2024-03-29 21:10:19, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_032085862 3474 bp mRNA linear PLN 08-MAR-2021 DEFINITION Aspergillus pseudonomiae NRDE-2, necessary for RNA interference-domain-containing protein (BDV37DRAFT_277778), partial mRNA. ACCESSION XM_032085862 VERSION XM_032085862.1 DBLINK BioProject: PRJNA602443 BioSample: SAMN05446751 KEYWORDS RefSeq. SOURCE Aspergillus pseudonomiae ORGANISM Aspergillus pseudonomiae Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus. REFERENCE 1 (bases 1 to 3474) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (05-MAR-2021) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 2 (bases 1 to 3474) AUTHORS Mondo,S., Kjaerbolling,I., Vesth,T., Frisvad,J.C., Nybo,J.L., Theobald,S., Kildgaard,S., Isbrandt,T., Kuo,A., Sato,A., Lyhne,E.K., Kogle,M.E., Wiebenga,A., Kun,R.S., Lubbers,R.J., Makela,M.R., Barry,K., Chovatia,M., Clum,A., Daum,C., Haridas,S., He,G., LaButti,K., Lipzen,A., Riley,R., Salamov,A., Simmons,B.A., Magnuson,J.K., Henrissat,B., Mortensen,U.H., Larsen,T.O., Devries,R.P., Grigoriev,I.V., Machida,M., Baker,S.E., Andersen,M.R., Cantor,M.N. and Hua,S.X. CONSRTM DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (16-APR-2019) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_022475994). ##Metadata-START## Organism Display Name :: Aspergillus pseudonomius CBS 119388 GOLD Stamp ID :: Gp0108191 ##Metadata-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..3474 /organism="Aspergillus pseudonomiae" /mol_type="mRNA" /strain="CBS 119388" /culture_collection="CBS:119388" /type_material="culture from type material of Aspergillus pseudonomiae" /db_xref="taxon:1506151" /chromosome="Unknown" gene <1..>3474 /locus_tag="BDV37DRAFT_277778" /db_xref="GeneID:43670553" CDS 1..3474 /locus_tag="BDV37DRAFT_277778" /codon_start=1 /product="NRDE-2, necessary for RNA interference-domain-containing protein" /protein_id="XP_031946745.1" /db_xref="GeneID:43670553" /db_xref="InterPro:IPR013633" /db_xref="JGIDB:Asppsen1_277778" /translation="
MDSSSSQPEKKSIPRFASFKPRPAPPPEADRPPERRSRDSSDKEDRHRHHSKRHRSRHRHHRDRSRSRDRRRERKNIRHDHKEASHSERELIPEHRLVLQDTVKLEAEASDLYVVDRKGDRYNIIYGTIHRYNVPLYYRIGRGSVLGLPPTNKIDRDTAEGDALIIKADAWRSDSSRTRSKSIISGGNTQRTKLLRIRPAPTLDAAADASKDYLPLTASVHHKRSDVSGHEGSDDERYGYRSIHGKAKQEDNLPSDMEEVSDTDLSGDETARVDPDKEVKQRNVELSRNVERNPTDVRAWIDLVEHQESLLKGSEGETKTLTYAEKKSLADIKISLYEKALKKVGGHASRDLLLLGLLEEGAKLWDTKKLSARWQAVLKSNPHFISLWVKYLDFRQTEFLEFTYERCYATFIDCMRLNRSASDNPEKAHVQVYLFLRLTLFIREAGFTEHAVGLWQAILELTFFQSGTTDSVTAREEVLSAFMDFWDSEVVRIGEVGAKGWQSGLNTLLEPRSFTSQNRVNSKSVFASWMSCERERINNARLPARSLDEENDDPYRVVLSADLLEVLSLVWGLASTDVLVDSFLYFCHLPPIAFSSNSKTTNHWMGDSFLRNEFMSSSDSTLDRWVPKYDTDTRNTASAPGYFQNFVHSFDTLFADHEAWFSSIGPWATSVLNSRSDVDPGWVSKVLRSLVELMPQNDHLAAYAIAVEFAGDRSKAAKYAKSLLKKRPSSLWLYNVYALIERRSGNLEAANRVWETTLSMSQNSKTFTEEEKVDAVFLWHTCIWEMLEAGSLDYVSYLFSSMPQSSPSLKAPVDPKQYIFNPTSLLKTQSLLSDNQEASLAAGKANTFVACTDCLAILTYLSNSRDLNKALQPYSNGFNRLATLPAKFESFRSISIELLHQARARLLYYHARTSSIYKPSQIRALLADSISLFPHNTIFLSLFAWNESRFRIEERVRDTIMDITTKAHNRADQIFTTQVPITSHLFSIFTELNRPVYAGSTPHSVRAAFEKAIGDKDPMTSTHHNTLSTARSNLTLWKLYILFEISQHDINRAKDVFYRGMRACPWSKELIMLAFSHLRADIVRELHPSASRKGDGMNFFELRSVYNVLIEKELRVHVDIEDELDELLAEMQQKTAALGLPIAMPEDADSEDEQMQL"
misc_feature 343..651 /locus_tag="BDV37DRAFT_277778" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(343..360,367..372,382..387,391..393,397..426, 430..444,451..456,499..501,505..513,532..540,565..570, 574..588,625..651) /locus_tag="BDV37DRAFT_277778" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 853..1764 /locus_tag="BDV37DRAFT_277778" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
