LOCUS       XM_032099688            6714 bp    mRNA    linear   VRT 23-JAN-2020
DEFINITION  PREDICTED: Corvus moneduloides ATPase copper transporting beta
            (ATP7B), transcript variant X2, mRNA.
ACCESSION   XM_032099688
VERSION     XM_032099688.1
DBLINK      BioProject: PRJNA599199
KEYWORDS    RefSeq.
SOURCE      Corvus moneduloides (New Caledonian crow)
  ORGANISM  Corvus moneduloides
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea;
            Corvidae; Corvus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045477.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Corvus moneduloides Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6714
                     /organism="Corvus moneduloides"
                     /mol_type="mRNA"
                     /isolate="bCorMon1"
                     /db_xref="taxon:1196302"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="blood"
                     /country="New Caledonia: near Bourail"
                     /lat_lon="21.599296 S 165.398128 E"
                     /collection_date="17-Oct-2018"
                     /collected_by="Matthew Steele"
     gene            1..6714
                     /gene="ATP7B"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 ESTs, 17 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 45 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116439737"
     CDS             271..4845
                     /gene="ATP7B"
                     /codon_start=1
                     /product="copper-transporting ATPase 2 isoform X2"
                     /protein_id="XP_031955579.1"
                     /db_xref="GeneID:116439737"
                     /translation="

MERKLDNKMKRELSYLATLNDRNISLVSIRKQQAARDVPELLIIGEKSKTASLVKTSSNLQKEEELPQSYSMGMTEVNTVERQALSNTDSPPDCELKPTMKHNFAFDNMGYEESSETMPSPPSQEHSVVVNIVGMTCQSCVQSIEGQISKVKGILRIKVSLEQNHAVIKYLQSEISPEQICQEILDMGFDANIAEDKLTTATVNLPSLKEAVVKLRVEGMTCQSCVTSIEGKIRKLHGVAKIKVSLDNQEAIVAYHPYIIQPDDLKRHISDLGYDCTIKSKSAPLKLGALDLQRLQNANPRETPASLKSDGLDPLVTEVGSTATVTLQIEGMHCKSCIRNIEGNISDLPGIKSIKVSLEHKCAVVQYTPDFITLSALQQAIESLPPGNFKVTLHNGSEAGKAASPSGAFTYDLIRQPPQGTTLTAVIKIDGMTCNSCVQSIEGAISQRQGVQHVAVSLAGSTGTIHYDPAVTSGEELRAAIEDMGFDASVLTDTATGEHRCQPDASKAAVKPGAPEPPHQGCASDALPDSPHLDGSNRLSGATEEKCVLQITGMTCASCVSTIERNLQKEDGIVSVLVALMAGKAEIKYKPELIQPLEIAQLIQNLGFEATVMEDNAETEGQVELLITGMTCASCVHNIESKLMRTNGIFSASVALATSKAHIQFDPEIIGPRDIIKVIKEIGFHASVAKRAPNAHNLDHKKEIQQWRKSFLYSLVFGIPVVVIMIYMQIPNGGDRGSKVLERNLIPGLSILNLLFFILCTFVQFLGGWYFYVQAYKSLRHKTTNMDVLIVLATTIAYLYSCVILIVAIIEKAEKSPVTFFDTPPMLFVFIALGRWLEHIAKGKTSEALAKLMSLQATEATVVTLGPDHSIVREEQVPVELVQRGDVIKVVPGGKFPVDGKVIEGSSMADESLITGEPMPVIKKPGSTVIAGSINAHGSLLVNATHVGSDTTLAQIVKLVEEAQMSKAPIQQLADKFSGYFVPFIIIISTVTLIAWTTIGFVNFDIIKKYFPNQSKNISKAEIILRFAFQTSITVLSIACPCSLGLATPTAVMVGTGVAAQNGILIKGGKPLEMAHQIKTVMFDKTGTITCGVPKVMRVLLMGDTAMLPLKKVLAVVGTAEASSEHPLGMAVTKYCKEELGTESLGYCTDFQAVPGCGISCKVGGVEAILGSELNVNISGDSSAPLGDNAVITLLESQGPSASQKYSVLIGNREWMRRNGLNIRNDVNDAMTNHEMKGQTAILVAIDGMLCGMIAIADTVKQEAALAVHTLQSMGIDVVLITGDNRKTAKAIATQVGIKKVFAEVLPSHKVAKVQELQNGKKKVAMVGDGVNDSPALARADVGIAIGTGTDVAIEAADVVLIRNDLLDVVASIHLSKRTVRRIRINLILALIYNMLGIPIAAGVFMPVGLVLQPWMGSAAMAASSVSVLLSSLQLKCYKKPDTERYEAQAQGRMKPLTPSQISVHIGMDDRRRDSSKASPWDQTSQVSLSSLASDRLPRGNGFIEEEGGKWSLLINGADEEQYI"

