2024-03-28 20:01:00, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_032294548 7146 bp mRNA linear PRI 02-FEB-2020 DEFINITION PREDICTED: Sapajus apella ATPase copper transporting beta (ATP7B), transcript variant X4, mRNA. ACCESSION XM_032294548 VERSION XM_032294548.1 DBLINK BioProject: PRJNA599380 KEYWORDS RefSeq. SOURCE Sapajus apella (tufted capuchin) ORGANISM Sapajus apella Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Cebinae; Sapajus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_022436972.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Sapajus apella Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7146 /organism="Sapajus apella" /mol_type="mRNA" /isolate="SASKATOON/1434" /db_xref="taxon:9515" /chromosome="Unknown" /sex="female" /tissue_type="blood" /dev_stage="adult" gene 1..7146 /gene="ATP7B" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 79 ESTs, 23 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns" /db_xref="GeneID:116562360" CDS 710..5098 /gene="ATP7B" /codon_start=1 /product="copper-transporting ATPase 2 isoform X4" /protein_id="XP_032150439.1" /db_xref="GeneID:116562360" /translation="
MPEQERQITAREGASRKILSKLSLPNRAWEPAMKKSFAFDNVGYEGGLDGLGPSSQVTTSTIKILGMTCQSCVKSIEDRISSLKGIVSVKVSLEQGSATVNYVPSVLSPQQVCHQIGDMGFEASIAEGKAASWPSRSLPAQEAVVKLRVEGMTCQSCVSSIEGKVRKLQGVVRVKVSLSNQEAVITYQPYLIQPEDLRDHVNDMGFEAAIKNKVAPLSLGPIDIERLQSTYPKRPFTSNQNFNNSETLGHQGNHVVTLQLRIDGMHCTSCILNIEENIGQLPGIQSIQVSLENKTAQVQYDPSCTSPVSLQRAIEALPPGNFKVSLPDGAEGCGTEHRPSGSHSLGFSQRNQAQGTCSTAVIAIAGMTCASCVHSIEGMISQREGVQQISVSLAEGTGTVLYNPSVISPEELSTAIEDMGFEASVISENCSTNSLGNHSAGNSMVQTTGGVPASVQEVAPHAGGLPTNHTLDILAKSPQSTRAVALQKCFLQIKGMTCASCVSTIERNLQNKAGILSVLVALMAGKAEIKYDPEVIQPLEIAQLIQDLGFEAAVMEDYAGSDGSIELIITGMTCASCVHNIESKLTRTDGITYASVALATSKALVKFDPEIIGPRDIIKIIEEIGFHASLAQRNPNAHHLDHKMEIKQWKKSFLCSLVFGIPVMALMIYMLIPSNEPHESMVLDHNIIPGLSILNLIFFILCTFVQLLGGWYFYVQAYKSLRHRSANMDVLIVLATSIAYVYSLVILVVAVAEKAERSPVTFFDTPPMLFVFVALGRWLEHLAKSKTSEALAKLMSLQAAEATVVTLGEDNLIIREEQVPMELVQRGDIVKVVPGGKFPVDGKVLEGNTMADESLITGEAMPVTKKPGSTVIAGSINAHGAVLIKATHVGNDTTLAQIVKLVEEAQMSKAPIQQLADRFSGYFVPFIIIMSTLTLVVWIVIGFIDFDVVQKYFPNPNKHISQTEVIIRFAFQTSITVLCIACPCSLGLATPTAVMVGTGVAAQNGILIKGGKPLEMAHKIKTVMFDKTGTITHGVPRVMRVLLLGDVAKLPLRKVLAVVGTAEASSEHPLGVAVTKYCKEELGTETLGYCTDFQAVPGCGIGCKVSIMEGILAHSGSPLSASHLNEAGSLPEEKDAAPQTFSVLIGNREWLRRNGLTISSDVSDAMTDHEMKGQTAILVAIDGVLCGMIAIADAVKQEAALAVHTLQSMGIDVVLITGDNRKTARAIATQVGINKVFAEVLPSHKVAKVQELQNQGKKVAMVGDGVNDSPALAQADMGVAIGTGTDVAIEAADVVLIRNDLLDLVASIHLSKRTVRRIRINLVLALIYNLVGIPIAAGVFMPVGIVLQPWMGSAAMAASSVSVVLSSLQLKCYKKPDLERYEAQLHGRMKPLTASQVSVHIGMDDRRRDSPRATPWDQVSYVSQVSLSSLTSNKPSRQSAAVDDGGDKWSLLLNDRDEEQYI"
