2024-03-29 11:34:26, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_032294546 7574 bp mRNA linear PRI 02-FEB-2020 DEFINITION PREDICTED: Sapajus apella ATPase copper transporting beta (ATP7B), transcript variant X2, mRNA. ACCESSION XM_032294546 VERSION XM_032294546.1 DBLINK BioProject: PRJNA599380 KEYWORDS RefSeq. SOURCE Sapajus apella (tufted capuchin) ORGANISM Sapajus apella Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Cebinae; Sapajus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_022436972.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Sapajus apella Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7574 /organism="Sapajus apella" /mol_type="mRNA" /isolate="SASKATOON/1434" /db_xref="taxon:9515" /chromosome="Unknown" /sex="female" /tissue_type="blood" /dev_stage="adult" gene 1..7574 /gene="ATP7B" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 76 ESTs, 23 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns" /db_xref="GeneID:116562360" CDS 1093..5526 /gene="ATP7B" /codon_start=1 /product="copper-transporting ATPase 2 isoform X2" /protein_id="XP_032150437.1" /db_xref="GeneID:116562360" /translation="
MTTSHRQNYEVPLKVNLLLFQPFPSCPLAQPQILSKLSLPNRAWEPAMKKSFAFDNVGYEGGLDGLGPSSQVTTSTIKILGMTCQSCVKSIEDRISSLKGIVSVKVSLEQGSATVNYVPSVLSPQQVCHQIGDMGFEASIAEGKAASWPSRSLPAQEAVVKLRVEGMTCQSCVSSIEGKVRKLQGVVRVKVSLSNQEAVITYQPYLIQPEDLRDHVNDMGFEAAIKNKVAPLSLGPIDIERLQSTYPKRPFTSNQNFNNSETLGHQGNHVVTLQLRIDGMHCTSCILNIEENIGQLPGIQSIQVSLENKTAQVQYDPSCTSPVSLQRAIEALPPGNFKVSLPDGAEGCGTEHRPSGSHSLGFSQRNQAQGTCSTAVIAIAGMTCASCVHSIEGMISQREGVQQISVSLAEGTGTVLYNPSVISPEELSTAIEDMGFEASVISENCSTNSLGNHSAGNSMVQTTGGVPASVQEVAPHAGGLPTNHTLDILAKSPQSTRAVALQKCFLQIKGMTCASCVSTIERNLQNKAGILSVLVALMAGKAEIKYDPEVIQPLEIAQLIQDLGFEAAVMEDYAGSDGSIELIITGMTCASCVHNIESKLTRTDGITYASVALATSKALVKFDPEIIGPRDIIKIIEEIGFHASLAQRNPNAHHLDHKMEIKQWKKSFLCSLVFGIPVMALMIYMLIPSNEPHESMVLDHNIIPGLSILNLIFFILCTFVQLLGGWYFYVQAYKSLRHRSANMDVLIVLATSIAYVYSLVILVVAVAEKAERSPVTFFDTPPMLFVFVALGRWLEHLAKSKTSEALAKLMSLQAAEATVVTLGEDNLIIREEQVPMELVQRGDIVKVVPGGKFPVDGKVLEGNTMADESLITGEAMPVTKKPGSTVIAGSINAHGAVLIKATHVGNDTTLAQIVKLVEEAQMSKAPIQQLADRFSGYFVPFIIIMSTLTLVVWIVIGFIDFDVVQKYFPNPNKHISQTEVIIRFAFQTSITVLCIACPCSLGLATPTAVMVGTGVAAQNGILIKGGKPLEMAHKIKTVMFDKTGTITHGVPRVMRVLLLGDVAKLPLRKVLAVVGTAEASSEHPLGVAVTKYCKEELGTETLGYCTDFQAVPGCGIGCKVSIMEGILAHSGSPLSASHLNEAGSLPEEKDAAPQTFSVLIGNREWLRRNGLTISSDVSDAMTDHEMKGQTAILVAIDGVLCGMIAIADAVKQEAALAVHTLQSMGIDVVLITGDNRKTARAIATQVGINKVFAEVLPSHKVAKVQELQNQGKKVAMVGDGVNDSPALAQADMGVAIGTGTDVAIEAADVVLIRNDLLDLVASIHLSKRTVRRIRINLVLALIYNLVGIPIAAGVFMPVGIVLQPWMGSAAMAASSVSVVLSSLQLKCYKKPDLERYEAQLHGRMKPLTASQVSVHIGMDDRRRDSPRATPWDQVSYVSQVSLSSLTSNKPSRQSAAVDDGGDKWSLLLNDRDEEQYI"
