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2024-03-29 11:34:26, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_032294546            7574 bp    mRNA    linear   PRI 02-FEB-2020
DEFINITION  PREDICTED: Sapajus apella ATPase copper transporting beta (ATP7B),
            transcript variant X2, mRNA.
ACCESSION   XM_032294546
VERSION     XM_032294546.1
DBLINK      BioProject: PRJNA599380
KEYWORDS    RefSeq.
SOURCE      Sapajus apella (tufted capuchin)
  ORGANISM  Sapajus apella
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Platyrrhini; Cebidae; Cebinae; Sapajus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_022436972.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Sapajus apella Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7574
                     /organism="Sapajus apella"
                     /mol_type="mRNA"
                     /isolate="SASKATOON/1434"
                     /db_xref="taxon:9515"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
     gene            1..7574
                     /gene="ATP7B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 76 ESTs, 23 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 17 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116562360"
     CDS             1093..5526
                     /gene="ATP7B"
                     /codon_start=1
                     /product="copper-transporting ATPase 2 isoform X2"
                     /protein_id="XP_032150437.1"
                     /db_xref="GeneID:116562360"
                     /translation="
MTTSHRQNYEVPLKVNLLLFQPFPSCPLAQPQILSKLSLPNRAWEPAMKKSFAFDNVGYEGGLDGLGPSSQVTTSTIKILGMTCQSCVKSIEDRISSLKGIVSVKVSLEQGSATVNYVPSVLSPQQVCHQIGDMGFEASIAEGKAASWPSRSLPAQEAVVKLRVEGMTCQSCVSSIEGKVRKLQGVVRVKVSLSNQEAVITYQPYLIQPEDLRDHVNDMGFEAAIKNKVAPLSLGPIDIERLQSTYPKRPFTSNQNFNNSETLGHQGNHVVTLQLRIDGMHCTSCILNIEENIGQLPGIQSIQVSLENKTAQVQYDPSCTSPVSLQRAIEALPPGNFKVSLPDGAEGCGTEHRPSGSHSLGFSQRNQAQGTCSTAVIAIAGMTCASCVHSIEGMISQREGVQQISVSLAEGTGTVLYNPSVISPEELSTAIEDMGFEASVISENCSTNSLGNHSAGNSMVQTTGGVPASVQEVAPHAGGLPTNHTLDILAKSPQSTRAVALQKCFLQIKGMTCASCVSTIERNLQNKAGILSVLVALMAGKAEIKYDPEVIQPLEIAQLIQDLGFEAAVMEDYAGSDGSIELIITGMTCASCVHNIESKLTRTDGITYASVALATSKALVKFDPEIIGPRDIIKIIEEIGFHASLAQRNPNAHHLDHKMEIKQWKKSFLCSLVFGIPVMALMIYMLIPSNEPHESMVLDHNIIPGLSILNLIFFILCTFVQLLGGWYFYVQAYKSLRHRSANMDVLIVLATSIAYVYSLVILVVAVAEKAERSPVTFFDTPPMLFVFVALGRWLEHLAKSKTSEALAKLMSLQAAEATVVTLGEDNLIIREEQVPMELVQRGDIVKVVPGGKFPVDGKVLEGNTMADESLITGEAMPVTKKPGSTVIAGSINAHGAVLIKATHVGNDTTLAQIVKLVEEAQMSKAPIQQLADRFSGYFVPFIIIMSTLTLVVWIVIGFIDFDVVQKYFPNPNKHISQTEVIIRFAFQTSITVLCIACPCSLGLATPTAVMVGTGVAAQNGILIKGGKPLEMAHKIKTVMFDKTGTITHGVPRVMRVLLLGDVAKLPLRKVLAVVGTAEASSEHPLGVAVTKYCKEELGTETLGYCTDFQAVPGCGIGCKVSIMEGILAHSGSPLSASHLNEAGSLPEEKDAAPQTFSVLIGNREWLRRNGLTISSDVSDAMTDHEMKGQTAILVAIDGVLCGMIAIADAVKQEAALAVHTLQSMGIDVVLITGDNRKTARAIATQVGINKVFAEVLPSHKVAKVQELQNQGKKVAMVGDGVNDSPALAQADMGVAIGTGTDVAIEAADVVLIRNDLLDLVASIHLSKRTVRRIRINLVLALIYNLVGIPIAAGVFMPVGIVLQPWMGSAAMAASSVSVVLSSLQLKCYKKPDLERYEAQLHGRMKPLTASQVSVHIGMDDRRRDSPRATPWDQVSYVSQVSLSSLTSNKPSRQSAAVDDGGDKWSLLLNDRDEEQYI"
     misc_feature    1318..1509
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(1336..1344,1351..1353)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1573..1764
