LOCUS       XM_032180692            4599 bp    mRNA    linear   VRT 30-JAN-2020
DEFINITION  PREDICTED: Aythya fuligula testis and ovary specific PAZ domain
            containing 1 (TOPAZ1), mRNA.
ACCESSION   XM_032180692
VERSION     XM_032180692.1
DBLINK      BioProject: PRJNA602521
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Aythya fuligula (tufted duck)
  ORGANISM  Aythya fuligula
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes;
            Anatidae; Aythyinae; Aythya.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045560.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Aythya fuligula Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 51% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4599
                     /organism="Aythya fuligula"
                     /mol_type="mRNA"
                     /isolate="bAytFul2"
                     /db_xref="taxon:219594"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="lung (powdered)"
                     /dev_stage="adult"
                     /country="Sweden"
                     /lat_lon="59.8509 N 17.6300 E"
                     /collection_date="28-Aug-2017"
                     /collected_by="Patrik Ellstrom, Mahmoud Naguib, Josef
                     Jarhult"
     gene            1..4599
                     /gene="TOPAZ1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 10% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:116485392"
     CDS             1..4599
                     /gene="TOPAZ1"
                     /codon_start=1
                     /product="protein TOPAZ1"
                     /protein_id="XP_032036583.1"
                     /db_xref="GeneID:116485392"
                     /translation="

MELKLQIPTSEEELDSTESIIPCLPEAEVLQPRNSACSTGIKGIGSLMILKLQIPDLKKSLGNEESSLSEPQPWEVVDNPGKMNRCSLKGSEKPKEQGNKCLRKKSSTSLGKSKLQEPRKRGGSALVELHTKCLESKKRAVSLKKRDSLHVQGVSGQEQPTARGKLHKRCMIEQQQSSDAQKGADSLGESAQRKRKAACRDSTVEQSEVNRSTNTMQKESSPIKSSSLLNEEVKPQHKEGHLPCRQSRGSKFLSEKKMNVGRKRAKKMKISEMSAVQNVFTNMPDECTKCELKADVATSGSSAVLGQNHKEMTLSDSWDCTADLHTGNNTREAQEASVQSKNCTKSLAFEGGLKKTSRLSVVAKGEASSCEAAQQHSATSGSLRALTQAPGVSNCLKSMTDGKVNKANKKLRQFTCQRTLPMTGKNVWPRESCARTSEWVPKNHWSISEGNRLLSPVFEGSSDPSSVKAVGNSAVTENSRQLDLCTSLAEVKECADEAVDLNAKCPTSVETPESSSMDIDESCGMSNENVESPVDTVRSALAFNPDDMQEVKATLNFPAKPKNKNKGAVTKRSPCVTVQNNPSRSNKSRINFSPKAPVVNQALPDVKLVKALNTRNLTNFKIPLRRNKPESRKWECVSSSGRKACSPLELLDSASGSQRQKTDEETSVNPEQQSLPVVSDATSTASMKKNAGKVNRKDLHHDGSETLSKEMPPLPEHASSYPCPAPERQQESSPCGFSATDCGWKPNFPEHSGNAVDLPAALEIRDGDKSGVNHSQPKSDFFPDVLEAYKEDVLVIDVIQDDPDLFGASEEEELALTACDNWPAKASCGSIFIKEEKQNLKPECAVISENRGSVNANFSDCKYTDLMNCELLSRSPLDDPKIDVLNESTVLKPRKNGKDLSLPLQNNGDSEPWMTDRNAKASHSVQQILEMIDLPRKYCRYYFMSLRGCERAKCWFRHVPEQRHEKICIAILKTYISINESGLLKRAVQIFVRYYREVTPGEDFAFQVLNDLLICLLKNCLLQEVFQILRVAVQINTLPAVDVLLKVFEHVASLNIRNAVPTLISTFRKLIDAGMFLEFEHFNYITKLLQQLQVSSQEINVVLNIKSRYQERHFKSSWLFDFNLIMAEIQHCKEKNDWSKMGTLYVNARTGCEHFDDLQKLSLCITEILTRDSEKDRPGVPFCDFADAVITNPTCNEADRVFIGRTGISMMNSYRKVLQWRKGRKVLDKLHELQINFTVLKGLMGAENLASRCQIVNNAAEIFLKTGSLDGVTWVLRESEWTTNTPQWPCDEEDILNRHNLLYSLVHNYMRQSLYRQALEVLQNLPGFQNSTDTVDVSQYGCIFNLLIKACFESKNLGVSSSAVDFMLSKNIAVDFFLLRGLITGLGRSCLWSKARTYYKTALSLGCYPPLEGNLHHKILPIPFYVSEIEMLLAIELFLVSNASDIQSPGATTQSLQIILKRCEDQTVQNNSDYQAGMERLSLAAHVSDPKLFLKRTTVNVNMEEVYSLEHTSALKWLQENMKWAGKVWLFQ"