misc_feature 1318..1509 /gene="ATP7B" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(1336..1344,1351..1353) /gene="ATP7B" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1573..1764 /gene="ATP7B" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(1591..1599,1606..1608) /gene="ATP7B" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1912..2088 /gene="ATP7B" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(1930..1938,1945..1947) /gene="ATP7B" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 2218..2409 /gene="ATP7B" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(2236..2244,2251..2253) /gene="ATP7B" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 2608..2796 /gene="ATP7B" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(2623..2631,2638..2640) /gene="ATP7B" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 2833..3024 /gene="ATP7B" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(2851..2859,2866..2868) /gene="ATP7B" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 3088..5190 /gene="ATP7B" /note="P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B; Region: P-type_ATPase_Cu-like; cd02094" /db_xref="CDD:319783" misc_feature order(4081..4083,4087..4089,5119..5121) /gene="ATP7B" /note="putative Cu binding site [ion binding]; other site" /db_xref="CDD:319783" misc_feature order(4213..4221,4423..4425,4570..4578,4666..4668, 4786..4794,4852..4854,4861..4863,4870..4872,4927..4929, 4936..4938) /gene="ATP7B" /note="putative ATP binding site [chemical binding]; other site" /db_xref="CDD:319783" misc_feature 4213..4233 /gene="ATP7B" /note="P-type ATPase signature motif; other site" /db_xref="CDD:319783" misc_feature 4213..4215 /gene="ATP7B" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:319783" ORIGIN
tggctatgttaatttattcttgaagaaatacaaatattttttataaatttggtgtagcctaagtatacagcgtttataaaactgacagtagcgcaatgtcctaagcctttacgtctactcgccgctcattcgcccactcacccagagcaacttccagtcctgcaagctccattcatgataagtgccccatacaggtacaccattttttaatcttttatatttttactgaaccttttctgtgttcagatatgtttagatacacaagtacttacccttgttttacagttgcctacagtattcagttcagtaacacactgtacaggtgtgtggcctgggagcaacaggccataccatacagcccaggtgtgtagtaggctacatcatccaggtgtgtgtcagtgactctatgatggtcacacaatgacgacatcacctgatgactcatttctcagaatatatcagcatccttaaacaacatcgttacacattcacatatttactcaattcagcaatctcttttgaatggctgtcccaaaaattacctaattattcccttttttctcttagagaatgttacagtgaatatttaaaattctatgtgattattaatcccaaacctttgtagatacacaaatcaacatttatgtagtctgtattttagaaattatttaaacatttatgttgttaaactgctcaaaagccagttggcaaggtctgcattttatgcatagaaaaaaggaggagatcatagcatgtaatggagacacatctgaagacaggcaggattgtgtacaagtagagagaaatgtactttttaaaagatatcatgtataaagaggcctgttcccaaatttctgaagcatataatagttctgatgtaaaaactacatctagttaagagagctgtaggccaggagcctgtgaaaggaagattttgcttgtttatagaatgactgagatcacattattctgtgtagaaaccaggaaataatacttgtactatggtgcgttaagaaaataagtcctttaattcagtgatgcacctgaaatttcaggtgatgactgcagcttccctgaacactaaggagggcgatgacaacgagtcacaggcagaactatgaagttcctctgaaagtcaacctcctgctcttccagcctttcccctcctgccccttggctcagccacagatcttatctaaactttctttgcctaaccgtgcctgggaaccagcaatgaagaagagctttgcttttgacaatgttggctatgaaggtggtctggatggcctcggcccttcttctcaggtgaccaccagcacaatcaagatcttgggcatgacttgccagtcttgtgtgaagtccattgaggacaggatttccagtttgaaaggcatcgtgagcgttaaggtttccctggagcaaggcagtgccactgtgaactatgtgccatcggttttgagcccacaacaggtttgtcatcaaattggggacatgggcttcgaggccagcattgcagaaggaaaggcagcctcctggccctcaaggtccttgcctgcccaggaggctgtggtcaagctccgggtagaaggcatgacctgccagtcctgtgtcagctccattgaaggcaaggtccggaaactgcaaggagtagtgagagtcaaagtctcactcagcaaccaagaggccgtcatcacctatcagccttatctcattcagcccgaagacctcagggaccatgtaaacgacatgggatttgaggctgccatcaagaacaaagtggctcccttaagcctgggaccaattgatattgagcggttacaaagcacttacccaaagagacctttcacttctaaccagaattttaataattcagagaccttggggcaccaaggaaaccatgtggtcaccctccaactgagaatagatggaatgcactgtacatcttgcatcttgaatattgaagaaaatattggccagctcccagggattcaaagtattcaagtgtccttggagaacaaaactgcccaagtacagtatgacccttcttgtaccagcccagtgtctctgcagagggctatcgaagcacttccacctgggaactttaaagtttctcttcctgatggagcagaagggtgtgggacagagcacaggccttccggttctcattcccttggcttctcccagagaaaccaggcgcagggcacgtgcagtaccgctgtgattgccattgctggcatgacctgtgcgtcctgtgtccattccattgaaggcatgatctcccagcgggaaggggtgcagcaaatatcggtctctttggccgaagggactggaacagttctttataatccctccgtaattagcccagaagaactcagcactgctatagaagacatgggatttgaggcttcagtcatttctgaaaactgttccaccaactctcttggaaaccacagtgctgggaattccatggtgcaaactacaggtggtgtacctgcgtctgtgcaggaagtggctccccatgctggggggctccctaccaatcacaccctggacatcttggcaaagtccccacaatcaaccagagcagtggcactgcagaagtgcttcttacagatcaaaggcatgacctgtgcatcctgtgtatctaccatagaaaggaatctgcagaataaagctggtattctctccgtgttggttgccttgatggcaggaaaggcagagatcaaatatgatccggaggtcatccagccactcgagatagctcagctgatccaggacctgggctttgaggcagcagtcatggaggactacgcaggctctgatggcagcattgagctgattatcacagggatgacctgcgcgtcctgtgtccacaacatagagtccaaactcacgaggacagacggcatcacctatgcctccgttgcccttgccaccagcaaagcccttgttaagtttgatccagaaattatcggtccacgggatattatcaaaattattgaggaaattggctttcatgcttccctggcccagagaaaccccaacgctcatcacttggaccacaagatggaaataaagcagtggaagaagtccttcctgtgcagcctggtgtttggcatccctgtcatggctttaatgatctatatgctgatacccagcaacgagccccacgagtctatggtcctggaccacaacatcattccaggactgtccattctaaatctcatcttctttatcctgtgcaccttcgtccagctcctcggtgggtggtacttctatgttcaggcctataaatctctgagacacaggtcagccaacatggatgtgctcatcgtcctggccacaagcattgcctatgtctattctctggtcatcctggtggttgctgtggccgagaaggcggagaggagccctgtgacattctttgacacgccccccatgctcttcgtgttcgttgccctggggcggtggctggaacacttggcaaagagcaaaacctcagaagcccttgccaaactcatgtctctccaagctgcagaagccactgttgtgacccttggtgaggacaatttaatcatcagggaggagcaagtccccatggagctggtgcagcggggcgatatcgtcaaggtggtccctgggggaaagttcccagtggacgggaaagtcctggaaggcaataccatggctgatgagtcactcatcacaggagaagccatgccagtcactaagaaacccggaagcactgtaattgcagggtctataaatgcacatggcgctgtgctcattaaagccacccacgtgggcaatgacaccactttggctcagattgtgaaattggtggaagaggctcagatgtcaaaggcacccattcagcaactggctgaccggtttagtggatattttgtcccatttatcatcatcatgtcaactttgacgttggtggtatggattgtaatcggttttatcgattttgatgttgttcagaagtactttcctaaccccaacaagcacatctcccagacagaggtgatcatccggtttgcgttccagacgtccatcacagtgctgtgcatcgcctgcccctgttccctggggctggccacgcccacagctgtcatggtgggcactggggtggctgcgcagaatggcatcctcatcaagggtggcaagcccctggagatggcgcacaagataaagactgtgatgtttgacaagactggcaccattacccatggggtccccagggtcatgcgggtgctcctgctgggggatgtggccaaactgcccctcaggaaggttctggctgtggtggggactgcagaggccagcagtgaacaccccttgggcgtggcagtcaccaaatattgtaaagaggaacttggaacagagaccttgggatactgcacagacttccaggcggtgccaggctgtggaatcgggtgcaaagtcagcatcatggaaggtatcctggcccacagtgggagccctctgagtgccagtcatctgaatgaggctggcagccttcccgaagaaaaagatgcagccccccagaccttctctgtgctgattggaaaccgtgaatggctgaggcgcaacggcttaaccatttccagtgatgtcagtgacgctatgacagaccacgagatgaaaggacagacagctatcctggtggctattgacggtgtgctctgtgggatgattgccatcgcagatgctgtcaagcaggaggccgccctggctgtgcacacgctgcagagcatgggtatagatgtggttctgattacgggggacaaccggaaaacagccagagccattgccacccaggttggcatcaacaaagtctttgcagaggtgctgccttcccacaaggtggccaaggtccaggagcttcagaaccaagggaagaaagttgccatggtgggagatggggtcaacgactccccggccctggcccaggcagacatgggtgtcgccattggcaccggcacagatgtggccatcgaggcagccgacgtcgtcctcattagaaatgatttgctggacttggtggctagcattcacctttccaagaggactgtccggaggatacgcatcaacctggtcctggcactgatttataacctggttgggatacccattgcggcaggtgtcttcatgcccgtcggcattgtgctgcagccctggatgggctcggcggccatggcagcctcctccgtgtctgtggtgctctcatccctgcagctcaagtgctataagaagcctgacctggagaggtacgaggcacagctgcatggccgcatgaagcccttgacggcatcccaggtcagtgtgcacatcggcatggatgacaggcggagggactcccccagggccacgccgtgggaccaggtcagctatgtcagccaggtgtcactgtcctccctgacgtccaacaagccatctcggcagagcgctgcagtggacgatggtggggacaagtggtctctgctcctgaatgacagggatgaggagcagtacatctgatggctccaggtgggcaggcccagggcagggacttgcctccactcgccacaagccaagcaggacagcccgcagcaggatgggcagagctagcctccagctttggggacttccacaccctggacgtgtccagtcaccccgccctgcgatgcatggtcttgtctcagtggagctggctttggcctggagaggatgttactgcctgcttcctggcctcactgggctgtcagcatgggctttgtcttggactctgatccttgcctgtgggactgtagaagatgagaggtgtgtcaccctcctcacagacctctcctggaatatttagggcgactactgtgaaatggagaacagtttcatcaggaccaaaaaacctcactgggcctttccagagaaccacagacctcactgtcaggctctttctgatgacgcctgcgtgcctcatgtttctgagaccacagtttacctcaagtgtgtctgttgctttctgcttgcacagtctgtaccttttctgtcctgtgtgctttcactggggaccccgtgtgaccctgcctatcacctaggaggggaggaccaatgtccttgtggtccctgctgctgctctcaggcgcttctccaaagctctggagtgtgcatttcagcctgaatctgcttcctggcatgcacatccccagccagggagcttgccacatcctccttcaaatcgaggcgagttctttcttgcttaagcgccccttctctgtagagtgggggcttctcaatagagtgttgttgctgaccagctggagtgagggtctcagagcctgacctgaatgtctagcctcggcttcctgtggagtctaggtgctcacagttcagggcgtccttctgtgtccctgcccagcctgtggtgctcaaaacaggtgccccatgatagatatatgtgtgcaggagcctccctgcatggccccaggagcttcgttttcacagtcttctgtgtgattgtcacctcgtggggtccggtagagcattcatgtcactagtgtctggcgttgtatgggttggaggaagcagtgccgcccaaataggaggaaagcacagcctccctgagcctgccttctgcatgctgcccaggggcctcaggaaaggagtggccacagctccactgtttacctgacagtggctctcagagcagcagaaggggtccagttattgactctgaagttggtggcaattgacagaaccccttggagtgaactagtagagttggattaaattctgggtgaaactcctgtctcccacacaaaatagttgtagttatttttttgagtgtccattacttaccagaggaagtgttagcagcacttttgatagattacctctaatcttccagcaaaccagcaagatagctgtgactgtccacattttacaggcaaggaaacaggctccgagaagctgaggacctcgcccagggtgacatagccagtggacgtgccgtgtctgtcggctctgaaggctttactctaattgtccttttgccttgaatagaaatttgcctcataagaataaaaaagaaaaaagtctttgcctcctggaagaacaaatctaccacgtgatcaagtaattatttcaactcagaatgcagttgactcaggaggtcctctgaccttttccttggatggttagtttcgccttttacatatagtttttgtggggttttattttatgaaatccaagcacgccgttcgttgtgttttcgttgttttcagcccctgctccagccccagcggattcctgctttctgtccgtaattgcgtcctctctttatgcttgcttggggaatgtcgtttcctgaccaggctgatctttatctaaaaaatctgtgttgatttttaaaacttttaggaccataaacattgtgttcatctatagacttggaaatatttatataattttatagaaaataaccttttagatggtcaaagtataaggaattttttttgtcagataaccatttctacttcaaaagcattccatgcaatattagaataaagttcctgtcattcctctaaaaa
//
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@meso_cacase at
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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