GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-03-28 20:01:00, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_032294548            7146 bp    mRNA    linear   PRI 02-FEB-2020
DEFINITION  PREDICTED: Sapajus apella ATPase copper transporting beta (ATP7B),
            transcript variant X4, mRNA.
ACCESSION   XM_032294548
VERSION     XM_032294548.1
DBLINK      BioProject: PRJNA599380
KEYWORDS    RefSeq.
SOURCE      Sapajus apella (tufted capuchin)
  ORGANISM  Sapajus apella
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Platyrrhini; Cebidae; Cebinae; Sapajus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_022436972.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Sapajus apella Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7146
                     /organism="Sapajus apella"
                     /mol_type="mRNA"
                     /isolate="SASKATOON/1434"
                     /db_xref="taxon:9515"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
     gene            1..7146
                     /gene="ATP7B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 79 ESTs, 23 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 29 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116562360"
     CDS             710..5098
                     /gene="ATP7B"
                     /codon_start=1
                     /product="copper-transporting ATPase 2 isoform X4"
                     /protein_id="XP_032150439.1"
                     /db_xref="GeneID:116562360"
                     /translation="
MPEQERQITAREGASRKILSKLSLPNRAWEPAMKKSFAFDNVGYEGGLDGLGPSSQVTTSTIKILGMTCQSCVKSIEDRISSLKGIVSVKVSLEQGSATVNYVPSVLSPQQVCHQIGDMGFEASIAEGKAASWPSRSLPAQEAVVKLRVEGMTCQSCVSSIEGKVRKLQGVVRVKVSLSNQEAVITYQPYLIQPEDLRDHVNDMGFEAAIKNKVAPLSLGPIDIERLQSTYPKRPFTSNQNFNNSETLGHQGNHVVTLQLRIDGMHCTSCILNIEENIGQLPGIQSIQVSLENKTAQVQYDPSCTSPVSLQRAIEALPPGNFKVSLPDGAEGCGTEHRPSGSHSLGFSQRNQAQGTCSTAVIAIAGMTCASCVHSIEGMISQREGVQQISVSLAEGTGTVLYNPSVISPEELSTAIEDMGFEASVISENCSTNSLGNHSAGNSMVQTTGGVPASVQEVAPHAGGLPTNHTLDILAKSPQSTRAVALQKCFLQIKGMTCASCVSTIERNLQNKAGILSVLVALMAGKAEIKYDPEVIQPLEIAQLIQDLGFEAAVMEDYAGSDGSIELIITGMTCASCVHNIESKLTRTDGITYASVALATSKALVKFDPEIIGPRDIIKIIEEIGFHASLAQRNPNAHHLDHKMEIKQWKKSFLCSLVFGIPVMALMIYMLIPSNEPHESMVLDHNIIPGLSILNLIFFILCTFVQLLGGWYFYVQAYKSLRHRSANMDVLIVLATSIAYVYSLVILVVAVAEKAERSPVTFFDTPPMLFVFVALGRWLEHLAKSKTSEALAKLMSLQAAEATVVTLGEDNLIIREEQVPMELVQRGDIVKVVPGGKFPVDGKVLEGNTMADESLITGEAMPVTKKPGSTVIAGSINAHGAVLIKATHVGNDTTLAQIVKLVEEAQMSKAPIQQLADRFSGYFVPFIIIMSTLTLVVWIVIGFIDFDVVQKYFPNPNKHISQTEVIIRFAFQTSITVLCIACPCSLGLATPTAVMVGTGVAAQNGILIKGGKPLEMAHKIKTVMFDKTGTITHGVPRVMRVLLLGDVAKLPLRKVLAVVGTAEASSEHPLGVAVTKYCKEELGTETLGYCTDFQAVPGCGIGCKVSIMEGILAHSGSPLSASHLNEAGSLPEEKDAAPQTFSVLIGNREWLRRNGLTISSDVSDAMTDHEMKGQTAILVAIDGVLCGMIAIADAVKQEAALAVHTLQSMGIDVVLITGDNRKTARAIATQVGINKVFAEVLPSHKVAKVQELQNQGKKVAMVGDGVNDSPALAQADMGVAIGTGTDVAIEAADVVLIRNDLLDLVASIHLSKRTVRRIRINLVLALIYNLVGIPIAAGVFMPVGIVLQPWMGSAAMAASSVSVVLSSLQLKCYKKPDLERYEAQLHGRMKPLTASQVSVHIGMDDRRRDSPRATPWDQVSYVSQVSLSSLTSNKPSRQSAAVDDGGDKWSLLLNDRDEEQYI"
     misc_feature    890..1081
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(908..916,923..925)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1145..1336
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(1163..1171,1178..1180)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1484..1660
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(1502..1510,1517..1519)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1790..1981
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(1808..1816,1823..1825)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    2180..2368
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(2195..2203,2210..2212)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    2405..2596
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(2423..2431,2438..2440)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    2660..4762
                     /gene="ATP7B"
                     /note="P-type heavy metal-transporting ATPase, similar to
                     human copper-transporting ATPases, ATP7A and ATP7B;
                     Region: P-type_ATPase_Cu-like; cd02094"
                     /db_xref="CDD:319783"
     misc_feature    order(3653..3655,3659..3661,4691..4693)
                     /gene="ATP7B"
                     /note="putative Cu binding site [ion binding]; other site"
                     /db_xref="CDD:319783"
     misc_feature    order(3785..3793,3995..3997,4142..4150,4238..4240,
                     4358..4366,4424..4426,4433..4435,4442..4444,4499..4501,
                     4508..4510)
                     /gene="ATP7B"
                     /note="putative ATP binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:319783"
     misc_feature    3785..3805
                     /gene="ATP7B"
                     /note="P-type ATPase signature motif; other site"
                     /db_xref="CDD:319783"
     misc_feature    3785..3787
                     /gene="ATP7B"
                     /note="phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:319783"
ORIGIN      
gaccccgcccccggtcgagagcccgccacccgttggaggccagtggctggcctttgcacaccacagatcgatttttcaggtgcggagttcactctcgccgcggttgcttcctttgggatccgaggcaccggcagccaggctcagagtccgaagaggggcggcgcagagcggacccgttgcggcgccacccggcaccttccctgcaggcgttgggctagctctgggagccgggtctgcggcccggttctgcgccgctcacctgcccttccgctcccgcacacgcctgagatcccaggacagtgtaggagcgaaccggcgcgaggtggccgagaccgcggaccaggacgggcctccctgtggcaccggcacggccgaggacactgaggcaccggcggggccggcagctccagggcgggcactgccagccccccagggagtgggtgagagtccgaggcccactcgccccgcatccgcgggtcgggaggacggcggcgcgcaacgttgaaacagccttgtggctagggcagcacattgcccagtcccaaatcaactggcggcgcccggacccctccttgcattagagccgggccaacgccctcacgcccagcgcctcctctcccggtggctttacaccgcgccctcctccgccgacctggtgacctttggctctgagccggatcagagaagaattccgtgtccgcgcgggacgatgcctgagcaggagagacagatcacagccagagaaggggccagtcggaaaatcttatctaaactttctttgcctaaccgtgcctgggaaccagcaatgaagaagagctttgcttttgacaatgttggctatgaaggtggtctggatggcctcggcccttcttctcaggtgaccaccagcacaatcaagatcttgggcatgacttgccagtcttgtgtgaagtccattgaggacaggatttccagtttgaaaggcatcgtgagcgttaaggtttccctggagcaaggcagtgccactgtgaactatgtgccatcggttttgagcccacaacaggtttgtcatcaaattggggacatgggcttcgaggccagcattgcagaaggaaaggcagcctcctggccctcaaggtccttgcctgcccaggaggctgtggtcaagctccgggtagaaggcatgacctgccagtcctgtgtcagctccattgaaggcaaggtccggaaactgcaaggagtagtgagagtcaaagtctcactcagcaaccaagaggccgtcatcacctatcagccttatctcattcagcccgaagacctcagggaccatgtaaacgacatgggatttgaggctgccatcaagaacaaagtggctcccttaagcctgggaccaattgatattgagcggttacaaagcacttacccaaagagacctttcacttctaaccagaattttaataattcagagaccttggggcaccaaggaaaccatgtggtcaccctccaactgagaatagatggaatgcactgtacatcttgcatcttgaatattgaagaaaatattggccagctcccagggattcaaagtattcaagtgtccttggagaacaaaactgcccaagtacagtatgacccttcttgtaccagcccagtgtctctgcagagggctatcgaagcacttccacctgggaactttaaagtttctcttcctgatggagcagaagggtgtgggacagagcacaggccttccggttctcattcccttggcttctcccagagaaaccaggcgcagggcacgtgcagtaccgctgtgattgccattgctggcatgacctgtgcgtcctgtgtccattccattgaaggcatgatctcccagcgggaaggggtgcagcaaatatcggtctctttggccgaagggactggaacagttctttataatccctccgtaattagcccagaagaactcagcactgctatagaagacatgggatttgaggcttcagtcatttctgaaaactgttccaccaactctcttggaaaccacagtgctgggaattccatggtgcaaactacaggtggtgtacctgcgtctgtgcaggaagtggctccccatgctggggggctccctaccaatcacaccctggacatcttggcaaagtccccacaatcaaccagagcagtggcactgcagaagtgcttcttacagatcaaaggcatgacctgtgcatcctgtgtatctaccatagaaaggaatctgcagaataaagctggtattctctccgtgttggttgccttgatggcaggaaaggcagagatcaaatatgatccggaggtcatccagccactcgagatagctcagctgatccaggacctgggctttgaggcagcagtcatggaggactacgcaggctctgatggcagcattgagctgattatcacagggatgacctgcgcgtcctgtgtccacaacatagagtccaaactcacgaggacagacggcatcacctatgcctccgttgcccttgccaccagcaaagcccttgttaagtttgatccagaaattatcggtccacgggatattatcaaaattattgaggaaattggctttcatgcttccctggcccagagaaaccccaacgctcatcacttggaccacaagatggaaataaagcagtggaagaagtccttcctgtgcagcctggtgtttggcatccctgtcatggctttaatgatctatatgctgatacccagcaacgagccccacgagtctatggtcctggaccacaacatcattccaggactgtccattctaaatctcatcttctttatcctgtgcaccttcgtccagctcctcggtgggtggtacttctatgttcaggcctataaatctctgagacacaggtcagccaacatggatgtgctcatcgtcctggccacaagcattgcctatgtctattctctggtcatcctggtggttgctgtggccgagaaggcggagaggagccctgtgacattctttgacacgccccccatgctcttcgtgttcgttgccctggggcggtggctggaacacttggcaaagagcaaaacctcagaagcccttgccaaactcatgtctctccaagctgcagaagccactgttgtgacccttggtgaggacaatttaatcatcagggaggagcaagtccccatggagctggtgcagcggggcgatatcgtcaaggtggtccctgggggaaagttcccagtggacgggaaagtcctggaaggcaataccatggctgatgagtcactcatcacaggagaagccatgccagtcactaagaaacccggaagcactgtaattgcagggtctataaatgcacatggcgctgtgctcattaaagccacccacgtgggcaatgacaccactttggctcagattgtgaaattggtggaagaggctcagatgtcaaaggcacccattcagcaactggctgaccggtttagtggatattttgtcccatttatcatcatcatgtcaactttgacgttggtggtatggattgtaatcggttttatcgattttgatgttgttcagaagtactttcctaaccccaacaagcacatctcccagacagaggtgatcatccggtttgcgttccagacgtccatcacagtgctgtgcatcgcctgcccctgttccctggggctggccacgcccacagctgtcatggtgggcactggggtggctgcgcagaatggcatcctcatcaagggtggcaagcccctggagatggcgcacaagataaagactgtgatgtttgacaagactggcaccattacccatggggtccccagggtcatgcgggtgctcctgctgggggatgtggccaaactgcccctcaggaaggttctggctgtggtggggactgcagaggccagcagtgaacaccccttgggcgtggcagtcaccaaatattgtaaagaggaacttggaacagagaccttgggatactgcacagacttccaggcggtgccaggctgtggaatcgggtgcaaagtcagcatcatggaaggtatcctggcccacagtgggagccctctgagtgccagtcatctgaatgaggctggcagccttcccgaagaaaaagatgcagccccccagaccttctctgtgctgattggaaaccgtgaatggctgaggcgcaacggcttaaccatttccagtgatgtcagtgacgctatgacagaccacgagatgaaaggacagacagctatcctggtggctattgacggtgtgctctgtgggatgattgccatcgcagatgctgtcaagcaggaggccgccctggctgtgcacacgctgcagagcatgggtatagatgtggttctgattacgggggacaaccggaaaacagccagagccattgccacccaggttggcatcaacaaagtctttgcagaggtgctgccttcccacaaggtggccaaggtccaggagcttcagaaccaagggaagaaagttgccatggtgggagatggggtcaacgactccccggccctggcccaggcagacatgggtgtcgccattggcaccggcacagatgtggccatcgaggcagccgacgtcgtcctcattagaaatgatttgctggacttggtggctagcattcacctttccaagaggactgtccggaggatacgcatcaacctggtcctggcactgatttataacctggttgggatacccattgcggcaggtgtcttcatgcccgtcggcattgtgctgcagccctggatgggctcggcggccatggcagcctcctccgtgtctgtggtgctctcatccctgcagctcaagtgctataagaagcctgacctggagaggtacgaggcacagctgcatggccgcatgaagcccttgacggcatcccaggtcagtgtgcacatcggcatggatgacaggcggagggactcccccagggccacgccgtgggaccaggtcagctatgtcagccaggtgtcactgtcctccctgacgtccaacaagccatctcggcagagcgctgcagtggacgatggtggggacaagtggtctctgctcctgaatgacagggatgaggagcagtacatctgatggctccaggtgggcaggcccagggcagggacttgcctccactcgccacaagccaagcaggacagcccgcagcaggatgggcagagctagcctccagctttggggacttccacaccctggacgtgtccagtcaccccgccctgcgatgcatggtcttgtctcagtggagctggctttggcctggagaggatgttactgcctgcttcctggcctcactgggctgtcagcatgggctttgtcttggactctgatccttgcctgtgggactgtagaagatgagaggtgtgtcaccctcctcacagacctctcctggaatatttagggcgactactgtgaaatggagaacagtttcatcaggaccaaaaaacctcactgggcctttccagagaaccacagacctcactgtcaggctctttctgatgacgcctgcgtgcctcatgtttctgagaccacagtttacctcaagtgtgtctgttgctttctgcttgcacagtctgtaccttttctgtcctgtgtgctttcactggggaccccgtgtgaccctgcctatcacctaggaggggaggaccaatgtccttgtggtccctgctgctgctctcaggcgcttctccaaagctctggagtgtgcatttcagcctgaatctgcttcctggcatgcacatccccagccagggagcttgccacatcctccttcaaatcgaggcgagttctttcttgcttaagcgccccttctctgtagagtgggggcttctcaatagagtgttgttgctgaccagctggagtgagggtctcagagcctgacctgaatgtctagcctcggcttcctgtggagtctaggtgctcacagttcagggcgtccttctgtgtccctgcccagcctgtggtgctcaaaacaggtgccccatgatagatatatgtgtgcaggagcctccctgcatggccccaggagcttcgttttcacagtcttctgtgtgattgtcacctcgtggggtccggtagagcattcatgtcactagtgtctggcgttgtatgggttggaggaagcagtgccgcccaaataggaggaaagcacagcctccctgagcctgccttctgcatgctgcccaggggcctcaggaaaggagtggccacagctccactgtttacctgacagtggctctcagagcagcagaaggggtccagttattgactctgaagttggtggcaattgacagaaccccttggagtgaactagtagagttggattaaattctgggtgaaactcctgtctcccacacaaaatagttgtagttatttttttgagtgtccattacttaccagaggaagtgttagcagcacttttgatagattacctctaatcttccagcaaaccagcaagatagctgtgactgtccacattttacaggcaaggaaacaggctccgagaagctgaggacctcgcccagggtgacatagccagtggacgtgccgtgtctgtcggctctgaaggctttactctaattgtccttttgccttgaatagaaatttgcctcataagaataaaaaagaaaaaagtctttgcctcctggaagaacaaatctaccacgtgatcaagtaattatttcaactcagaatgcagttgactcaggaggtcctctgaccttttccttggatggttagtttcgccttttacatatagtttttgtggggttttattttatgaaatccaagcacgccgttcgttgtgttttcgttgttttcagcccctgctccagccccagcggattcctgctttctgtccgtaattgcgtcctctctttatgcttgcttggggaatgtcgtttcctgaccaggctgatctttatctaaaaaatctgtgttgatttttaaaacttttaggaccataaacattgtgttcatctatagacttggaaatatttatataattttatagaaaataaccttttagatggtcaaagtataaggaattttttttgtcagataaccatttctacttcaaaagcattccatgcaatattagaataaagttcctgtcattcctctaaaaa
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]