2024-04-27 04:28:18, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_032298096 5326 bp mRNA linear PRI 02-FEB-2020 DEFINITION PREDICTED: Sapajus apella testis and ovary specific PAZ domain containing 1 (TOPAZ1), mRNA. ACCESSION XM_032298096 VERSION XM_032298096.1 DBLINK BioProject: PRJNA599380 KEYWORDS RefSeq. SOURCE Sapajus apella (tufted capuchin) ORGANISM Sapajus apella Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Cebinae; Sapajus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_022436978.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Sapajus apella Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5326 /organism="Sapajus apella" /mol_type="mRNA" /isolate="SASKATOON/1434" /db_xref="taxon:9515" /chromosome="Unknown" /sex="female" /tissue_type="blood" /dev_stage="adult" gene 1..5326 /gene="TOPAZ1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs, 3 Proteins, and 80% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:116564771" CDS 174..5234 /gene="TOPAZ1" /codon_start=1 /product="protein TOPAZ1" /protein_id="XP_032153987.1" /db_xref="GeneID:116564771" /translation="
MRRPPPLGPTRAPGPEGNVRSLRKRQAPGPGAARGCGPEAGGRRENRQKRRMVAQATPGKDKVERDKSVPASGAEKAARRRVEGPRGQVSPSDRRGVQAAKEADLRLQTERHTKEKRKVTEASSDDPEPGIDLVRKESLTSSESFQTVECLQSLGKEGIVEGIKRRIRNKKLKSLENPPLKITENEATQNINVEFQDELYKNTPKYSCNILSPEVENNSILKLHDCNCFPHSKGCNDENNLPYKPDGGYMHVAENSSKLKKENLRSLAEKSDTNSISRLLQTQESVMGVNKLPLEESDLCQGKTNDLLSCLQREKNKYSIEESSVGRKSRKRMKSEKAGETVTEMNFSEYNKSELMLQEKKMIADGKEAETKGPLNVLRKVSHNTVSLMDHLLSFPETVGKETSPEYHVNAVCQKTIEPLLKEETENASEPLGYESMAQTEDFKSMKSSIGKSPNEYHIEKRSSRESEEFKLSCQRTIPMTGKRTWPYYSCARISAWCWKKASLPESSYFLPGSQESCRQGDVLKHQTNETHLTDSKLLLQSSLTETNTESSSKEKLDSNSNCLSSVSAIEPTLMIMKEPIIKDDKKIKSEELSRSGSEVISNTTEDTQLTSETQILTGNKKKDRGNFTKQNLTATSKDDQEANNSTGKTVHRKACIAKQTFVVPDLVKILNTGRLTNFKIPLLKNKTEKRKEINAKSSEREPYSPLELLDNLSGAEVRQNRSKENISMTTLGPQTLSIRNSVAPAQASSDSFHNKNSCSIYPRFTKQGNNNKPSNHISERGNIVSNKEVASLTVENNAFSCDPGYVEKNSSFSCNEQETFQPVSSEVSGRKITKNFSEIKVGCPDILKAYEDDVLLIDVIQDDPDLFGVSNEGELSFTSEVPRISQEPGVAGEHQSTDFKYMETPIKKEPSDDLRELSVLDCGSIKSETCTSNSAAREIRHDSKDANTSLGKVANEASENETLGDFSEQIKDSNLDEKHRFTNKVITKEEKENIYEVCKSKDSRNADIMVDECQFAAPVPKPLCLLVPPLNLSGHQEETILNTWMNDFRFLGKHSVLKLQNPATCEIVKREKNVGVFQKSLGLMIPYKYCKFHFNTLRGCERPLCKFVHVPEQGDEKVCMDVFKKYININELCLLQRAVNIFMEYYRKFPPGIHFDLQVLNDLLNSLLKHGLLKEVFQIVNLSIMVKIQPSLKILLNIFEHVATMKLRNAVPALTDIFCKLIEAGMVLDPKHFNYIVKLLYQVQASKQEITAVLEMKSRLQMRQFKKNWKCDLDSALNKLEHCKERGDWTRLGKLYLNVKMGCEKFADFETFCACIAKTLTKNYEEERPDVPFCEFAETVSKDPQNSKVDKSVLGRIGISALYFYHKLLQWSKGRKVLDKLYELKIHFTSLKGLIGPEMLASRCQIVNVAAEIFLKSGSLNGAIWVMRESEWIIDTPLWPCDRLDVLNRHNLLCTIAHDILAKSLFRQAFEVLQNLPGFQNSQETVEVSQYSILFNKLLDSCIESNSLGMSSSVAEFMISKSIPIDFSFLRRLITSLGRSCLWLKARAHYKSALSLGCYPQLEGNLYRKLLLIPSYLSEIEMLLAIEIFMVSNAGSIQSPGTSTQILQIVLKRCENNQSRRNDDYQAAVERLIMAARISDPKLFIKHMTVNVNKEQVYSLEHCSALKWLNENMKWAGKVWLFSNH"