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(1591..1599,1606..1608)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1912..2088
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(1930..1938,1945..1947)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    2218..2409
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(2236..2244,2251..2253)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    2608..2796
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(2623..2631,2638..2640)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    2833..3024
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(2851..2859,2866..2868)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    3088..5190
                     /gene="ATP7B"
                     /note="P-type heavy metal-transporting ATPase, similar to
                     human copper-transporting ATPases, ATP7A and ATP7B;
                     Region: P-type_ATPase_Cu-like; cd02094"
                     /db_xref="CDD:319783"
     misc_feature    order(4081..4083,4087..4089,5119..5121)
                     /gene="ATP7B"
                     /note="putative Cu binding site [ion binding]; other site"
                     /db_xref="CDD:319783"
     misc_feature    order(4213..4221,4423..4425,4570..4578,4666..4668,
                     4786..4794,4852..4854,4861..4863,4870..4872,4927..4929,
                     4936..4938)
                     /gene="ATP7B"
                     /note="putative ATP binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:319783"
     misc_feature    4213..4233
                     /gene="ATP7B"
                     /note="P-type ATPase signature motif; other site"
                     /db_xref="CDD:319783"
     misc_feature    4213..4215
                     /gene="ATP7B"
                     /note="phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:319783"
ORIGIN      
tggctatgttaatttattcttgaagaaatacaaatattttttataaatttggtgtagcctaagtatacagcgtttataaaactgacagtagcgcaatgtcctaagcctttacgtctactcgccgctcattcgcccactcacccagagcaacttccagtcctgcaagctccattcatgataagtgccccatacaggtacaccattttttaatcttttatatttttactgaaccttttctgtgttcagatatgtttagatacacaagtacttacccttgttttacagttgcctacagtattcagttcagtaacacactgtacaggtgtgtggcctgggagcaacaggccataccatacagcccaggtgtgtagtaggctacatcatccaggtgtgtgtcagtgactctatgatggtcacacaatgacgacatcacctgatgactcatttctcagaatatatcagcatccttaaacaacatcgttacacattcacatatttactcaattcagcaatctcttttgaatggctgtcccaaaaattacctaattattcccttttttctcttagagaatgttacagtgaatatttaaaattctatgtgattattaatcccaaacctttgtagatacacaaatcaacatttatgtagtctgtattttagaaattatttaaacatttatgttgttaaactgctcaaaagccagttggcaaggtctgcattttatgcatagaaaaaaggaggagatcatagcatgtaatggagacacatctgaagacaggcaggattgtgtacaagtagagagaaatgtactttttaaaagatatcatgtataaagaggcctgttcccaaatttctgaagcatataatagttctgatgtaaaaactacatctagttaagagagctgtaggccaggagcctgtgaaaggaagattttgcttgtttatagaatgactgagatcacattattctgtgtagaaaccaggaaataatacttgtactatggtgcgttaagaaaataagtcctttaattcagtgatgcacctgaaatttcaggtgatgactgcagcttccctgaacactaaggagggcgatgacaacgagtcacaggcagaactatgaagttcctctgaaagtcaacctcctgctcttccagcctttcccctcctgccccttggctcagccacagatcttatctaaactttctttgcctaaccgtgcctgggaaccagcaatgaagaagagctttgcttttgacaatgttggctatgaaggtggtctggatggcctcggcccttcttctcaggtgaccaccagcacaatcaagatcttgggcatgacttgccagtcttgtgtgaagtccattgaggacaggatttccagtttgaaaggcatcgtgagcgttaaggtttccctggagcaaggcagtgccactgtgaactatgtgccatcggttttgagcccacaacaggtttgtcatcaaattggggacatgggcttcgaggccagcattgcagaaggaaaggcagcctcctggccctcaaggtccttgcctgcccaggaggctgtggtcaagctccgggtagaaggcatgacctgccagtcctgtgtcagctccattgaaggcaaggtccggaaactgcaaggagtagtgagagtcaaagtctcactcagcaaccaagaggccgtcatcacctatcagccttatctcattcagcccgaagacctcagggaccatgtaaacgacatgggatttgaggctgccatcaagaacaaagtggctcccttaagcctgggaccaattgatattgagcggttacaaagcacttacccaaagagacctttcacttctaaccagaattttaataattcagagaccttggggcaccaaggaaaccatgtggtcaccctccaactgagaatagatggaatgcactgtacatcttgcatcttgaatattgaagaaaatattggccagctcccagggattcaaagtattcaagtgtccttggagaacaaaactgcccaagtacagtatgacccttcttgtaccagcccagtgtctctgcagagggctatcgaagcacttccacctgggaactttaaagtttctcttcctgatggagcagaagggtgtgggacagagcacaggccttccggttctcattcccttggcttctcccagagaaaccaggcgcagggcacgtgcagtaccgctgtgattgccattgctggcatgacctgtgcgtcctgtgtccattccattgaaggcatgatctcccagcgggaaggggtgcagcaaatatcggtctctttggccgaagggactggaacagttctttataatccctccgtaattagcccagaagaactcagcactgctatagaagacatgggatttgaggcttcagtcatttctgaaaactgttccaccaactctcttggaaaccacagtgctgggaattccatggtgcaaactacaggtggtgtacctgcgtctgtgcaggaagtggctccccatgctggggggctccctaccaatcacaccctggacatcttggcaaagtccccacaatcaaccagagcagtggcactgcagaagtgcttcttacagatcaaaggcatgacctgtgcatcctgtgtatctaccatagaaaggaatctgcagaataaagctggtattctctccgtgttggttgccttgatggcaggaaaggcagagatcaaatatgatccggaggtcatccagccactcgagatagctcagctgatccaggacctgggctttgaggcagcagtcatggaggactacgcaggctctgatggcagcattgagctgattatcacagggatgacctgcgcgtcctgtgtccacaacatagagtccaaactcacgaggacagacggcatcacctatgcctccgttgcccttgccaccagcaaagcccttgttaagtttgatccagaaattatcggtccacgggatattatcaaaattattgaggaaattggctttcatgcttccctggcccagagaaaccccaacgctcatcacttggaccacaagatggaaataaagcagtggaagaagtccttcctgtgcagcctggtgtttggcatccctgtcatggctttaatgatctatatgctgatacccagcaacgagccccacgagtctatggtcctggaccacaacatcattccaggactgtccattctaaatctcatcttctttatcctgtgcaccttcgtccagctcctcggtgggtggtacttctatgttcaggcctataaatctctgagacacaggtcagccaacatggatgtgctcatcgtcctggccacaagcattgcctatgtctattctctggtcatcctggtggttgctgtggccgagaaggcggagaggagccctgtgacattctttgacacgccccccatgctcttcgtgttcgttgccctggggcggtggctggaacacttggcaaagagcaaaacctcagaagcccttgccaaactcatgtctctccaagctgcagaagccactgttgtgacccttggtgaggacaatttaatcatcagggaggagcaagtccccatggagctggtgcagcggggcgatatcgtcaaggtggtccctgggggaaagttcccagtggacgggaaagtcctggaaggcaataccatggctgatgagtcactcatcacaggagaagccatgccagtcactaagaaacccggaagcactgtaattgcagggtctataaatgcacatggcgctgtgctcattaaagccacccacgtgggcaatgacaccactttggctcagattgtgaaattggtggaagaggctcagatgtcaaaggcacccattcagcaactggctgaccggtttagtggatattttgtcccatttatcatcatcatgtcaactttgacgttggtggtatggattgtaatcggttttatcgattttgatgttgttcagaagtactttcctaaccccaacaagcacatctcccagacagaggtgatcatccggtttgcgttccagacgtccatcacagtgctgtgcatcgcctgcccctgttccctggggctggccacgcccacagctgtcatggtgggcactggggtggctgcgcagaatggcatcctcatcaagggtggcaagcccctggagatggcgcacaagataaagactgtgatgtttgacaagactggcaccattacccatggggtccccagggtcatgcgggtgctcctgctgggggatgtggccaaactgcccctcaggaaggttctggctgtggtggggactgcagaggccagcagtgaacaccccttgggcgtggcagtcaccaaatattgtaaagaggaacttggaacagagaccttgggatactgcacagacttccaggcggtgccaggctgtggaatcgggtgcaaagtcagcatcatggaaggtatcctggcccacagtgggagccctctgagtgccagtcatctgaatgaggctggcagccttcccgaagaaaaagatgcagccccccagaccttctctgtgctgattggaaaccgtgaatggctgaggcgcaacggcttaaccatttccagtgatgtcagtgacgctatgacagaccacgagatgaaaggacagacagctatcctggtggctattgacggtgtgctctgtgggatgattgccatcgcagatgctgtcaagcaggaggccgccctggctgtgcacacgctgcagagcatgggtatagatgtggttctgattacgggggacaaccggaaaacagccagagccattgccacccaggttggcatcaacaaagtctttgcagaggtgctgccttcccacaaggtggccaaggtccaggagcttcagaaccaagggaagaaagttgccatggtgggagatggggtcaacgactccccggccctggcccaggcagacatgggtgtcgccattggcaccggcacagatgtggccatcgaggcagccgacgtcgtcctcattagaaatgatttgctggacttggtggctagcattcacctttccaagaggactgtccggaggatacgcatcaacctggtcctggcactgatttataacctggttgggatacccattgcggcaggtgtcttcatgcccgtcggcattgtgctgcagccctggatgggctcggcggccatggcagcctcctccgtgtctgtggtgctctcatccctgcagctcaagtgctataagaagcctgacctggagaggtacgaggcacagctgcatggccgcatgaagcccttgacggcatcccaggtcagtgtgcacatcggcatggatgacaggcggagggactcccccagggccacgccgtgggaccaggtcagctatgtcagccaggtgtcactgtcctccctgacgtccaacaagccatctcggcagagcgctgcagtggacgatggtggggacaagtggtctctgctcctgaatgacagggatgaggagcagtacatctgatggctccaggtgggcaggcccagggcagggacttgcctccactcgccacaagccaagcaggacagcccgcagcaggatgggcagagctagcctccagctttggggacttccacaccctggacgtgtccagtcaccccgccctgcgatgcatggtcttgtctcagtggagctggctttggcctggagaggatgttactgcctgcttcctggcctcactgggctgtcagcatgggctttgtcttggactctgatccttgcctgtgggactgtagaagatgagaggtgtgtcaccctcctcacagacctctcctggaatatttagggcgactactgtgaaatggagaacagtttcatcaggaccaaaaaacctcactgggcctttccagagaaccacagacctcactgtcaggctctttctgatgacgcctgcgtgcctcatgtttctgagaccacagtttacctcaagtgtgtctgttgctttctgcttgcacagtctgtaccttttctgtcctgtgtgctttcactggggaccccgtgtgaccctgcctatcacctaggaggggaggaccaatgtccttgtggtccctgctgctgctctcaggcgcttctccaaagctctggagtgtgcatttcagcctgaatctgcttcctggcatgcacatccccagccagggagcttgccacatcctccttcaaatcgaggcgagttctttcttgcttaagcgccccttctctgtagagtgggggcttctcaatagagtgttgttgctgaccagctggagtgagggtctcagagcctgacctgaatgtctagcctcggcttcctgtggagtctaggtgctcacagttcagggcgtccttctgtgtccctgcccagcctgtggtgctcaaaacaggtgccccatgatagatatatgtgtgcaggagcctccctgcatggccccaggagcttcgttttcacagtcttctgtgtgattgtcacctcgtggggtccggtagagcattcatgtcactagtgtctggcgttgtatgggttggaggaagcagtgccgcccaaataggaggaaagcacagcctccctgagcctgccttctgcatgctgcccaggggcctcaggaaaggagtggccacagctccactgtttacctgacagtggctctcagagcagcagaaggggtccagttattgactctgaagttggtggcaattgacagaaccccttggagtgaactagtagagttggattaaattctgggtgaaactcctgtctcccacacaaaatagttgtagttatttttttgagtgtccattacttaccagaggaagtgttagcagcacttttgatagattacctctaatcttccagcaaaccagcaagatagctgtgactgtccacattttacaggcaaggaaacaggctccgagaagctgaggacctcgcccagggtgacatagccagtggacgtgccgtgtctgtcggctctgaaggctttactctaattgtccttttgccttgaatagaaatttgcctcataagaataaaaaagaaaaaagtctttgcctcctggaagaacaaatctaccacgtgatcaagtaattatttcaactcagaatgcagttgactcaggaggtcctctgaccttttccttggatggttagtttcgccttttacatatagtttttgtggggttttattttatgaaatccaagcacgccgttcgttgtgttttcgttgttttcagcccctgctccagccccagcggattcctgctttctgtccgtaattgcgtcctctctttatgcttgcttggggaatgtcgtttcctgaccaggctgatctttatctaaaaaatctgtgttgatttttaaaacttttaggaccataaacattgtgttcatctatagacttggaaatatttatataattttatagaaaataaccttttagatggtcaaagtataaggaattttttttgtcagataaccatttctacttcaaaagcattccatgcaatattagaataaagttcctgtcattcctctaaaaa
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]