ1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:116570889" CDS 144..4568 /gene="TOPAZ1" /codon_start=1 /product="protein TOPAZ1 isoform X1" /protein_id="XP_032164422.1" /db_xref="GeneID:116570889" /translation="
MRRLLPSGPTAAHGREGDARGSRKRGRRPGPGEAGGCGPEVWEREESRQKRRMVARASGREEVESDKSAKEKRKITEASSDDPQPGTDLNENNKYSIEESNVGRKPRKRMKVSEKGDEMIIEMNFSNMYSKSELALQENQTGAEDKGAETLEAKKSPLKVLRKINHNTLSPVGHLLSLPETAGKKTSPGHHVNAMFQKTLEPLLEEEIKNDSEHLGLKSMEPEEYIKLVQSSIVKLPSDCSNFEKRSSWEDLRNEAEELKLGCHRTIPMTGKRTWPCYSCARISAQCWKKSSLPDSNNCLPGSRESFKQDDFLKHQTNQTHLTDSKLSLQSTITETNSESSSKEKLDSNLNCLSLVSTIEPTLMIIKEPIIDDKKIQSEEPSRSGSEVVSNTTEDTQLTNVPQNLTGSKKKDRGNLTKFNLTVASQDVQEANNSIGKTIHRKACIAKQTFVVPDLVKILNTGRLTNFKIPLLKNKTEKKKEINARSSEREAYSPLELLDNLSGAEVRQNRNKENISTVTSGPQSLRIQNSVTPVQANSDSCSCKHSCSISSSFLKQGNDNKPSNHISEPGNIISNKEAVSLTVERNTFSCDLGCIEKSPAFCSNEQETFKPVFSEVSGREMTKNFSEIKMGFPDILKAYEDDVLLIDVIQDDPDLFGVSSEAELSFTSEFPMINQEPNVAEEHQSTDSKHMELPEKKEPSDDLRKLPILDPGLMKSEICASLSAANEIKHDSEGGNITLGKVTNETCESEKLRDFIEHVKRSDLDEKCRFSEKVIIKEEKENIFEVCKSEDSKNAELVVGESQLAVLAPKPLCLSVPPLNISGHQEDILLKPWMNDFRFPGKYSLLKLQNPETCEIFKREKNLGVFQKPLGLMLPHRYCKFHFNTLRGCERSQCKFAHVPEQGDEKVCMDVFKKYISINELCLLQRAVNTFMDYYRKFPPGIHFDLQVLNDLLNSLLKHCLLKEVFQVVNLSIMVKMLPSLKILLKIFEHVATMKLRNAVPALIDIFCKFVEAGMVFDAEHFNYIVKLLYQLQASQQEITAVLEMKSRLQMRQFKKNWKCDLDSALNEIEHCKEKGDWIKLGNLYINIKMGCENFADFQRFCAYIAETLTKDCKEERPGVPFCEFAETVSKDPQNSEVDKTLLGRIGISAMYYYHKLLQWSKGRKVLDKLYELKIHFTSLKGLTGPEKLAPRCQIVNIAAEIFLKSGSLDGAIWVLRESEWIINTPLWPCDRLDVLNRHNLLCTIAHEILAKSLYRQTFEVLQNLPGFQNSQETVEVSQYSLLFNKLLDACIESNSLGMSSSVAEFMISKNIPIDFSFLRRLITSLGRSCLWLKARAHYKSALSLGCYPPLEGNLYRKLLLIPSYLSEIEMLLAIEIFLVSNASSIQSPGTSTQILQIVLKRCEENKSRSKDDYQAAVERLIMAARISDPKLFIKHMTVNVNKEQVYSLEHCSALKWLKENMKWAGKVWLFSNH"
misc_feature 3348..3875 /gene="TOPAZ1" /note="Putative aspartate racemase; Region: Asp_Glu_race_2; pfam14669" /db_xref="CDD:434113" ORIGIN
gcaggcggcgcggagctgggccaaggctggggtcttggcagcggaagcagcttttgcgtggcgggtggccgcctgtgagcgggtgcggccggcctcggagggcatcagcgggcatcgcgggcagggcgggccgcccggggctgatgcggcggctgctgccctcgggccccacggcggcccacgggcgtgaaggcgacgcgcgaggctcgaggaagcgaggccggcggccagggccaggcgaagcgggaggctgcggccctgaggtctgggaacgcgaggagagcaggcaaaagaggagaatggtggcccgggcgtctgggagagaagaggtggaaagtgacaagtcggccaaggaaaaaagaaaaattactgaagcctcaagtgatgatccacagccagggactgacctgaatgaaaacaataaatactcaatagaggagagcaatgttgggagaaaacccaggaaaaggatgaaggtgtctgaaaaaggagatgaaatgattattgagatgaacttctctaatatgtatagcaagtctgagttggcattacaagaaaaccaaacaggtgctgaggataaaggagcagagactttagaggctaaaaaaagtcctttaaaagttttgagaaaaataaaccacaatacactctcgccagtgggtcatttattaagtcttccagaaacagcagggaaaaaaacaagtcctggacatcatgtaaatgctatgtttcagaaaacccttgagccacttttggaagaagaaataaaaaatgattcagagcacttaggattaaaaagcatggagccagaagagtatattaagttggtgcaaagctcgatagtgaaattacctagtgattgcagtaattttgaaaagagatcatcatgggaagacttgagaaatgaagctgaagaattgaagttaggctgtcacagaacaataccgatgactggtaaaagaacttggccttgttattcctgtgctagaatatctgcccagtgttggaaaaagtcttccttgccagattcaaataactgtcttcctgggtctcgggaaagttttaagcaagatgattttcttaaacaccaaacaaatcaaactcacttaactgattctaaattatcattacaaagtaccataacagaaacaaacagtgaatcttcaagtaaagaaaaattggattctaatttaaattgtttgtctttagtctccacaatagaacctactttaatgattataaaggaacccataattgacgataaaaagatacagtcagaggaaccaagcagaagtggttcggaggtagtttctaatactactgaagatactcagctaactaatgtgcctcaaaacttaacaggaagtaaaaaaaaagatagagggaatttaacaaaatttaatttgacagtggcttcccaggatgtccaggaagcaaataactctataggcaaaactattcatcgaaaagcatgcattgctaagcaaacctttgtggttccagacttagtgaaaatactgaacacaggccggctgactaattttaaaattccattacttaagaataaaacagaaaaaaagaaagaaataaatgcaaggtcatcagagagagaagcatatagtcccttagaacttcttgacaatttatctggagctgaggtaagacaaaataggaataaagaaaatatttctacagtaacttcaggacctcagtctttgagaatacaaaatagtgtaactccagtgcaagctaattctgactcatgcagctgcaagcattcctgtagtatttcttcaagttttttaaagcaaggtaatgataataaaccatccaaccacatctctgaaccaggcaatattatttcaaacaaggaagctgtttctctcacagttgaaagaaatactttttcttgtgatcttgggtgtatagagaaaagtcctgctttctgctctaatgaacaagaaacattcaaaccagttttctctgaagttagtggtagagaaatgactaagaacttttcagaaattaaaatggggtttccagatattcttaaagcatatgaagatgatgtcctcttaattgatgtcattcaagatgacccagacctctttggggtctccagtgaagcggagctctcatttacttcagagttccctatgataaaccaggaacccaatgttgctgaagagcaccagtcaacagactctaagcacatggaacttccagaaaaaaaagaaccaagcgatgacttgagaaaacttcccatactggatcctggattgatgaagtcagagatctgtgcttccttatcagcagcaaatgaaattaaacatgattctgaaggtggaaatattaccttagggaaagttactaatgagacctgtgaaagtgaaaagctgagagacttcattgaacatgtaaaacgttcagacttggatgaaaagtgtagattttcagaaaaggtgattattaaagaagaaaaagaaaatatttttgaagtttgcaaaagtgaagattctaaaaatgcagagcttgtggttggtgaaagtcagctagcagtactggccccaaaacctctatgcttatcagtgccacctttgaatataagtggtcatcaagaagacatattactgaagccctggatgaatgatttcagatttccaggaaaatattctctcctaaaactgcaaaatcctgaaacttgtgaaatatttaagagggaaaaaaatttaggggtgttccagaagcccttagggttgatgctaccacatagatactgcaaatttcattttaatacgttacgtggctgtgaacgatcacaatgcaagtttgctcatgtgcctgagcaaggggatgagaaggtctgtatggatgtgtttaagaaatatataagtatcaacgaactgtgtttgctacaacgtgcagtaaacacatttatggattactaccgaaaatttccaccgggtatacactttgatttacaagtgctaaatgaccttctaaattctttactcaaacattgtttattgaaagaagtatttcaggtagtgaacctcagcataatggttaaaatgctgccttctctgaaaatattactaaaaatatttgaacacgtggcaactatgaaattaaggaatgctgtacctgctttaattgatatattttgcaagtttgttgaagctgggatggtatttgatgcagaacactttaactatattgtcaagctcttataccaactacaggcttcccaacaagaaataactgcagttctggaaatgaaatccaggttgcagatgaggcaatttaaaaagaactggaaatgtgatttagattcagccttgaatgaaatagagcattgtaaagaaaaaggtgactggatcaaactgggaaatttatacattaacataaaaatgggctgtgaaaactttgcagatttccagagattttgtgcttatattgctgaaacattaacaaaagactgtaaagaagagagaccaggtgttccattttgtgaatttgctgaaacagttagcaaagatccgcaaaatagtgaagtagataaaactttgttgggaagaattggaatcagtgctatgtactactatcacaagctgttgcagtggtccaagggaaggaaagtcttagataaattatatgaattaaaaatacatttcacaagtttaaaaggacttacagggcctgagaagctagcaccaagatgtcaaattgtgaatattgcagcagaaatttttctaaaaagtggaagcctagatggtgccatttgggtattgagggagtcagaatggatcatcaataccccactgtggccttgtgatagactggatgtactcaatcgacataatctgctctgtacaattgcacatgaaatcttagccaagagcctttatagacagacatttgaagttttgcaaaatctaccaggttttcaaaattctcaagaaactgtggaggtctcacagtatagccttctctttaataaacttctggatgcctgtatagaaagcaacagtcttggtatgtcatcctctgtagcagaattcatgatttcaaagaacatccctattgatttctcctttcttagaagattaattacttctttaggaaggagttgtttatggctcaaagccagagcccactacaaaagtgctctttcattgggttgctacccaccattggagggaaatttatacagaaaacttctactgattccttcctatttatctgagattgaaatgcttttagctattgaaatcttcctggtatctaatgctagtagtattcagagtcctggaacttctacacagatactgcagatagttttgaaaagatgtgaagaaaacaaatctcggagcaaggatgattatcaagctgcagtggaaagattaattatggctgctcgtatatcagatccaaagctcttcattaagcacatgaccgtcaatgttaataaggagcaggtttatagtttggagcactgttctgccctgaaatggttgaaagagaatatgaagtgggctggaaaggtctggcttttcagtaaccattagttaataaaggctttttttttttttttttttttttttttaagttcaagtaatcattgttgaaaataaaaggcagtaaaaatagttttcactgtattcaccttttgccctttattggtttatatagtaagttaatagtttccaaacactaaaagtttggattaaagtatgcaagatggttttatccacactgaaaagtgatttttcaaattactttttgacttccctttaacttag
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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