     misc_feature    3385..3906
                     /gene="TOPAZ1"
                     /note="Putative aspartate racemase; Region:
                     Asp_Glu_race_2; pfam14669"
                     /db_xref="CDD:434113"
     misc_feature    3910..3984
                     /gene="TOPAZ1"
                     /note="PPR repeat [structural motif]; Region: PPR repeat"
                     /db_xref="CDD:276811"
     misc_feature    4000..4110
                     /gene="TOPAZ1"
                     /note="PPR repeat [structural motif]; Region: PPR repeat"
                     /db_xref="CDD:276811"
     misc_feature    4126..4200
                     /gene="TOPAZ1"
                     /note="PPR repeat [structural motif]; Region: PPR repeat"
                     /db_xref="CDD:276811"
ORIGIN      

atggaactgaaattgcagatcccaacctcggaggaggagcttgacagcacagagagtattatcccctgtttgccagaagcagaggtgctgcagcctaggaacagcgcatgtagtactggaattaaaggcattggctccttaatgatactgaaactgcaaatcccagatcttaaaaagagtttggggaacgaggaatcgtccttgtctgaaccacaaccttgggaagtggtagataacccagggaagatgaatcggtgttctttaaaaggttcagaaaagcccaaggaacaaggaaataaatgcttgagaaagaaaagcagtacatctttggggaaatcaaaactacaagaaccaagaaagagaggtggatctgccttggtagaactccatacaaagtgtctggagtccaagaagagggctgtgagtctgaagaagagggactcgctgcatgtacagggtgtaagtggtcaagaacagccaacagccagaggaaagctgcacaagcgttgcatgatagagcagcagcagagctcagacgctcagaaaggagcagatagcctgggggaaagtgcccagcgtaagagaaaagctgcttgtcgtgacagtacagtagaacagagtgaagtgaatcgcagcactaacacaatgcaaaaagaaagctcacccataaaaagtagttcgttgttgaatgaagaagtaaaacctcaacataaagaagggcatcttccatgccgtcagagccgaggcagtaagtttttgagtgaaaaaaaaatgaatgttggtagaaagcgtgcaaaaaagatgaaaatcagtgagatgtcagccgtgcagaatgttttcacaaatatgcctgatgaatgcaccaagtgtgaattaaaggcagacgttgccacgtcaggctcctctgctgtcttaggacaaaaccataaagaaatgactctgtcagattcgtgggattgtacagcagatcttcatacaggaaacaatactcgtgaagcacaagaggcgtcagtacagagcaagaactgtaccaaatcacttgcatttgaaggtggcttgaagaagacatccaggctctctgtagtagcaaaaggagaagcttcaagctgtgaggcagcacagcagcactctgctacttcaggtagtctgagggcactaactcaagcccctggtgtttctaattgtctcaaaagcatgacagatggaaaagtgaataaagctaataagaaactgcgtcagtttacctgtcaaagaacactgcctatgactggtaaaaatgtttggcctcgtgaatcttgcgcaaggacttctgaatgggttcccaaaaatcactggtccatctcagaaggaaacagacttctaagtccagtctttgagggatcctctgatccaagcagcgtcaaagctgtaggaaacagtgccgtgacagaaaattcgaggcagttggatttgtgtacatcactggcagaagttaaggaatgtgcagatgaagcagtagacctaaatgccaaatgcccgacttcggttgaaaccccagaatcctcttctatggatatcgatgagagttgtggaatgagcaatgaaaatgtggaatcaccagttgatacggttagaagtgctctggcttttaaccctgatgatatgcaagaagttaaagcgaccttaaattttccagcaaaaccaaaaaataaaaacaaaggagctgtaacaaagagaagcccgtgtgtgacagtccagaataatccatctagaagtaacaaaagcagaataaacttcagccctaaggcaccggttgtgaaccaggcgcttcctgacgtaaaactagtgaaagcattgaacaccagaaacctgacaaatttcaaaattcccttacgcagaaacaaacctgaatccaggaaatgggaatgtgtcagttcatcaggaagaaaagcctgtagcccactagagctccttgacagcgctagtggttcacaaaggcagaaaacagatgaggagacttcggtaaatcctgagcagcagtcccttcctgtggttagtgatgctacatctacagcttccatgaagaaaaatgctggtaaggtcaacaggaaggacttgcatcacgatggctctgaaaccctttcaaaggagatgcccccgctccctgaacacgcctcctcatacccgtgtcctgctcctgagaggcagcaggagtcatctccatgtggcttcagtgctactgactgtgggtggaagccgaattttccagagcattcagggaatgcagttgaccttcctgctgccttagaaatacgtgatggtgacaaatcaggagtgaatcattcacagcccaaaagtgatttttttccagatgttctggaagcttacaaagaagatgttcttgtcattgatgtgattcaggacgaccctgatctttttggagccagtgaggaagaagagcttgcactcacagcctgtgacaattggcccgcgaaggcatcctgtggtagcatcttcattaaagaagagaagcagaatcttaagcctgagtgtgctgtgatttcagaaaatagaggttcagtaaatgctaattttagtgactgtaaatacacagaccttatgaactgtgagctgctctcaagatctccattggatgacccgaaaatagatgtcctcaatgaaagtacagtgctgaaacccaggaagaatggaaaagacctttcactgccattgcaaaacaatggagattctgagccatggatgacagacagaaatgcaaaagcttctcattcagtccagcagatcctggagatgattgatttgccccgtaaatattgcagatattatttcatgagtttgcgtggctgtgaaagggcaaaatgttggtttcggcacgttcctgaacaaagacatgaaaagatttgcattgcaatacttaagacatacattagtatcaacgaatcaggtcttctaaaacgtgcagtccaaatatttgtcaggtattacagagaagttactcctggtgaagattttgcttttcaagtgctgaacgatcttctcatttgtttgctcaagaactgtttgttgcaagaagtgtttcagatactgcgggtagctgtacagattaatacactgccggctgtggatgttctgctgaaagttttcgagcacgtggcttctttgaatataagaaatgctgtgcctacattaatcagtacctttcgtaagctcattgacgctggtatgtttcttgagtttgaacattttaattacattactaaactccttcaacaactgcaagtttccagccaggaaataaatgttgttttgaatataaaatccagatatcaggaaagacattttaaaagcagctggctctttgacttcaatttgataatggctgaaattcagcattgcaaggaaaaaaacgattggagtaagatgggaactttgtatgttaacgcaagaactggatgtgaacattttgatgatcttcagaaattgtctttatgtattactgaaatactaacaagagattctgagaaagacagaccaggagttcctttttgcgattttgctgatgcagtaataacaaacccgacatgtaatgaagcagacagggttttcattggaaggactgggattagcatgatgaattcttatcgcaaagtgctacagtggagaaagggaaggaaggttttggataaactgcatgagctacagataaattttacagtcttgaaaggacttatgggtgcagagaacttagcatcaagatgccaaattgttaataatgctgcagaaatttttcttaaaactggaagtttggatggagtgacatgggtattgagagagtcagaatggaccacaaatacaccacagtggccctgtgatgaagaggacatcctcaatcggcataacctgttatattcactagtgcacaactacatgaggcagagtttatacaggcaggcactggaagttctgcagaatttaccaggtttccaaaatagtactgatactgttgatgtttctcagtatggctgcatttttaacctgctgataaaagcctgttttgagagcaagaaccttggggtctcatcttctgcagtagacttcatgctttcaaaaaatatagctgttgatttttttttactgaggggattaatcacaggtttgggaagaagttgtttgtggagtaaagctagaacctactacaaaactgctttgtcactgggttgctacccaccactagagggaaatttacatcacaaaatattgccaattcctttttacgtgtctgagattgagatgctgttggccattgaattattcctcgtttcaaatgccagcgatattcaaagtccaggggctactactcagtctcttcaaataatactgaaaagatgtgaagaccagacagttcagaataacagtgactatcaagcaggaatggagagacttagcctggctgctcatgtgtctgatccaaagctttttcttaagcgtacgacagtgaatgttaatatggaagaagtttacagcttggagcatacatctgctctaaagtggcttcaggagaatatgaaatgggctggaaaggtctggctgtttcagtag

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