misc_feature <180..>473 /gene="TOPAZ1" /note="EBNA-3B; Provisional; Region: PHA03378" /db_xref="CDD:223065" misc_feature 4014..4541 /gene="TOPAZ1" /note="Putative aspartate racemase; Region: Asp_Glu_race_2; pfam14669" /db_xref="CDD:434113" ORIGIN
acttccgcttacgcgccccacttccgcttccggccctaggctgtggtggctagcggtgtggggtgggttagaaggcagtaggtgctggaggcggaggcgggtgccgtctttgcgcggcggtgggatcctgcgagctggtgcggaggagcaccggcgggccagccccggggcacatgcggcgaccaccacccctgggccccacgagggccccgggtcctgaaggcaatgtgagaagcctgcggaaacggcaggcgccagggccaggcgcagcgagaggctgcggccctgaggccggggggcgcagggaaaataggcaaaagaggagaatggtggcccaggccacccctgggaaagacaaggtggaaagagacaagtcggttccggcatcaggtgctgaaaaggccgcaaggcgtcgagtggaggggcccaggggccaggtgagcccgtcagaccggcgaggcgtacaagcagcaaaggaggctgacctccgcttgcaaacggaaagacacaccaaggaaaaaagaaaagttactgaagcctcaagtgatgatcctgagccagggattgacctggtaagaaaggaatcattaaccagttcggaatctttccaaacagtggaatgcttgcagtctttgggtaaggaaggtatagtggaaggcattaaaagaagaattcgaaataaaaaacttaaaagcttagaaaacccacctctcaaaataacagaaaatgaggctacacaaaatattaatgttgaattccaagatgaactgtacaagaatactccaaaatattcttgtaacatcttgtcacctgaagtagaaaataattccattttgaaattacatgattgcaattgtttcccccattccaagggttgtaatgatgaaaacaacctgccatataagcctgatggtggatatatgcatgtagcagaaaattcctcaaagctaaagaaagaaaaccttaggagtcttgcagagaagagtgacacaaatagtatttctcggcttttacaaacccaagaaagtgtaatgggagtaaataagttaccactagaagagagtgatttatgccaaggtaaaaccaatgacttgctttcctgccttcaacgtgaaaaaaataaatactcaatagaggagagcagtgttgggcgaaaatccaggaaaagaatgaagtctgaaaaagcaggtgaaacagttactgagatgaacttttctgagtataacaagtctgagttgatgttacaagaaaaaaaaatgattgctgatggtaaagaagcagagactaaaggtcctttaaatgttttgagaaaagtaagccataatacagtctctctgatggatcatttattaagtttcccagaaacggtaggaaaagaaacaagtcctgaatatcatgtaaatgctgtgtgtcagaaaaccattgaaccacttttgaaagaagaaacagagaatgcttcagagcccttaggatatgaaagcatggcacagacagaggattttaaatcgatgaaaagctccatagggaaatcacctaatgagtaccatattgaaaagagatcttcacgggaatctgaagaatttaagttaagctgtcagagaacaatacctatgactggtaaaagaacttggccttattattcatgtgctagaatatctgcttggtgttggaaaaaggcttccttgccagaatcaagttactttcttccggggtctcaggaaagttgtaggcaaggtgatgttcttaaacaccaaacaaacgagacccacttaactgactccaaattattattacaaagttccttaacagaaacaaacactgaatcttcaagtaaagaaaaactagattctaattcgaattgtttgtcttcagtttctgcaatagaacctactttaatgattatgaaggaacctataatcaaggatgataaaaagataaaatcagaggaactgagcagaagtgggtcagaggtaatttctaacactactgaagatactcagttaaccagtgagactcaaatcttaacaggaaataaaaaaaaagatagaggaaatttcacaaaacaaaatttgacagcgacttccaaagatgatcaggaagcaaataactctacaggcaaaactgttcatcgaaaagcatgcattgctaaacaaacatttgtagttccagacttggttaaaatattgaacacaggaaggctaactaattttaaaattcctttacttaagaataaaacagaaaaaagaaaagaaataaatgccaagtcatcagagagagaaccttacagtcctctagaacttctggacaatttatctggagcggaggtaagacagaataggagtaaagaaaatatctccatgacaacattaggacctcaaactttgagcatacgaaatagcgtagctccagcgcaagctagttctgattcattccacaataagaattcctgtagtatttatccaaggtttacaaagcaaggtaacaataacaaaccatctaatcacatctctgaacgaggcaatattgtgtctaataaagaagttgcttctctcacagttgaaaataatgctttttcttgtgatcctgggtatgtagagaaaaattcttccttcagctgtaatgaacaagaaacattccaaccagtttccagtgaagttagtggtagaaaaataactaagaatttttcagaaatcaaagtagggtgtccagatattcttaaagcatatgaagatgatgtcctcttaattgatgtaattcaagatgacccagacctctttggagtctccaatgaaggagagctctcatttacttcagaggtccctaggataagccaggagcccggtgttgctggagagcaccaatcaacagacttcaagtacatggaaactccaataaaaaaagaaccaagtgatgacttgagagaactttctgtactggactgtggatcgataaagtcagagacctgtacttccaactcagcagcaagggaaataagacatgattccaaagatgcgaacacttccttaggaaaagttgctaatgaggcctctgaaaatgaaacactgggagacttcagtgaacaaataaaagattcaaacttggatgaaaagcatagatttacaaacaaagtgattacgaaagaagaaaaagaaaacatttatgaagtgtgcaaaagcaaagattctagaaatgcagacattatggttgatgaatgccagtttgcagcaccagtcccaaaacctctgtgcttattagtacctcctttgaatctaagtggtcatcaagaagaaacaatactgaatacctggatgaatgatttcagatttttgggaaaacattctgtcctaaagctgcagaatcctgcaacttgtgaaatagttaagagggaaaaaaatgtgggggtgttccagaagtccctggggttgatgataccctataaatattgcaaatttcattttaatacgttacgtggctgtgagcgtccactgtgcaagtttgttcatgtgcctgaacaaggggatgaaaaggtttgcatggatgtgtttaagaaatatataaatatcaatgaactgtgtttgctacagcgtgcagtaaacatatttatggaatactacagaaagtttcccccaggtatacactttgatttgcaagtgctaaatgaccttctaaattctttactcaaacatggtttattgaaagaagtatttcaaatagtgaacctcagcataatggttaaaatacagccttctctgaaaatattactaaacatatttgagcatgtggcaactatgaaattaaggaatgctgtacctgctttaactgatatattttgcaagcttattgaagctgggatggtccttgacccaaagcactttaactatattgttaagctcttataccaagtacaagcttccaaacaagaaataactgcagttctggaaatgaaatccaggttacagatgaggcaatttaaaaagaattggaagtgtgatttagattcggccttgaataaattagagcattgtaaagaaagaggtgactggaccagattgggaaaattgtacctaaatgtaaaaatgggctgtgaaaaatttgcggattttgagacattttgtgcttgcattgctaaaacacttacaaaaaactatgaagaagaaagaccagatgttcctttttgtgaatttgctgaaacagttagcaaagatccacaaaacagtaaagtagataaaagtgtgctgggaagaatcggaatcagtgctttgtacttctatcacaagctgttgcagtggtccaagggaaggaaggtcttagataaactatatgaattaaaaatacactttacaagtttaaaaggacttatagggcctgagatgttagcatcaagatgtcagattgtgaatgttgcagcagaaatttttctaaaaagtggaagcctaaatggtgccatttgggtaatgagggagtcagaatggataatcgatacgcctctgtggccttgtgataggctggatgtgcttaatcgacataatttgctctgtacaattgcacatgacatcttagccaagagcctttttagacaggcatttgaagttttgcagaatctaccaggttttcagaattctcaagaaactgtggaagtctcgcaatatagcattctttttaataagcttctagattcctgtatagaaagcaacagtcttggtatgtcatcctctgtggcagaattcatgatttcaaagagcatacctattgatttttcctttcttagaagattaattacttctttaggaaggagttgtttatggctcaaagccagagcccactacaaaagtgctctttccttgggttgctacccacaactggaaggaaatttataccgaaaacttcttctaattccatcttatttatctgagattgaaatgcttttagcgattgaaatcttcatggtatctaatgctggtagtattcagagtcctggaacttctacacagatactacagatagttttgaaaaggtgtgaaaacaaccagtctcggaggaatgatgattatcaagccgcagtggaaaggttaattatggctgctcgtatatcggatccaaagcttttcatcaaacacatgactgtcaatgttaataaggaacaagtttatagtttggaacattgttctgccctgaaatggttaaatgagaatatgaagtgggctggaaaggtttggcttttcagtaaccattagttaataaagtctgctcttttttttttttttttaagttcaagtaatcattgttgaaaataaaaggcaataaaaataaagacagtttcactata
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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