     misc_feature    655..843
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(673..681,688..690)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    910..1101
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(928..936,943..945)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1246..1422
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(1264..1272,1279..1281)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1546..1737
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(1564..1572,1579..1581)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1912..2103
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(1930..1938,1945..1947)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    2140..2331
                     /gene="ATP7B"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(2158..2166,2173..2175)
                     /gene="ATP7B"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    2395..4518
                     /gene="ATP7B"
                     /note="P-type heavy metal-transporting ATPase, similar to
                     human copper-transporting ATPases, ATP7A and ATP7B;
                     Region: P-type_ATPase_Cu-like; cd02094"
                     /db_xref="CDD:319783"
     misc_feature    order(3388..3390,3394..3396,4447..4449)
                     /gene="ATP7B"
                     /note="putative Cu binding site [ion binding]; other site"
                     /db_xref="CDD:319783"
     misc_feature    order(3520..3528,3730..3732,3898..3906,3994..3996,
                     4114..4122,4180..4182,4189..4191,4198..4200,4255..4257,
                     4264..4266)
                     /gene="ATP7B"
                     /note="putative ATP binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:319783"
     misc_feature    3520..3540
                     /gene="ATP7B"
                     /note="P-type ATPase signature motif; other site"
                     /db_xref="CDD:319783"
     misc_feature    3520..3522
                     /gene="ATP7B"
                     /note="phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:319783"
ORIGIN      

agtttggaaagcacgagggatgccaattggtgggaaacatttaaactggcagggagagcaggtagctgagtgcagcaagcagcctacataaggatcacaggttccatctgggattttgtgatgaatgcctaatgagcacatggattagacggacagaactcttcaagcttctgtaaatgtagctgaaagaagcgtggcttacaggacaccaaataactgttcctgtaaaacttttgtttggtgttgcagtatttaaagtccagaaaaataatggagagaaaactggacaataaaatgaaaagggaactgtcctacttagctactttaaacgacagaaacatatccctggtgtctattcgtaagcagcaggcagctcgtgatgtgcctgaactactgattattggtgaaaagtccaagacagcatcgctggtaaaaacaagcagtaacttgcagaaagaagaggaacttccgcagagttactccatgggaatgacagaagtcaatacagttgaaagacaggctttgtccaacactgattctcctcctgattgtgagctgaagcctacaatgaaacataattttgcttttgacaacatgggctatgaggagagctctgaaaccatgccctctccaccttcccaagagcatagtgtggtagtcaacattgtgggaatgacttgccaatcatgtgtgcagtcgatagaaggccaaatttccaaggtgaagggcattttgagaattaaagtctcccttgaacagaaccatgctgttatcaagtatctgcagtcggaaataagtcctgaacagatttgccaggaaattctggatatgggctttgatgccaacatagcagaagataagttgacaacagcgactgtaaatttgccaagcttgaaagaagcagtagttaagcttcgggtagaaggcatgacatgccagtcctgtgtcaccagcattgaaggaaagattaggaaactacacggtgtagcaaaaatcaaggtgtcacttgataaccaagaagcaattgttgcttaccatccttacatcattcagcctgatgacctcaagagacacatcagtgacctggggtatgactgcaccattaaaagcaaatcagcccctttgaagctgggtgcccttgatctccagcgcttgcagaatgcaaaccctagggagacacctgcaagtctcaagagtgatgggctggatccactggttaccgaggtgggtagcacagctacagtgactttacagatagaaggcatgcactgcaagtcctgtatcagaaacatcgaaggaaatatatcagatcttcctggcataaaaagtattaaagtgtctttggagcataaatgtgctgtggtacagtataccccagatttcatcaccctgtcagctttgcagcaagctattgaatcccttccacctggaaactttaaagtaaccctccataatggttcagaagcaggcaaagcagcatctccctcaggtgctttcacatacgatctcatcagacagccaccgcaaggcacgacacttacggctgttattaagattgatggcatgacctgcaattcttgtgtacagtccatagaaggggccatatcacagagacaaggagtgcagcatgtagcagtttctctagctggcagtactgggaccatacactatgatccagctgtcacgagtggagaagagttaagagctgccatagaagacatgggatttgatgcctctgtactgacagatactgctactggagaacacaggtgccagcctgatgccagcaaagctgccgtgaaacctggagctccagagcctcctcaccaaggctgtgcctcagatgctcttccagacagtcctcaccttgatgggtcaaacaggctcagtggagccacagaagaaaagtgtgttttacaaatcacaggcatgacctgtgcatcgtgtgtgtctaccattgaaagaaatttgcagaaagaagatggaattgtttcagtgttggtagcactgatggcaggtaaagcagagataaaatacaagccagaactcatacagcctcttgaaatagcacagctgatccagaatctgggttttgaagctactgtcatggaagataatgcagaaacagaagggcaggtggagcttcttattacagggatgacttgtgcttcttgtgttcacaatattgaatccaaactcatgagaacaaatggcatattctctgcctcagttgcacttgcgactagcaaagctcacatccagtttgatcctgaaattattggccctcgagatattataaaagtaatcaaggaaattggctttcatgcttctgtggctaaaagagctccaaatgcacataacctggatcacaaaaaggaaatacagcagtggaggaaatctttcttgtacagcctagtgtttggtattcctgttgtagtcataatgatttatatgcaaatacccaatggtggggaccgtgggtctaaggtgctggaacggaatctcattcctggattatctattttgaatcttctcttctttatcctctgcacttttgttcagttccttggtggatggtatttttacgtacaagcttacaagtcactgaggcacaagacgaccaatatggatgtgctcattgtactggccacgacgattgcttatctgtattcctgtgtgatcctgatagtagcaatcattgaaaaggcagagaaaagcccagtcactttcttcgacactcctccgatgttgtttgtgttcattgcacttggcagatggctggaacacatagccaagggtaagacctcagaagctcttgctaaacttatgtctcttcaagccacagaagccactgtggtgactcttggacctgaccactccattgtcagggaggagcaagtacctgttgaacttgttcaaaggggtgatgttataaaagttgttcctggtggaaagttcccagtggatggaaaggtcattgaaggcagttctatggcagatgagtctctcattactggggaacctatgccagtcattaaaaagcctgggagcacagtgattgctggttctataaatgcacatggctcacttcttgttaatgcaactcatgttggtagtgataccactctggcacagattgtgaaattggtggaagaagctcaaatgtcaaaggcacccatccagcaactggcagataaatttagtggatactttgttccatttatcatcatcatctcaactgtgacattgatagcatggaccacaattggttttgtaaattttgatattattaaaaaatattttcctaatcagagcaaaaacatttcaaaagctgaaataatactgaggtttgcatttcaaacctcgatcactgtgctgagcattgcatgcccttgctctttaggcctggctacccccacagctgtaatggtgggcacaggagtggctgcacagaatggtattctcatcaagggtggaaaacccctggaaatggcacatcagatcaagactgtgatgtttgataaaactgggaccatcacctgtggagttcctaaagtcatgagggtgcttttgatgggagacacagccatgctccccctgaagaaggtactggcagttgttggtacagcagaagccagcagcgagcatcctttaggaatggctgtcactaaatactgcaaagaggagcttggcactgagagcctgggatactgcactgacttccaggcagtcccaggctgtggtatcagctgcaaggtcggaggagttgaggccattcttggcagtgagctgaatgttaacatcagtggggatagcagtgctcctctgggagataacgcagtgatcacgctcttggaatcacaaggtccatcagcttctcagaaatactcggtgttgattggaaatcgtgagtggatgcgacgcaatggcttgaatattagaaatgatgtaaatgatgcaatgacaaaccatgaaatgaaaggacagactgccatactagtggctatagatggtatgttgtgtggaatgatcgcaatagcagacactgtcaagcaggaggcggcccttgctgtgcacacactgcaaagcatgggaatagacgtggtgctgataacaggagacaacaggaaaactgcaaaagccattgctactcaggttgggatcaaaaaagtctttgcagaggtgcttccttctcacaaggttgcaaaggtccaggaactccaaaatggaaagaagaaggttgcgatggttggtgatggagtcaacgattcccctgcactagccagggctgatgttggaattgcaattggaaccggcaccgatgttgccattgaagctgcagatgttgttcttatccgaaatgatttactggatgtagttgccagcattcacttatcgaagagaacagttcgaaggatacggataaatctgattcttgccttaatttataatatgcttggaatacccatagcagcaggtgtgttcatgcctgttggcctcgtgcttcagccttggatgggatcagctgcaatggcagcttcttctgtgtctgtcctgctgtcttccctgcagctgaaatgttacaagaagccagacacagaaaggtatgaagcacaagctcaaggccgcatgaagccactcactccttctcaaatcagtgttcacattggaatggacgataggaggagggattcttccaaagcatctccctgggatcagactagccaagtgtccctctcttccttggcttcagacaggctgccaagaggcaatggttttattgaggaggaagggggcaagtggtcattgctcataaatggagcagatgaagaacagtacatctgaagcactggactcttggtacagagggagatgttcctccccaccactgaggggaaggactgatacttcatcaacagcttcagtgttgtaagtgaagtatttcttcagctcataagacatttgcaactcagctcagagttgggttgtatggattgtggatttttttcaggtcaccagttatttctagttacggaaataatctgtggcactataatgaactggcttgtttgcacacagcattttgtgaaataatgtaaaattgtaattttcggagtttctgaaaaagaatttctttctctgtgactctttgctaggaaccaaatgtcatacttttcactcttttaaactttattacttcaagactgcatgaagcaaaagtattttcagagctgccaaatataaatttctgtctaaatgaaattagcaatggcataaggaactctgtagtcggaagttgaatttttacacagaattgtaactagacatgtcactgtgagaacacttcgtgtttaggattcatggcatctcctgagacgaaaagtgctttgttgtttcacctactataactctctgaaaggtctttttcaaagattttcacttgctttgaggtattgcatccttttgatgcacatttctattgctctcctagattttctcttttgctccttatgaggccttttcccctttttcttgcacaagaggtcttctatgagttatcattatgcttacagatattcctgtctgggacaaactccttgaagttaccaggaatctttacattcctattgaagtccataaaggcagaacaattcctggtcccagttatccaagataccttgcaggacccagggaagctcctaagagttgggcagttgtctgtctctttcctttgacagagtgaagaatttatgccagtgtgagcaaaggtggtatttaccttggtatgactgagcagaactagcactggtgtgactccagcatagctgcacagagtgagtttattgcatagcttaactccaacttgctggttgcttaaaatggagctaaaagtttaaattataaaatggccttaaagggggcttctatttgctatcatataaataaatgccaggacttgaactaagaaaatttgtaatttaaatttgtatttatgttttgcattggttttagttcccctctttacttcggtgagaaatcaaagtgctggacgacccttttttgctttaacatctttaccaaagcttgtagtaatttcatccctgtggatgtcagcttcaccccttaatactttttacagtcaggacagtaggaatcaacagctttggtgcactggatccaggcccagagtgctgtgttgtccaggtgtgggactctgatgtaagcaaagttttatagtctaatttagaaagaagaggaaatactgtgctaaacaaaattcaataactacttcttttcattgactgaaatatagagctgtttccaacacaggttcaaatcctgcttctcctaatgtaaaaatgaaaaacaagtcagagaggaaaagaattgtgcttaaagcattggacaggtcttcctattttctcagcagtgtcttaaattacaaaccagttttaaaactctatgcaggtagagattgctttcacagcgcacacacacttttcaaacatgccatagatgcatgtccctatgagaaagaaggtctgacatttcactattctgtgttttcttaccagttcttacagtaaaaatatgttgggggtttttttgtttgtttttttctttttcaaatcaaacaaataactgtgtgtctttgtttttcttttttcttgaagggttcagaataaaaagagcataaacagaggttgttggatt

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