misc_feature 890..1081 /gene="ATP7B" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(908..916,923..925) /gene="ATP7B" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1145..1336 /gene="ATP7B" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(1163..1171,1178..1180) /gene="ATP7B" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1484..1660 /gene="ATP7B" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(1502..1510,1517..1519) /gene="ATP7B" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1790..1981 /gene="ATP7B" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(1808..1816,1823..1825) /gene="ATP7B" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 2180..2368 /gene="ATP7B" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(2195..2203,2210..2212) /gene="ATP7B" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 2405..2596 /gene="ATP7B" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(2423..2431,2438..2440) /gene="ATP7B" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 2660..4762 /gene="ATP7B" /note="P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B; Region: P-type_ATPase_Cu-like; cd02094" /db_xref="CDD:319783" misc_feature order(3653..3655,3659..3661,4691..4693) /gene="ATP7B" /note="putative Cu binding site [ion binding]; other site" /db_xref="CDD:319783" misc_feature order(3785..3793,3995..3997,4142..4150,4238..4240, 4358..4366,4424..4426,4433..4435,4442..4444,4499..4501, 4508..4510) /gene="ATP7B" /note="putative ATP binding site [chemical binding]; other site" /db_xref="CDD:319783" misc_feature 3785..3805 /gene="ATP7B" /note="P-type ATPase signature motif; other site" /db_xref="CDD:319783" misc_feature 3785..3787 /gene="ATP7B" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:319783" ORIGIN
gaccccgcccccggtcgagagcccgccacccgttggaggccagtggctggcctttgcacaccacagatcgatttttcaggtgcggagttcactctcgccgcggttgcttcctttgggatccgaggcaccggcagccaggctcagagtccgaagaggggcggcgcagagcggacccgttgcggcgccacccggcaccttccctgcaggcgttgggctagctctgggagccgggtctgcggcccggttctgcgccgctcacctgcccttccgctcccgcacacgcctgagatcccaggacagtgtaggagcgaaccggcgcgaggtggccgagaccgcggaccaggacgggcctccctgtggcaccggcacggccgaggacactgaggcaccggcggggccggcagctccagggcgggcactgccagccccccagggagtgggtgagagtccgaggcccactcgccccgcatccgcgggtcgggaggacggcggcgcgcaacgttgaaacagccttgtggctagggcagcacattgcccagtcccaaatcaactggcggcgcccggacccctccttgcattagagccgggccaacgccctcacgcccagcgcctcctctcccggtggctttacaccgcgccctcctccgccgacctggtgacctttggctctgagccggatcagagaagaattccgtgtccgcgcgggacgatgcctgagcaggagagacagatcacagccagagaaggggccagtcggaaaatcttatctaaactttctttgcctaaccgtgcctgggaaccagcaatgaagaagagctttgcttttgacaatgttggctatgaaggtggtctggatggcctcggcccttcttctcaggtgaccaccagcacaatcaagatcttgggcatgacttgccagtcttgtgtgaagtccattgaggacaggatttccagtttgaaaggcatcgtgagcgttaaggtttccctggagcaaggcagtgccactgtgaactatgtgccatcggttttgagcccacaacaggtttgtcatcaaattggggacatgggcttcgaggccagcattgcagaaggaaaggcagcctcctggccctcaaggtccttgcctgcccaggaggctgtggtcaagctccgggtagaaggcatgacctgccagtcctgtgtcagctccattgaaggcaaggtccggaaactgcaaggagtagtgagagtcaaagtctcactcagcaaccaagaggccgtcatcacctatcagccttatctcattcagcccgaagacctcagggaccatgtaaacgacatgggatttgaggctgccatcaagaacaaagtggctcccttaagcctgggaccaattgatattgagcggttacaaagcacttacccaaagagacctttcacttctaaccagaattttaataattcagagaccttggggcaccaaggaaaccatgtggtcaccctccaactgagaatagatggaatgcactgtacatcttgcatcttgaatattgaagaaaatattggccagctcccagggattcaaagtattcaagtgtccttggagaacaaaactgcccaagtacagtatgacccttcttgtaccagcccagtgtctctgcagagggctatcgaagcacttccacctgggaactttaaagtttctcttcctgatggagcagaagggtgtgggacagagcacaggccttccggttctcattcccttggcttctcccagagaaaccaggcgcagggcacgtgcagtaccgctgtgattgccattgctggcatgacctgtgcgtcctgtgtccattccattgaaggcatgatctcccagcgggaaggggtgcagcaaatatcggtctctttggccgaagggactggaacagttctttataatccctccgtaattagcccagaagaactcagcactgctatagaagacatgggatttgaggcttcagtcatttctgaaaactgttccaccaactctcttggaaaccacagtgctgggaattccatggtgcaaactacaggtggtgtacctgcgtctgtgcaggaagtggctccccatgctggggggctccctaccaatcacaccctggacatcttggcaaagtccccacaatcaaccagagcagtggcactgcagaagtgcttcttacagatcaaaggcatgacctgtgcatcctgtgtatctaccatagaaaggaatctgcagaataaagctggtattctctccgtgttggttgccttgatggcaggaaaggcagagatcaaatatgatccggaggtcatccagccactcgagatagctcagctgatccaggacctgggctttgaggcagcagtcatggaggactacgcaggctctgatggcagcattgagctgattatcacagggatgacctgcgcgtcctgtgtccacaacatagagtccaaactcacgaggacagacggcatcacctatgcctccgttgcccttgccaccagcaaagcccttgttaagtttgatccagaaattatcggtccacgggatattatcaaaattattgaggaaattggctttcatgcttccctggcccagagaaaccccaacgctcatcacttggaccacaagatggaaataaagcagtggaagaagtccttcctgtgcagcctggtgtttggcatccctgtcatggctttaatgatctatatgctgatacccagcaacgagccccacgagtctatggtcctggaccacaacatcattccaggactgtccattctaaatctcatcttctttatcctgtgcaccttcgtccagctcctcggtgggtggtacttctatgttcaggcctataaatctctgagacacaggtcagccaacatggatgtgctcatcgtcctggccacaagcattgcctatgtctattctctggtcatcctggtggttgctgtggccgagaaggcggagaggagccctgtgacattctttgacacgccccccatgctcttcgtgttcgttgccctggggcggtggctggaacacttggcaaagagcaaaacctcagaagcccttgccaaactcatgtctctccaagctgcagaagccactgttgtgacccttggtgaggacaatttaatcatcagggaggagcaagtccccatggagctggtgcagcggggcgatatcgtcaaggtggtccctgggggaaagttcccagtggacgggaaagtcctggaaggcaataccatggctgatgagtcactcatcacaggagaagccatgccagtcactaagaaacccggaagcactgtaattgcagggtctataaatgcacatggcgctgtgctcattaaagccacccacgtgggcaatgacaccactttggctcagattgtgaaattggtggaagaggctcagatgtcaaaggcacccattcagcaactggctgaccggtttagtggatattttgtcccatttatcatcatcatgtcaactttgacgttggtggtatggattgtaatcggttttatcgattttgatgttgttcagaagtactttcctaaccccaacaagcacatctcccagacagaggtgatcatccggtttgcgttccagacgtccatcacagtgctgtgcatcgcctgcccctgttccctggggctggccacgcccacagctgtcatggtgggcactggggtggctgcgcagaatggcatcctcatcaagggtggcaagcccctggagatggcgcacaagataaagactgtgatgtttgacaagactggcaccattacccatggggtccccagggtcatgcgggtgctcctgctgggggatgtggccaaactgcccctcaggaaggttctggctgtggtggggactgcagaggccagcagtgaacaccccttgggcgtggcagtcaccaaatattgtaaagaggaacttggaacagagaccttgggatactgcacagacttccaggcggtgccaggctgtggaatcgggtgcaaagtcagcatcatggaaggtatcctggcccacagtgggagccctctgagtgccagtcatctgaatgaggctggcagccttcccgaagaaaaagatgcagccccccagaccttctctgtgctgattggaaaccgtgaatggctgaggcgcaacggcttaaccatttccagtgatgtcagtgacgctatgacagaccacgagatgaaaggacagacagctatcctggtggctattgacggtgtgctctgtgggatgattgccatcgcagatgctgtcaagcaggaggccgccctggctgtgcacacgctgcagagcatgggtatagatgtggttctgattacgggggacaaccggaaaacagccagagccattgccacccaggttggcatcaacaaagtctttgcagaggtgctgccttcccacaaggtggccaaggtccaggagcttcagaaccaagggaagaaagttgccatggtgggagatggggtcaacgactccccggccctggcccaggcagacatgggtgtcgccattggcaccggcacagatgtggccatcgaggcagccgacgtcgtcctcattagaaatgatttgctggacttggtggctagcattcacctttccaagaggactgtccggaggatacgcatcaacctggtcctggcactgatttataacctggttgggatacccattgcggcaggtgtcttcatgcccgtcggcattgtgctgcagccctggatgggctcggcggccatggcagcctcctccgtgtctgtggtgctctcatccctgcagctcaagtgctataagaagcctgacctggagaggtacgaggcacagctgcatggccgcatgaagcccttgacggcatcccaggtcagtgtgcacatcggcatggatgacaggcggagggactcccccagggccacgccgtgggaccaggtcagctatgtcagccaggtgtcactgtcctccctgacgtccaacaagccatctcggcagagcgctgcagtggacgatggtggggacaagtggtctctgctcctgaatgacagggatgaggagcagtacatctgatggctccaggtgggcaggcccagggcagggacttgcctccactcgccacaagccaagcaggacagcccgcagcaggatgggcagagctagcctccagctttggggacttccacaccctggacgtgtccagtcaccccgccctgcgatgcatggtcttgtctcagtggagctggctttggcctggagaggatgttactgcctgcttcctggcctcactgggctgtcagcatgggctttgtcttggactctgatccttgcctgtgggactgtagaagatgagaggtgtgtcaccctcctcacagacctctcctggaatatttagggcgactactgtgaaatggagaacagtttcatcaggaccaaaaaacctcactgggcctttccagagaaccacagacctcactgtcaggctctttctgatgacgcctgcgtgcctcatgtttctgagaccacagtttacctcaagtgtgtctgttgctttctgcttgcacagtctgtaccttttctgtcctgtgtgctttcactggggaccccgtgtgaccctgcctatcacctaggaggggaggaccaatgtccttgtggtccctgctgctgctctcaggcgcttctccaaagctctggagtgtgcatttcagcctgaatctgcttcctggcatgcacatccccagccagggagcttgccacatcctccttcaaatcgaggcgagttctttcttgcttaagcgccccttctctgtagagtgggggcttctcaatagagtgttgttgctgaccagctggagtgagggtctcagagcctgacctgaatgtctagcctcggcttcctgtggagtctaggtgctcacagttcagggcgtccttctgtgtccctgcccagcctgtggtgctcaaaacaggtgccccatgatagatatatgtgtgcaggagcctccctgcatggccccaggagcttcgttttcacagtcttctgtgtgattgtcacctcgtggggtccggtagagcattcatgtcactagtgtctggcgttgtatgggttggaggaagcagtgccgcccaaataggaggaaagcacagcctccctgagcctgccttctgcatgctgcccaggggcctcaggaaaggagtggccacagctccactgtttacctgacagtggctctcagagcagcagaaggggtccagttattgactctgaagttggtggcaattgacagaaccccttggagtgaactagtagagttggattaaattctgggtgaaactcctgtctcccacacaaaatagttgtagttatttttttgagtgtccattacttaccagaggaagtgttagcagcacttttgatagattacctctaatcttccagcaaaccagcaagatagctgtgactgtccacattttacaggcaaggaaacaggctccgagaagctgaggacctcgcccagggtgacatagccagtggacgtgccgtgtctgtcggctctgaaggctttactctaattgtccttttgccttgaatagaaatttgcctcataagaataaaaaagaaaaaagtctttgcctcctggaagaacaaatctaccacgtgatcaagtaattatttcaactcagaatgcagttgactcaggaggtcctctgaccttttccttggatggttagtttcgccttttacatatagtttttgtggggttttattttatgaaatccaagcacgccgttcgttgtgttttcgttgttttcagcccctgctccagccccagcggattcctgctttctgtccgtaattgcgtcctctctttatgcttgcttggggaatgtcgtttcctgaccaggctgatctttatctaaaaaatctgtgttgatttttaaaacttttaggaccataaacattgtgttcatctatagacttggaaatatttatataattttatagaaaataaccttttagatggtcaaagtataaggaattttttttgtcagataaccatttctacttcaaaagcattccatgcaatattagaataaagttcctgtcattcctctaaaaa
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DBCLS
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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