atggattcctctagctctcagccggagaagaagtccatccctcggttcgccagcttcaagcctcgaccagcgcctccacccgaagctgatcggcctcccgagcgccgcagtcgcgacagctccgacaaagaagacaggcacagacaccactcaaaacgacaccgttcgagacacaggcatcaccgagaccgttcccgctctagagatcgtcgaagagagcgtaaaaacatccgtcatgaccataaggaggcgtctcattccgaacgggagcttattcctgagcaccgattggtgctgcaagacaccgtgaagttagaggcggaggcgtcagatctatatgttgtggatcgtaaaggtgatagatacaatatcatatacggtactattcatcgttacaatgttccgctctactaccggataggtcgaggtagcgtgctaggtcttcctccaaccaataagatcgatcgcgataccgccgaaggagacgcgttgatcatcaaggcagacgcctggcgctccgatagctcaaggacaaggtcgaagagtataatatctggggggaacacacagagaacgaaactacttcggatacgaccagcacctacgttagatgcagctgcagacgcctcgaaagattatcttccacttacggcctccgtgcatcacaaacgcagcgatgtctcaggacatgagggttcggacgacgagagatatggctatcgttcaattcatggaaaggcgaagcaagaggataaccttcccagtgacatggaagaagtatcagacaccgatttgagtggtgacgagacggcgcgagtcgaccctgataaagaagttaaacagcgcaatgtcgagctgtccaggaatgttgagcgcaatcccaccgatgtgcgtgcatggattgaccttgtcgagcatcaggaatctcttctgaaaggctccgaaggagaaacgaaaaccctcacgtatgctgaaaagaagagcttggccgatatcaagatatccctctatgagaaagccttgaagaaggttggaggacatgcttctcgtgatcttcttctcctcggtcttctagaagaaggcgccaaactttgggacacgaaaaagctttcagcacggtggcaggctgtactgaaatcaaatcctcatttcattagcctctgggtcaaatatcttgatttccgacagactgaatttcttgaatttacttacgaacgatgctatgctacgttcattgactgtatgagattgaacagatctgcatccgacaacccggagaaagcccatgttcaagtctacctcttccttcgcttgacgcttttcattcgggaagctggattcaccgaacatgcagtaggtctatggcaagcaattctagagctgacgttctttcaatcggggacaacggattctgtcacagctcgagaagaggtgctgtcggcgttcatggatttctgggattctgaagttgtgcgtattggtgaagttggtgcaaagggctggcagagcggccttaatactcttttggagcccagatccttcacatcacaaaatcgagtgaactcgaagtctgtattcgcgtcttggatgtcatgcgaacgggaacgaattaacaacgctcgccttccagctcgcagcttagatgaagagaacgatgatccctatcgtgtagttctctcggccgatctgctggaggtcctatcgcttgtatggggcttagcatcaacagacgtgctggttgacagctttctatatttctgtcatcttcctcctattgcattctccagcaactcgaagacaaccaatcactggatgggtgacagcttcttgcgaaatgaattcatgagcagctctgattccacgcttgatcgctgggttcctaaatacgacaccgatactagaaataccgcttcggcgccgggctacttccagaactttgttcattcattcgatactcttttcgcggaccacgaagcatggttctcctccattggtccttgggctacaagcgtactgaactctcggtccgatgtcgaccccggttgggtttccaaggtattgagatctttggtagagctgatgccacaaaatgaccatttggctgcgtatgcgattgcggtggagtttgcaggtgaccgcagcaaggcagcaaagtatgcaaaatccttactcaaaaagcggccgtccagcctgtggctctacaatgtgtatgctcttattgaacgtcggtcaggcaacctggaggccgccaaccgtgtgtgggagaccactctatctatgagccaaaacagtaagacgtttactgaggaggaaaaggtcgatgctgttttcctttggcatacttgtatatgggagatgctggaggctggcagcttagattatgtatcttatctcttcagttctatgcctcagagcagtcctagcctgaaggctccggtggatcctaaacaatacatattcaacccaacaagcctgctgaagactcagagtttactatcagataaccaagaggcctcgcttgcagccggaaaagccaacacttttgtggcctgcacggactgtctagcaatactaacctacctttctaactctcgggatctaaataaagcccttcagccatacagcaatggcttcaacagacttgcaacattgccagcaaagttcgaatcgttcagatccatttctattgaactcctgcaccaagcgcgtgcaagactgctctactatcacgcccgcacaagcagcatatacaagccctcccagattcgtgctctgctggcagatagcatatccttattcccccataacacgatatttctgtccctctttgcttggaatgaatctcggttccgtatcgaagagcgcgtcagggataccatcatggacataacgacgaaagcccacaaccgtgccgaccaaatcttcacaacccaagtaccaatcacatcccacttattctccatcttcaccgaactaaatcgtcctgtgtatgccggttctaccccacactctgtccgtgcggctttcgaaaaggctattggcgacaaagacccgatgacctcaacccaccataacacactttccaccgcccgctccaacctcacactctggaaactctacattctcttcgagatatctcagcacgacatcaatcgtgccaaagatgtcttctaccgtggcatgcgcgcctgtccatggtccaaagagctcatcatgcttgccttcagccatctcagggcagatatcgtccgggagctgcatccaagcgcatcacggaagggcgatggcatgaacttctttgagctacgaagtgtgtataatgtcctgatagagaaggaattgcgggttcatgtcgatatcgaagatgagttggacgagctgttggcggagatgcagcagaagacagctgcgctggggctaccaattgccatgccggaagatgccgatagcgaggatgagcagatgcaactatga
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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